Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001737

Physical Location & Seq

Genomic Coordinates Forward (+)

20612957 .. 20616763

Gene Structure 3807 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g27550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCGGCGAGGTTATGGTTGATGAGACTAGCCCTCCTTAGTGTAAGCGTGGTTGGGTTGGCGTACGGTAACTCGGAATCAGACGCTTTGTACACGCTGAGGAAGAGCTTGTCGGATCCCGGGAAGGTGCTGCAGAGCTGGGATCCCACCCTCGTCAACCCTTGCACTTGGTTCCACATCACCTGCAACCACCACAATCGCGTTACCCGACTGGATTTAGGTAACTCAAACCTCTCTGGACATCTGGTACCAGAACTTGGAAAGCTTGAGCATCTTCAATATCTGGAGCTTTACAGAAATAACATTCAGGGGACTATTCCAGCTGAGCTTGGTAACCTCAACAGCCTCATTAGCTTGGACTTATATAACAACAACATATCAGGGACAATTCCTCCTTCATTGGGGAAACTGAAATCACTTGTCTTCTTACGTCTAAATGACAACAGGTTAAGTGGGCCAATCCCCAGGGAGCTCGTTGGCCTTTCAAACCTCAAAGTCTTGGATGTATCGAGCAATGATTTGTGTGGAACAATTCCTACCAGTGGACCGTTTGAGCACATACCTCTAAACAACTTTGAGAACAACCTTCGACTTGAAGGTCCGGAGTTGTTGGGGCTTGCAACTTACGACACCAACTGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8

Protein Analysis

215

Amino Acids

23.64

Weight (kDa)

6.05

Isoelectric Point (pI)

