Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001737

Physical Location & Seq

Genomic Coordinates Reverse (-)

17912522 .. 17913106

Gene Structure 585 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG170800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGAGGACGACCTGCTGGATACTGTTGACTCTAACCCTAGGCGCAAGTCTCATTCCTGGAGCACACCCTCTTTCAGAGACAGAAGCTTTGAATGCGTTTAAGAAGAACTTAAGTGATCCGCAAAACGTGCTCAGCACTTGGAATGCCAATCAAGCCAATCCATGCAGTTGGTCACACATCGTCTGCAATCAAGACAATCAGGTCACTGGAGTGTTCTTAATTAACAGCCAGCTTTCTGGACATCTGGTACCTGAACTTGGATCGCTTTCGGCTCTCGAGCGGCTGATTCTTCCTCAGAATGACATCTCAGGAACAATTCCATCTGAGCTTGGTAACCTGAAGACACTCCAGACTCTCATATTAAGTTATAATAGATTGTCGGGCAGCATTCCTCCTACACTGGGTGATTTGCAATCACTTCGTACCTTGGGTCTCGATAATAACGAATTGAGTGGGAAAATCCCTTCCGAAATTGCAACCATTAAAAGCCTCCAAATTGCGTCTTTTATCGACAACAAAAATTTATGTTGGGAGTTTTCGCCGACACCAATATATAAAGGCAGTTACCCATTATGCCAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8

Protein Analysis

194

Amino Acids

21.11

Weight (kDa)

5.87

Isoelectric Point (pI)

