Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001737

Physical Location & Seq

Genomic Coordinates Forward (+)

11457972 .. 11458770

Gene Structure 799 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g18020.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCCATGGAGATGGTGCCGACCTGCTTGATGTTGTTTACCCTAGTTGTTGTCCTAAGTATAAACTTTGTTCCCTCGGTGTATGGAGCGCCACCCCTCTCGGAGGCGAAAGCCTTGCTTGCATTCAAGAACAGATTAACAGATCCGCAGAAAGTGCTCCAGAGCTGGGATGCCACCCTTATCACACCTTGCACTTGGTTACATGTGAGGTGCAACCAAGACAATAAGGTTACTGCAGTCGATCTAGTTGGTTCGAACCTCTCTGGAAATTTAGTACCTGAACTCGGACTGCTTCCAGCTCTGCAATATCTGAGATTGGGTAGAAACAATATCGCAGGAACCATTCCAGCTGAGCTTGGTAACCTGAAGAGTCTCGGGGTACTCGACTTGAGTAACAACAAATTAACTGGGAAAGTCCCCTCCCAAATTGCAAGCATCCCACGCCTTCGATTGGCAGACATTTCCAACAACAATAATCTGTGTTGGAACTTTTGGCCCACACCAGTGTTTAAAGGTAGTTACGGTTTATGCCAGAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8

Protein Analysis

181

Amino Acids

19.66

Weight (kDa)

9.22

Isoelectric Point (pI)