26.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	24 - 63	2.8e-11	Leucine rich repeat N-terminal domain
LRR_14	PF23598	67 - 170	1.1e-14	Leucine-rich repeat region
LRR_8	PF13855	91 - 150	4e-07	Leucine rich repeat
LRR_8	PF13855	118 - 174	6e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43740 AT3G43740 AT5G21090
fragaria_vesca	FvH4_3g14800 FvH4_3g14810 FvH4_3g14820 FvH4_3g17980 FvH4_3g18020 FvH4_3g18100 FvH4_3g27550
malus_domestica	MD11G1182200.v1.1
prunus_persica	Prupe.6G154900_v2.0.a1
pyrus_communis	pycom11g15710
rosa_chinensis	RchiOBHm_Chr4g0425121 RchiOBHm_Chr5g0024351 RchiOBHm_Chr5g0030061 RchiOBHm_Chr5g0049921
rosa_laevigata	RLG00000001776 RLG00000007397 RLG00000007401 RLG00000032794 RLG00000033241 RLG00000034665
rosa_multiflora	Rmu_co8267339.1_g000001 Rmu_co8518351.1_g000002 Rmu_sc0000333.1_g000069 Rmu_sc0003368.1_g000001 Rmu_ssc0000420.1_g000033
rosa_roxburghii	Rroxscaffold_1G00031390 Rroxscaffold_1G00054880 Rroxscaffold_1G00055800 Rroxscaffold_5G00367190
rosa_rugosa	Rorug04G0201800 Rorug05G0254200
rosa_samantha	Rh3CG306200 Rh4BG264000 Rh4CG275100 Rh4DG260100 Rh5AG174000 Rh5AG328600 Rh5BG170800 Rh5BG208600 Rh5DG213000 Rh7DG379000
rosa_wichuraiana	Rw4G022350 Rw5G015690 Rw5G019100 Rw5G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	191
AasI	GACNNNNNNGTC	1 cut(s)	597
Acc36I	ACCTGC	1 cut(s)	191
Acc65I	GGTACC	1 cut(s)	247
AccB1I	GGYRCC	1 cut(s)	247
AccB7I	CCANNNNNTGG	1 cut(s)	257
AccII	CGCG	1 cut(s)	201
AccIII	TCCGGA	1 cut(s)	601
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	4 cut(s)	110, 123, 137, 150
AfaI	GTAC	3 cut(s)	65, 92, 249
AfiI	CCNNNNNNNGG	3 cut(s)	257, 401, 542
AgsI	TTSAA	3 cut(s)	278, 486, 596
AjnI	CCWGG	1 cut(s)	464
AluBI	AGCT	8 cut(s)	108, 138, 265, 289, 323, 328, 354, 472
AluI	AGCT	8 cut(s)	108, 138, 265, 289, 323, 328, 354, 472
Alw21I	GWGCWC	2 cut(s)	474, 558
Alw26I	GTCTC	1 cut(s)	19
AlwI	GGATC	4 cut(s)	110, 123, 137, 150
Ama87I	CYCGRG	1 cut(s)	119
Aor13HI	TCCGGA	1 cut(s)	601
AoxI	GGCC	2 cut(s)	455, 478
ApeKI	GCWGC	1 cut(s)	130
Asp718I	GGTACC	1 cut(s)	247
AspS9I	GGNCC	3 cut(s)	455, 545, 599
AsuC2I	CCSGG	2 cut(s)	120, 121
AsuHPI	GGTGA	1 cut(s)	172
AvaI	CYCGRG	1 cut(s)	119
AvaII	GGWCC	2 cut(s)	545, 599
BamHI	GGATCC	2 cut(s)	115, 142
BanI	GGYRCC	1 cut(s)	247
BanII	GRGCYC	1 cut(s)	474
BbsI	GAAGAC	1 cut(s)	415
Bbv12I	GWGCWC	2 cut(s)	474, 558
BbvCI	CCTCAGC	1 cut(s)	98
BbvI	GCAGC	1 cut(s)	117
BciT130I	CCWGG	1 cut(s)	466
BcnI	CCSGG	2 cut(s)	120, 121
BcoDI	GTCTC	1 cut(s)	19
BfaI	CTAG	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	131
BfuAI	ACCTGC	1 cut(s)	191
BisI	GCNGC	2 cut(s)	6, 131
BlpI	GCTNAGC	1 cut(s)	324
BlsI	GCNGC	2 cut(s)	7, 132
Bme1390I	CCNGG	3 cut(s)	120, 121, 466
Bme18I	GGWCC	2 cut(s)	545, 599
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	3 cut(s)	455, 545, 599
BmiI	GGNNCC	4 cut(s)	117, 144, 173, 249
BmrFI	CCNGG	3 cut(s)	120, 121, 466
BmsI	GCATC	1 cut(s)	280
BpiI	GAAGAC	1 cut(s)	415
BpmI	CTGGAG	1 cut(s)	305
Bpu10I	CCTNAGC	1 cut(s)	98
Bpu1102I	GCTNAGC	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	287
BpuMI	CCSGG	2 cut(s)	120, 121
BsaJI	CCNNGG	3 cut(s)	119, 464, 465
BsaWI	WCCGGW	1 cut(s)	601
BsaXI	ACNNNNNCTCC	4 cut(s)	18, 48, 376, 406