34.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	25 - 63	1.6e-12	Leucine rich repeat N-terminal domain
LRR_14	PF23598	77 - 171	2.8e-09	Leucine-rich repeat region
LRR_8	PF13855	91 - 150	8.5e-08	Leucine rich repeat
LRR_4	PF12799	115 - 150	1.7e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43740 AT3G43740 AT5G21090
fragaria_vesca	FvH4_3g14800 FvH4_3g14810 FvH4_3g14820 FvH4_3g17980 FvH4_3g18020 FvH4_3g18100 FvH4_3g27550
malus_domestica	MD11G1182200.v1.1
prunus_persica	Prupe.6G154900_v2.0.a1
pyrus_communis	pycom11g15710
rosa_chinensis	RchiOBHm_Chr4g0425121 RchiOBHm_Chr5g0024351 RchiOBHm_Chr5g0030061 RchiOBHm_Chr5g0049921
rosa_laevigata	RLG00000001776 RLG00000007397 RLG00000007401 RLG00000032794 RLG00000033241 RLG00000034665
rosa_multiflora	Rmu_co8267339.1_g000001 Rmu_co8518351.1_g000002 Rmu_sc0000333.1_g000069 Rmu_sc0003368.1_g000001 Rmu_ssc0000420.1_g000033
rosa_roxburghii	Rroxscaffold_1G00031390 Rroxscaffold_1G00054880 Rroxscaffold_1G00055800 Rroxscaffold_5G00367190
rosa_rugosa	Rorug04G0201800 Rorug05G0254200
rosa_samantha	Rh3CG306200 Rh4BG264000 Rh4CG275100 Rh4DG260100 Rh5AG174000 Rh5AG328600 Rh5BG170800 Rh5BG208600 Rh5DG213000 Rh7DG379000
rosa_wichuraiana	Rw4G022350 Rw5G015690 Rw5G019100 Rw5G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	369
AasI	GACNNNNNNGTC	1 cut(s)	200
Acc36I	ACCTGC	1 cut(s)	20
Acc65I	GGTACC	1 cut(s)	247
AccB1I	GGYRCC	1 cut(s)	247
AccBSI	CCGCTC	1 cut(s)	280
AciI	CCGC	2 cut(s)	119, 280
AclWI	GGATC	2 cut(s)	110, 268
AcsI	RAATTY	1 cut(s)	520
AcuI	CTGAAG	1 cut(s)	359
AdeI	CACNNNGTG	1 cut(s)	404
AfaI	GTAC	2 cut(s)	249, 424
AfiI	CCNNNNNNNGG	2 cut(s)	257, 401
AflII	CTTAAG	1 cut(s)	109
AgsI	TTSAA	1 cut(s)	91
AjnI	CCWGG	1 cut(s)	55
AleI	CACNNNNGTG	1 cut(s)	209
AluBI	AGCT	3 cut(s)	86, 232, 328
AluI	AGCT	3 cut(s)	86, 232, 328
Alw21I	GWGCWC	2 cut(s)	64, 132
Alw26I	GTCTC	3 cut(s)	53, 71, 437
AlwI	GGATC	2 cut(s)	110, 268
Ama87I	CYCGRG	1 cut(s)	275
ApeKI	GCWGC	1 cut(s)	384
ApoI	RAATTY	1 cut(s)	520
ArsI	GACNNNNNNTTYG	2 cut(s)	70, 102
Asp718I	GGTACC	1 cut(s)	247
AspA2I	CCTAGG	1 cut(s)	37
AspLEI	GCGC	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	416
AvaI	CYCGRG	1 cut(s)	275
AvrII	CCTAGG	1 cut(s)	37
BanI	GGYRCC	1 cut(s)	247
BbsI	GAAGAC	1 cut(s)	347
Bbv12I	GWGCWC	2 cut(s)	64, 132
BbvI	GCAGC	1 cut(s)	396
BccI	CCATC	1 cut(s)	328
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BciT130I	CCWGG	1 cut(s)	57
BciVI	GTATCC	1 cut(s)	12
BcoDI	GTCTC	3 cut(s)	53, 71, 437
BfaI	CTAG	1 cut(s)	38
BfrI	CTTAAG	1 cut(s)	109
BfuAI	ACCTGC	1 cut(s)	20
BfuI	GTATCC	1 cut(s)	12
BisI	GCNGC	2 cut(s)	281, 385
BlnI	CCTAGG	1 cut(s)	37
BlpI	GCTNAGC	1 cut(s)	131
BlsI	GCNGC	2 cut(s)	282, 386
Bme1390I	CCNGG	1 cut(s)	57
BmeT110I	CYCGRG	1 cut(s)	275
BmiI	GGNNCC	1 cut(s)	249
BmrFI	CCNGG	1 cut(s)	57
BmrI	ACTGGG	1 cut(s)	410
BmuI	ACTGGG	1 cut(s)	410
BpiI	GAAGAC	1 cut(s)	347
BpmI	CTGGAG	3 cut(s)	78, 228, 332
Bpu1102I	GCTNAGC	1 cut(s)	131
BsaI	GGTCTC	1 cut(s)	437
BsaJI	CCNNGG	2 cut(s)	37, 426