32.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	34 - 72	2e-11	Leucine rich repeat N-terminal domain
LRR_14	PF23598	87 - 150	2.6e-07	Leucine-rich repeat region
LRR_8	PF13855	99 - 158	9.1e-08	Leucine rich repeat
LRR_4	PF12799	99 - 136	6.9e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43740 AT3G43740 AT5G21090
fragaria_vesca	FvH4_3g14800 FvH4_3g14810 FvH4_3g14820 FvH4_3g17980 FvH4_3g18020 FvH4_3g18100 FvH4_3g27550
malus_domestica	MD11G1182200.v1.1
prunus_persica	Prupe.6G154900_v2.0.a1
pyrus_communis	pycom11g15710
rosa_chinensis	RchiOBHm_Chr4g0425121 RchiOBHm_Chr5g0024351 RchiOBHm_Chr5g0030061 RchiOBHm_Chr5g0049921
rosa_laevigata	RLG00000001776 RLG00000007397 RLG00000007401 RLG00000032794 RLG00000033241 RLG00000034665
rosa_multiflora	Rmu_co8267339.1_g000001 Rmu_co8518351.1_g000002 Rmu_sc0000333.1_g000069 Rmu_sc0003368.1_g000001 Rmu_ssc0000420.1_g000033
rosa_roxburghii	Rroxscaffold_1G00031390 Rroxscaffold_1G00054880 Rroxscaffold_1G00055800 Rroxscaffold_5G00367190
rosa_rugosa	Rorug04G0201800 Rorug05G0254200
rosa_samantha	Rh3CG306200 Rh4BG264000 Rh4CG275100 Rh4DG260100 Rh5AG174000 Rh5AG328600 Rh5BG170800 Rh5BG208600 Rh5DG213000 Rh7DG379000
rosa_wichuraiana	Rw4G022350 Rw5G015690 Rw5G019100 Rw5G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	32
AccB1I	GGYRCC	1 cut(s)	16
AciI	CCGC	1 cut(s)	146
AclWI	GGATC	1 cut(s)	137
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	268
AcuI	CTGAAG	1 cut(s)	386
AfaI	GTAC	2 cut(s)	276, 381
AfiI	CCNNNNNNNGG	4 cut(s)	103, 166, 284, 451
AflIII	ACRYGT	1 cut(s)	202
AgsI	TTSAA	1 cut(s)	127
AleI	CACNNNNGTG	1 cut(s)	503
AluBI	AGCT	4 cut(s)	165, 299, 350, 355
AluI	AGCT	4 cut(s)	165, 299, 350, 355
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	1 cut(s)	377
AlwI	GGATC	1 cut(s)	137
Ama87I	CYCGRG	1 cut(s)	374
AoxI	GGCC	2 cut(s)	3, 494
ApoI	RAATTY	1 cut(s)	268
AspLEI	GCGC	1 cut(s)	91
AspS9I	GGNCC	1 cut(s)	495
AsuII	TTCGAA	1 cut(s)	254
AvaI	CYCGRG	1 cut(s)	374
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	16
Bbv12I	GWGCWC	1 cut(s)	159
BccI	CCATC	1 cut(s)	7
BcgI	CGANNNNNNTGC	2 cut(s)	97, 131
BcoDI	GTCTC	1 cut(s)	377
BfaI	CTAG	2 cut(s)	44, 245
BfmI	CTRYAG	1 cut(s)	234
BfoI	RGCGCY	1 cut(s)	92
BfuAI	ACCTGC	1 cut(s)	32
BlpI	GCTNAGC	1 cut(s)	351
BmeT110I	CYCGRG	1 cut(s)	374
BmgT120I	GGNCC	1 cut(s)	495
BmiI	GGNNCC	2 cut(s)	18, 340
BmrI	ACTGGG	1 cut(s)	417
BmsI	GCATC	2 cut(s)	160, 444
BmuI	ACTGGG	1 cut(s)	417
BpmI	CTGGAG	1 cut(s)	143
Bpu1102I	GCTNAGC	1 cut(s)	351
Bpu14I	TTCGAA	1 cut(s)	254
BpuEI	CTTGAG	1 cut(s)	409
BsaJI	CCNNGG	2 cut(s)	6, 75
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 166, 284, 451
Bse1I	ACTGG	2 cut(s)	412, 503
BseDI	CCNNGG	2 cut(s)	6, 75
BseGI	GGATG	2 cut(s)	175, 435
BseLI	CCNNNNNNNGG	4 cut(s)	103, 166, 284, 451
BseMII	CTCAG	2 cut(s)	302, 342
BseNI	ACTGG	2 cut(s)	412, 503
BseYI	CCCAGC	1 cut(s)	165
BshFI	GGCC	2 cut(s)	5, 496
BshNI	GGYRCC	1 cut(s)	16
BsiHKAI	GWGCWC	1 cut(s)	159
BsiHKCI	CYCGRG	1 cut(s)	374
BslFI	GGGAC	1 cut(s)	401
BslI	CCNNNNNNNGG	4 cut(s)	103, 166, 284, 451
BsmAI	GTCTC	1 cut(s)	377
BsmFI	GGGAC	1 cut(s)	401
BsmI	GAATGC	1 cut(s)	122
BsnI	GGCC	2 cut(s)	5, 496
BsoBI	CYCGRG	1 cut(s)	374
Bsp119I	TTCGAA	1 cut(s)	254
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	2 cut(s)	142, 241
Bsp1720I	GCTNAGC	1 cut(s)	351
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	1 cut(s)	146
BspANI	GGCC	2 cut(s)	5, 496
BspCNI	CTCAG	2 cut(s)	303, 343
BspLI	GGNNCC	2 cut(s)	18, 340
BspMAI	CTGCAG	1 cut(s)	238
BspMI	ACCTGC	1 cut(s)	32
BspPI	GGATC	1 cut(s)	137
BspT104I	TTCGAA	1 cut(s)	254
BspT107I	GGYRCC	1 cut(s)	16
BsrI	ACTGG	2 cut(s)	412, 503
BssECI	CCNNGG	2 cut(s)	6, 75
BssMI	GATC	2 cut(s)	142, 241
BssT1I	CCWWGG	1 cut(s)	6
Bst4CI	ACNGT	1 cut(s)	524
Bst6I	CTCTTC	1 cut(s)	362
BstAPI	GCANNNNNTGC	1 cut(s)	154
BstBI	TTCGAA	1 cut(s)	254
BstC8I	GCNNGC	2 cut(s)	120, 433
BstDEI	CTNAG	3 cut(s)	56, 311, 351
BstDSI	CCRYGG	1 cut(s)	6
BstEII	GGTNACC	1 cut(s)	359
BstENI	CCTNNNNNAGG	1 cut(s)	101
BstF5I	GGATG	2 cut(s)	175, 435
BstH2I	RGCGCY	1 cut(s)	92
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	2 cut(s)	145, 244
BstMAI	GTCTC	1 cut(s)	377
BstMBI	GATC	2 cut(s)	142, 241
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 154, 441