Bsc4I	CCNNNNNNNGG	3 cut(s)	257, 401, 542
Bse1I	ACTGG	2 cut(s)	216, 540
Bse3DI	GCAATG	1 cut(s)	520
BseAI	TCCGGA	1 cut(s)	601
BseBI	CCWGG	1 cut(s)	466
BseDI	CCNNGG	3 cut(s)	119, 464, 465
BseGI	GGATG	1 cut(s)	508
BseLI	CCNNNNNNNGG	3 cut(s)	257, 401, 542
BseMI	GCAATG	1 cut(s)	520
BseMII	CTCAG	2 cut(s)	89, 315
BseNI	ACTGG	2 cut(s)	216, 540
BseXI	GCAGC	1 cut(s)	117
BseYI	CCCAGC	1 cut(s)	138
Bsh1236I	CGCG	1 cut(s)	201
BshFI	GGCC	2 cut(s)	457, 480
BshNI	GGYRCC	1 cut(s)	247
BsiHKAI	GWGCWC	2 cut(s)	474, 558
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	2 cut(s)	120, 602
BsiWI	CGTACG	1 cut(s)	63
BslFI	GGGAC	2 cut(s)	325, 397
BslI	CCNNNNNNNGG	3 cut(s)	257, 401, 542
BsmAI	GTCTC	1 cut(s)	19
BsmFI	GGGAC	2 cut(s)	325, 397
BsnI	GGCC	2 cut(s)	457, 480
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	2 cut(s)	474, 558
Bsp13I	TCCGGA	1 cut(s)	601
Bsp1407I	TGTACA	1 cut(s)	90
Bsp143I	GATC	2 cut(s)	115, 142
Bsp1720I	GCTNAGC	1 cut(s)	324
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	2 cut(s)	457, 480
BspCNI	CTCAG	2 cut(s)	90, 316
BspEI	TCCGGA	1 cut(s)	601
BspFNI	CGCG	1 cut(s)	201
BspLI	GGNNCC	4 cut(s)	117, 144, 173, 249
BspMAI	CTGCAG	1 cut(s)	135
BspMI	ACCTGC	1 cut(s)	191
BspPI	GGATC	4 cut(s)	110, 123, 137, 150
BspQI	GCTCTTC	1 cut(s)	98
BspT107I	GGYRCC	1 cut(s)	247
BsrDI	GCAATG	1 cut(s)	520
BsrGI	TGTACA	1 cut(s)	90
BsrI	ACTGG	2 cut(s)	216, 540
BssECI	CCNNGG	3 cut(s)	119, 464, 465
BssMI	GATC	2 cut(s)	115, 142
Bst2UI	CCWGG	1 cut(s)	466
Bst4CI	ACNGT	2 cut(s)	68, 549
Bst6I	CTCTTC	1 cut(s)	98
BstAUI	TGTACA	1 cut(s)	90
BstC8I	GCNNGC	1 cut(s)	618
BstDEI	CTNAG	3 cut(s)	38, 98, 324
BstEII	GGTNACC	1 cut(s)	332
BstF5I	GGATG	1 cut(s)	508
BstFNI	CGCG	1 cut(s)	201
BstKTI	GATC	2 cut(s)	118, 145
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	2 cut(s)	115, 142
BstMWI	GCNNNNNNNGC	1 cut(s)	351
BstNI	CCWGG	1 cut(s)	466
BstPI	GGTNACC	1 cut(s)	332
BstSCI	CCNGG	3 cut(s)	118, 119, 464
BstSFI	CTRYAG	1 cut(s)	131
BstUI	CGCG	1 cut(s)	201
BstV1I	GCAGC	1 cut(s)	117
BstV2I	GAAGAC	1 cut(s)	415
BstX2I	RGATCY	2 cut(s)	115, 142
BstYI	RGATCY	2 cut(s)	115, 142
BsuRI	GGCC	2 cut(s)	457, 480
BtsCI	GGATG	1 cut(s)	508
BtsIMutI	CAGTG	1 cut(s)	547
BveI	ACCTGC	1 cut(s)	191
Cac8I	GCNNGC	1 cut(s)	618
Cfr13I	GGNCC	3 cut(s)	455, 545, 599
Cfr9I	CCCGGG	1 cut(s)	119
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	3 cut(s)	64, 91, 248
CviQI	GTAC	3 cut(s)	64, 91, 248
DdeI	CTNAG	3 cut(s)	38, 98, 324
DpnI	GATC	2 cut(s)	117, 144
DpnII	GATC	2 cut(s)	115, 142
DrdI	GACNNNNNNGTC	1 cut(s)	597
DseDI	GACNNNNNNGTC	1 cut(s)	597
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Ecl136II	GAGCTC	1 cut(s)	472
Eco24I	GRGCYC	1 cut(s)	474
Eco47I	GGWCC	2 cut(s)	545, 599
Eco53kI	GAGCTC	1 cut(s)	472
Eco88I	CYCGRG	1 cut(s)	119
Eco91I	GGTNACC	1 cut(s)	332
EcoICRI	GAGCTC	1 cut(s)	472
EcoO65I	GGTNACC	1 cut(s)	332
EcoRII	CCWGG	1 cut(s)	464
EcoT38I	GRGCYC	1 cut(s)	474
FaiI	YATR	5 cut(s)	16, 364, 366, 377, 560
FaqI	GGGAC	2 cut(s)	325, 397
Fnu4HI	GCNGC	2 cut(s)	6, 131
FokI	GGATG	1 cut(s)	515
FriOI	GRGCYC	1 cut(s)	474
Fsp4HI	GCNGC	2 cut(s)	6, 131
FspBI	CTAG	1 cut(s)	29
GluI	GCNGC	2 cut(s)	6, 131
GsaI	CCCAGC	1 cut(s)	142