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 401
Bse1I	ACTGG	2 cut(s)	211, 405
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	37, 426
BseLI	CCNNNNNNNGG	2 cut(s)	257, 401
BseMII	CTCAG	4 cut(s)	145, 308, 315, 321
BseNI	ACTGG	2 cut(s)	211, 405
BseXI	GCAGC	1 cut(s)	396
BshNI	GGYRCC	1 cut(s)	247
BsiHKAI	GWGCWC	2 cut(s)	64, 132
BsiHKCI	CYCGRG	1 cut(s)	275
BslI	CCNNNNNNNGG	2 cut(s)	257, 401
BsmAI	GTCTC	3 cut(s)	53, 71, 437
BsmI	GAATGC	3 cut(s)	97, 148, 387
Bso31I	GGTCTC	1 cut(s)	437
BsoBI	CYCGRG	1 cut(s)	275
Bsp1286I	GDGCHC	2 cut(s)	64, 132
Bsp143I	GATC	2 cut(s)	115, 260
Bsp1720I	GCTNAGC	1 cut(s)	131
BspACI	CCGC	2 cut(s)	119, 280
BspCNI	CTCAG	4 cut(s)	144, 307, 316, 320
BspLI	GGNNCC	1 cut(s)	249
BspMI	ACCTGC	1 cut(s)	20
BspPI	GGATC	2 cut(s)	110, 268
BspT107I	GGYRCC	1 cut(s)	247
BspTI	CTTAAG	1 cut(s)	109
BspTNI	GGTCTC	1 cut(s)	437
BsrBI	CCGCTC	1 cut(s)	280
BsrI	ACTGG	2 cut(s)	211, 405
BssECI	CCNNGG	2 cut(s)	37, 426
BssMI	GATC	2 cut(s)	115, 260
BssT1I	CCWWGG	2 cut(s)	37, 426
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	1 cut(s)	24
BstAFI	CTTAAG	1 cut(s)	109
BstAPI	GCANNNNNTGC	1 cut(s)	127
BstC8I	GCNNGC	1 cut(s)	230
BstDEI	CTNAG	4 cut(s)	131, 294, 307, 324
BstEII	GGTNACC	1 cut(s)	332
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	2 cut(s)	118, 263
BstMAI	GTCTC	3 cut(s)	53, 71, 437
BstMBI	GATC	2 cut(s)	115, 260
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 127, 152
BstNI	CCWGG	1 cut(s)	57
BstPI	GGTNACC	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	55
BstV1I	GCAGC	1 cut(s)	396
BstV2I	GAAGAC	1 cut(s)	347
BstXI	CCANNNNNNTGG	2 cut(s)	168, 236
BsuI	GTATCC	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	204, 398
BveI	ACCTGC	1 cut(s)	20
Cac8I	GCNNGC	1 cut(s)	230
CfoI	GCGC	1 cut(s)	44
CseI	GACGC	1 cut(s)	489
Csp6I	GTAC	2 cut(s)	248, 423
CviAII	CATG	1 cut(s)	162
CviJI	RGCY	8 cut(s)	86, 155, 228, 232, 272, 283, 328, 489
CviKI_1	RGCY	8 cut(s)	86, 155, 228, 232, 272, 283, 328, 489
CviQI	GTAC	2 cut(s)	248, 423
DdeI	CTNAG	4 cut(s)	131, 294, 307, 324
DpnI	GATC	2 cut(s)	117, 262
DpnII	GATC	2 cut(s)	115, 260
DraIII	CACNNNGTG	1 cut(s)	404
DrdI	GACNNNNNNGTC	1 cut(s)	200
DseDI	GACNNNNNNGTC	1 cut(s)	200
Eco130I	CCWWGG	2 cut(s)	37, 426
Eco31I	GGTCTC	1 cut(s)	437
Eco57I	CTGAAG	1 cut(s)	359
Eco88I	CYCGRG	1 cut(s)	275
Eco91I	GGTNACC	1 cut(s)	332
EcoO65I	GGTNACC	1 cut(s)	332
EcoRII	CCWGG	1 cut(s)	55
EcoT14I	CCWWGG	2 cut(s)	37, 426
ErhI	CCWWGG	2 cut(s)	37, 426
FaeI	CATG	1 cut(s)	165
FaiI	YATR	7 cut(s)	163, 359, 369, 526, 553, 555, 574
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FatI	CATG	1 cut(s)	161
Fnu4HI	GCNGC	2 cut(s)	281, 385
Fsp4HI	GCNGC	2 cut(s)	281, 385
FspBI	CTAG	1 cut(s)	38
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	2 cut(s)	281, 385
GsuI	CTGGAG	3 cut(s)	78, 228, 332
HgaI	GACGC	1 cut(s)	489
HhaI	GCGC	1 cut(s)	44
Hin1II	CATG	1 cut(s)	165
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HincII	GTYRAC	1 cut(s)	27
HindII	GTYRAC	1 cut(s)	27
HindIII	AAGCTT	1 cut(s)	84
HinfI	GANTC	3 cut(s)	28, 286, 352