BstNSI	RCATGY	1 cut(s)	206
BstPI	GGTNACC	1 cut(s)	359
BstSFI	CTRYAG	1 cut(s)	234
BstX2I	RGATCY	1 cut(s)	142
BstXI	CCANNNNNNTGG	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	142
BsuRI	GGCC	2 cut(s)	5, 496
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	2 cut(s)	175, 435
BtsIMutI	CAGTG	1 cut(s)	510
BveI	ACCTGC	1 cut(s)	32
Cac8I	GCNNGC	2 cut(s)	120, 433
CfoI	GCGC	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	495
Csp6I	GTAC	2 cut(s)	275, 380
CviAII	CATG	2 cut(s)	7, 203
CviJI	RGCY	7 cut(s)	5, 113, 165, 299, 350, 355, 496
CviKI_1	RGCY	7 cut(s)	5, 113, 165, 299, 350, 355, 496
CviQI	GTAC	2 cut(s)	275, 380
DdeI	CTNAG	3 cut(s)	56, 311, 351
DpnI	GATC	2 cut(s)	144, 243
DpnII	GATC	2 cut(s)	142, 241
DraI	TTTAAA	1 cut(s)	511
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	362
EarI	CTCTTC	1 cut(s)	362
Eco130I	CCWWGG	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	386
Eco88I	CYCGRG	1 cut(s)	374
Eco91I	GGTNACC	1 cut(s)	359
EcoNI	CCTNNNNNAGG	1 cut(s)	101
EcoO65I	GGTNACC	1 cut(s)	359
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	2 cut(s)	10, 206
FaiI	YATR	5 cut(s)	8, 62, 84, 204, 529
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	2 cut(s)	6, 202
FokI	GGATG	2 cut(s)	182, 422
FspBI	CTAG	2 cut(s)	44, 245
GlaI	GCGC	1 cut(s)	90
GsaI	CCCAGC	1 cut(s)	169
GsuI	CTGGAG	1 cut(s)	143
HaeII	RGCGCY	1 cut(s)	92
HaeIII	GGCC	2 cut(s)	5, 496
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	2 cut(s)	10, 206
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HinfI	GANTC	1 cut(s)	370
Hpy166II	GTNNAC	1 cut(s)	39
Hpy188I	TCNGA	3 cut(s)	103, 287, 312
Hpy188III	TCNNGA	3 cut(s)	127, 160, 264
Hpy8I	GTNNAC	1 cut(s)	39
HpyAV	CCTTC	1 cut(s)	455
HpyCH4III	ACNGT	1 cut(s)	524
HpyCH4V	TGCA	6 cut(s)	122, 192, 213, 236, 304, 431
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 154, 441
HpyF3I	CTNAG	3 cut(s)	56, 311, 351
Hsp92II	CATG	2 cut(s)	10, 206
HspAI	GCGC	1 cut(s)	89
Kzo9I	GATC	2 cut(s)	142, 241
LmnI	GCTCC	2 cut(s)	86, 162
LweI	GCATC	2 cut(s)	160, 444
MaeI	CTAG	2 cut(s)	44, 245
MaeIII	GTNAC	5 cut(s)	198, 229, 359, 392, 518
MalI	GATC	2 cut(s)	144, 243
MboI	GATC	2 cut(s)	142, 241
MboII	GAAGA	1 cut(s)	379
MflI	RGATCY	1 cut(s)	142
MhlI	GDGCHC	1 cut(s)	159
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	268, 401, 426
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	379
MmeI	TCCRAC	2 cut(s)	464, 489
MnlI	CCTC	6 cut(s)	85, 97, 107, 201, 269, 430
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	137, 404, 510
MslI	CAYNNNNRTG	2 cut(s)	11, 503
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	350
Mva1269I	GAATGC	1 cut(s)	122
MwoI	GCNNNNNNNGC	3 cut(s)	119, 154, 441
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	2 cut(s)	142, 241
NlaIII	CATG	2 cut(s)	10, 206
NlaIV	GGNNCC	2 cut(s)	18, 340
NspI	RCATGY	1 cut(s)	206
NspV	TTCGAA	1 cut(s)	254
OliI	CACNNNNGTG	1 cut(s)	503
PciI	ACATGT	1 cut(s)	202
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PctI	GAATGC	1 cut(s)	122
PleI	GAGTC	1 cut(s)	378
PpsI	GAGTC	1 cut(s)	378
PscI	ACATGT	1 cut(s)	202
PspEI	GGTNACC	1 cut(s)	359
PspFI	CCCAGC	1 cut(s)	165
PspN4I	GGNNCC	2 cut(s)	18, 340
PspPI	GGNCC	1 cut(s)	495
PstI	CTGCAG	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	142
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	2 cut(s)	276, 381
RsaNI	GTAC	2 cut(s)	275, 380
RseI	CAYNNNNRTG	2 cut(s)	11, 503
SaqAI	TTAA	3 cut(s)	137, 404, 510
Sau3AI	GATC	2 cut(s)	142, 241
Sau96I	GGNCC	1 cut(s)	495
SchI	GAGTC	1 cut(s)	379
SduI	GDGCHC	1 cut(s)	159
SfaNI	GCATC	2 cut(s)	160, 444
SfcI	CTRYAG	1 cut(s)	234
SfuI	TTCGAA	1 cut(s)	254
SmiMI	CAYNNNNRTG	2 cut(s)	11, 503
SmlI	CTYRAG	1 cut(s)	388
SmoI	CTYRAG	1 cut(s)	388
Sse9I	AATT	3 cut(s)	268, 401, 426
SsiI	CCGC	1 cut(s)	146
SspMI	CTAG	2 cut(s)	44, 245
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	1 cut(s)	524
TaqI	TCGA	4 cut(s)	240, 254, 384, 448
TasI	AATT	3 cut(s)	268, 401, 426
Tru1I	TTAA	3 cut(s)	137, 404, 510
Tru9I	TTAA	3 cut(s)	137, 404, 510
TscAI	CASTG	1 cut(s)	510
TspRI	CASTG	1 cut(s)	510
XagI	CCTNNNNNAGG	1 cut(s)	101
XapI	RAATTY	1 cut(s)	268
XceI	RCATGY	1 cut(s)	206
XspI	CTAG	2 cut(s)	44, 245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.