GsuI	CTGGAG	1 cut(s)	305
HaeIII	GGCC	2 cut(s)	457, 480
HapII	CCGG	2 cut(s)	120, 602
HgaI	GACGC	1 cut(s)	92
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	1 cut(s)	77
HpaII	CCGG	2 cut(s)	120, 602
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	3 cut(s)	93, 157, 545
Hpy188I	TCNGA	3 cut(s)	76, 82, 115
Hpy188III	TCNNGA	3 cut(s)	237, 284, 602
Hpy8I	GTNNAC	3 cut(s)	93, 157, 545
HpyAV	CCTTC	4 cut(s)	118, 405, 590, 596
HpyCH4III	ACNGT	2 cut(s)	68, 549
HpyCH4IV	ACGT	1 cut(s)	430
HpyCH4V	TGCA	4 cut(s)	133, 165, 186, 620
HpyF10VI	GCNNNNNNNGC	1 cut(s)	351
HpyF3I	CTNAG	3 cut(s)	38, 98, 324
HpySE526I	ACGT	1 cut(s)	430
Kpn2I	TCCGGA	1 cut(s)	601
KpnI	GGTACC	1 cut(s)	251
Kzo9I	GATC	2 cut(s)	115, 142
LguI	GCTCTTC	1 cut(s)	98
LmnI	GCTCC	2 cut(s)	286, 469
Lsp1109I	GCAGC	1 cut(s)	117
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	1 cut(s)	430
MaeIII	GTNAC	4 cut(s)	68, 202, 221, 332
MalI	GATC	2 cut(s)	117, 144
MboI	GATC	2 cut(s)	115, 142
MboII	GAAGA	3 cut(s)	115, 266, 415
MflI	RGATCY	2 cut(s)	115, 142
MhlI	GDGCHC	2 cut(s)	474, 558
MluCI	AATT	2 cut(s)	387, 531
MmeI	TCCRAC	1 cut(s)	93
MroI	TCCGGA	1 cut(s)	601
MseI	TTAA	1 cut(s)	449
MspA1I	CMGCKG	1 cut(s)	323
MspI	CCGG	2 cut(s)	120, 602
MspR9I	CCNGG	3 cut(s)	120, 121, 466
MvaI	CCWGG	1 cut(s)	466
MvnI	CGCG	1 cut(s)	201
MwoI	GCNNNNNNNGC	1 cut(s)	351
NciI	CCSGG	2 cut(s)	120, 121
NdeII	GATC	2 cut(s)	115, 142
NlaIV	GGNNCC	4 cut(s)	117, 144, 173, 249
PaqCI	CACCTGC	1 cut(s)	191
PasI	CCCWGGG	1 cut(s)	465
PciSI	GCTCTTC	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	1 cut(s)	205
PfeI	GAWTC	1 cut(s)	77
Pfl23II	CGTACG	1 cut(s)	63
PflMI	CCANNNNNTGG	1 cut(s)	257
PkrI	GCNGC	2 cut(s)	7, 132
Psp124BI	GAGCTC	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	464
PspEI	GGTNACC	1 cut(s)	332
PspFI	CCCAGC	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	464
PspLI	CGTACG	1 cut(s)	63
PspN4I	GGNNCC	4 cut(s)	117, 144, 173, 249
PspPI	GGNCC	3 cut(s)	455, 545, 599
PsrI	GAACNNNNNNTAC	2 cut(s)	520, 552
PstI	CTGCAG	1 cut(s)	135
PsuI	RGATCY	2 cut(s)	115, 142
PvuII	CAGCTG	1 cut(s)	323
RsaI	GTAC	3 cut(s)	65, 92, 249
RsaNI	GTAC	3 cut(s)	64, 91, 248
SacI	GAGCTC	1 cut(s)	474
SapI	GCTCTTC	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	449
SatI	GCNGC	2 cut(s)	6, 131
Sau3AI	GATC	2 cut(s)	115, 142
Sau96I	GGNCC	3 cut(s)	455, 545, 599
ScrFI	CCNGG	3 cut(s)	120, 121, 466
SduI	GDGCHC	2 cut(s)	474, 558
SfaNI	GCATC	1 cut(s)	280
SfcI	CTRYAG	1 cut(s)	131
SinI	GGWCC	2 cut(s)	545, 599
SmaI	CCCGGG	1 cut(s)	121
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	2 cut(s)	387, 531
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	29
SstI	GAGCTC	1 cut(s)	474
StyD4I	CCNGG	3 cut(s)	118, 119, 464
TaaI	ACNGT	2 cut(s)	68, 549
TaiI	ACGT	1 cut(s)	433
TaqI	TCGA	2 cut(s)	509, 589
TasI	AATT	2 cut(s)	387, 531
TatI	WGTACW	1 cut(s)	90
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	1 cut(s)	449
Tru9I	TTAA	1 cut(s)	449
TscAI	CASTG	1 cut(s)	547
TseI	GCWGC	1 cut(s)	130
TspDTI	ATGAA	1 cut(s)	387
TspMI	CCCGGG	1 cut(s)	119
TspRI	CASTG	1 cut(s)	547
Van91I	CCANNNNNTGG	1 cut(s)	257
VpaK11BI	GGWCC	2 cut(s)	545, 599
XmaI	CCCGGG	1 cut(s)	119
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.