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	1 cut(s)	27
Hpy188I	TCNGA	4 cut(s)	76, 297, 325, 469
Hpy188III	TCNNGA	6 cut(s)	191, 237, 275, 309, 349, 434
Hpy8I	GTNNAC	1 cut(s)	27
HpyAV	CCTTC	1 cut(s)	474
HpyCH4III	ACNGT	1 cut(s)	24
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	4 cut(s)	165, 186, 412, 476
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 127, 152
HpyF3I	CTNAG	4 cut(s)	131, 294, 307, 324
HpySE526I	ACGT	1 cut(s)	126
Hsp92II	CATG	1 cut(s)	165
HspAI	GCGC	1 cut(s)	42
KpnI	GGTACC	1 cut(s)	251
Kzo9I	GATC	2 cut(s)	115, 260
LmnI	GCTCC	1 cut(s)	59
Lsp1109I	GCAGC	1 cut(s)	396
MaeI	CTAG	1 cut(s)	38
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	4 cut(s)	171, 202, 332, 563
MalI	GATC	2 cut(s)	117, 262
MbiI	CCGCTC	1 cut(s)	280
MboI	GATC	2 cut(s)	115, 260
MboII	GAAGA	3 cut(s)	115, 281, 352
MhlI	GDGCHC	2 cut(s)	64, 132
MluCI	AATT	6 cut(s)	219, 315, 446, 471, 495, 520
MlyI	GAGTC	2 cut(s)	22, 346
MnlI	CCTC	4 cut(s)	78, 303, 402, 500
MseI	TTAA	6 cut(s)	99, 110, 218, 222, 362, 483
MslI	CAYNNNNRTG	1 cut(s)	209
MspCI	CTTAAG	1 cut(s)	109
MspR9I	CCNGG	1 cut(s)	57
Mva1269I	GAATGC	3 cut(s)	97, 148, 387
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	3 cut(s)	92, 127, 152
NdeII	GATC	2 cut(s)	115, 260
NlaIII	CATG	1 cut(s)	165
NlaIV	GGNNCC	1 cut(s)	249
NmuCI	GTSAC	2 cut(s)	171, 202
OliI	CACNNNNGTG	1 cut(s)	209
PacI	TTAATTAA	1 cut(s)	222
PaeR7I	CTCGAG	1 cut(s)	275
PcsI	WCGNNNNNNNCGW	1 cut(s)	441
PctI	GAATGC	3 cut(s)	97, 148, 387
PfeI	GAWTC	1 cut(s)	286
PfoI	TCCNGGA	1 cut(s)	55
PkrI	GCNGC	2 cut(s)	282, 386
PleI	GAGTC	2 cut(s)	22, 346
PpsI	GAGTC	2 cut(s)	22, 346
PsiI	TTATAA	1 cut(s)	369
Psp6I	CCWGG	1 cut(s)	55
PspEI	GGTNACC	1 cut(s)	332
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	249
RsaI	GTAC	2 cut(s)	249, 424
RsaNI	GTAC	2 cut(s)	248, 423
RseI	CAYNNNNRTG	1 cut(s)	209
SaqAI	TTAA	6 cut(s)	99, 110, 218, 222, 362, 483
SatI	GCNGC	2 cut(s)	281, 385
Sau3AI	GATC	2 cut(s)	115, 260
SchI	GAGTC	2 cut(s)	22, 346
ScrFI	CCNGG	1 cut(s)	57
SduI	GDGCHC	2 cut(s)	64, 132
SetI	ASST	9 cut(s)	14, 88, 129, 204, 234, 253, 330, 339, 428
Sfr274I	CTCGAG	1 cut(s)	275
SlaI	CTCGAG	1 cut(s)	275
SmiMI	CAYNNNNRTG	1 cut(s)	209
SmlI	CTYRAG	2 cut(s)	109, 275
SmoI	CTYRAG	2 cut(s)	109, 275
Sse9I	AATT	6 cut(s)	219, 315, 446, 471, 495, 520
SsiI	CCGC	2 cut(s)	119, 280
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	2 cut(s)	37, 426
TaaI	ACNGT	1 cut(s)	24
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	3 cut(s)	276, 435, 510
TasI	AATT	6 cut(s)	219, 315, 446, 471, 495, 520
TauI	GCSGC	1 cut(s)	283
TfiI	GAWTC	1 cut(s)	286
Tru1I	TTAA	6 cut(s)	99, 110, 218, 222, 362, 483
Tru9I	TTAA	6 cut(s)	99, 110, 218, 222, 362, 483
TscAI	CASTG	2 cut(s)	211, 405
TseFI	GTSAC	2 cut(s)	171, 202
TseI	GCWGC	1 cut(s)	384
Tsp45I	GTSAC	2 cut(s)	171, 202
TspRI	CASTG	2 cut(s)	211, 405
Vha464I	CTTAAG	1 cut(s)	109
XapI	RAATTY	1 cut(s)	520
XhoI	CTCGAG	1 cut(s)	275
XmaJI	CCTAGG	1 cut(s)	37
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.