Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001737

Physical Location & Seq

Genomic Coordinates Reverse (-)

11531121 .. 11531648

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g18100.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCAATGGGGATAACTTGTTGGATGTTGTTTATCGTAACCCTAAGCGCAAGTCTCATTCATGAAGCATACACTCTCTCAGAGGTAGAAGTTTTGCTTAAATTCAAGGCGAGCATTGTTGATCCCTTATATGTGCTCAGTGGTTGGAAAACAACAAAGCCTGGCTATTATCCATGTTGGTGGTTAGGCATTCAGTGCAATAATGAAGGGAAGGTCATTGAATTGTCCTTAGATGACTTCAAGCTAGCCGGGCAACTTCCACCCGAACTCGGACAACTTTCGGCTCTCCAGACTCTAAAACTAGATTCAAACAACATCACAGGAACAATACCAGCTGAGCTTGGTAACCTAAAGGGACTAGTGGAGCTCAATTTTAGCTGCAACAAGTTAACCGGGAAAATCCCATCCGGACTTGGAAGCCTTCCGAACCTCGTGAAAGCTGATTTTTCCAACAATGACAACTTATGTTGGGATTTTTGGCCTACTCCAAAATATGTGGGAAGTTATGATTTATGCCAGAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8

Protein Analysis

176

Amino Acids

19.35

Weight (kDa)

5.38

Isoelectric Point (pI)

21.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	27 - 67	1.4e-08	Leucine rich repeat N-terminal domain
LRR_14	PF23598	84 - 145	3.3e-07	Leucine-rich repeat region
LRR_8	PF13855	95 - 152	6.8e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43740 AT3G43740 AT5G21090
fragaria_vesca	FvH4_3g14800 FvH4_3g14810 FvH4_3g14820 FvH4_3g17980 FvH4_3g18020 FvH4_3g18100 FvH4_3g27550
malus_domestica	MD11G1182200.v1.1
prunus_persica	Prupe.6G154900_v2.0.a1
pyrus_communis	pycom11g15710
rosa_chinensis	RchiOBHm_Chr4g0425121 RchiOBHm_Chr5g0024351 RchiOBHm_Chr5g0030061 RchiOBHm_Chr5g0049921
rosa_laevigata	RLG00000001776 RLG00000007397 RLG00000007401 RLG00000032794 RLG00000033241 RLG00000034665
rosa_multiflora	Rmu_co8267339.1_g000001 Rmu_co8518351.1_g000002 Rmu_sc0000333.1_g000069 Rmu_sc0003368.1_g000001 Rmu_ssc0000420.1_g000033
rosa_roxburghii	Rroxscaffold_1G00031390 Rroxscaffold_1G00054880 Rroxscaffold_1G00055800 Rroxscaffold_5G00367190
rosa_rugosa	Rorug04G0201800 Rorug05G0254200
rosa_samantha	Rh3CG306200 Rh4BG264000 Rh4CG275100 Rh4DG260100 Rh5AG174000 Rh5AG328600 Rh5BG170800 Rh5BG208600 Rh5DG213000 Rh7DG379000
rosa_wichuraiana	Rw4G022350 Rw5G015690 Rw5G019100 Rw5G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	407
AclWI	GGATC	1 cut(s)	116
AcsI	RAATTY	1 cut(s)	101
AfiI	CCNNNNNNNGG	1 cut(s)	269
AgsI	TTSAA	4 cut(s)	106, 221, 241, 309
AhlI	ACTAGT	1 cut(s)	358
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	6 cut(s)	244, 335, 340, 367, 378, 440
AluI	AGCT	6 cut(s)	244, 335, 340, 367, 378, 440
Alw21I	GWGCWC	2 cut(s)	138, 369
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	1 cut(s)	116
Aor13HI	TCCGGA	1 cut(s)	407
AoxI	GGCC	1 cut(s)	479
ApeKI	GCWGC	1 cut(s)	378
ApoI	RAATTY	1 cut(s)	101
AspLEI	GCGC	1 cut(s)	50
AsuC2I	CCSGG	2 cut(s)	250, 394
AsuNHI	GCTAGC	1 cut(s)	244
BanII	GRGCYC	1 cut(s)	369
BauI	CACGAG	1 cut(s)	431
Bbv12I	GWGCWC	2 cut(s)	138, 369
BbvI	GCAGC	1 cut(s)	365
BccI	CCATC	1 cut(s)	412
BciT130I	CCWGG	1 cut(s)	162
BcnI	CCSGG	2 cut(s)	250, 394
BcoDI	GTCTC	1 cut(s)	59
BcuI	ACTAGT	1 cut(s)	358
BfaI	CTAG	3 cut(s)	245, 302, 359
BisI	GCNGC	1 cut(s)	379
BlpI	GCTNAGC	1 cut(s)	336
BlsI	GCNGC	1 cut(s)	380
Bme1390I	CCNGG	3 cut(s)	162, 250, 394
BmrFI	CCNGG	3 cut(s)	162, 250, 394
BmtI	GCTAGC	1 cut(s)	248
BpmI	CTGGAG	1 cut(s)	272
Bpu10I	CCTNAGC	1 cut(s)	44
Bpu1102I	GCTNAGC	1 cut(s)	336
BpuMI	CCSGG	2 cut(s)	250, 394
BsaWI	WCCGGW	1 cut(s)	407
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
Bse3DI	GCAATG	1 cut(s)	12
BseAI	TCCGGA	1 cut(s)	407
BseBI	CCWGG	1 cut(s)	162
BseGI	GGATG	2 cut(s)	30, 404
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	3 cut(s)	93, 151, 327
BseXI	GCAGC	1 cut(s)	365
BshFI	GGCC	1 cut(s)	481
BsiHKAI	GWGCWC	2 cut(s)	138, 369
BsiSI	CCGG	3 cut(s)	249, 393, 408
BslFI	GGGAC	1 cut(s)	369
BslI	CCNNNNNNNGG	1 cut(s)	269
BsmAI	GTCTC	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	369
BsmI	GAATGC	1 cut(s)	189
BsnI	GGCC	1 cut(s)	481
Bsp1286I	GDGCHC	2 cut(s)	138, 369
Bsp13I	TCCGGA	1 cut(s)	407
Bsp143I	GATC	1 cut(s)	121
Bsp1720I	GCTNAGC	1 cut(s)	336
BspANI	GGCC	1 cut(s)	481
BspCNI	CTCAG	3 cut(s)	92, 150, 328
BspEI	TCCGGA	1 cut(s)	407
BspHI	TCATGA	1 cut(s)	61
BspOI	GCTAGC	1 cut(s)	248
BspPI	GGATC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	12
BssMI	GATC	1 cut(s)	121
BssSI	CACGAG	1 cut(s)	431
Bst2BI	CACGAG	1 cut(s)	431
Bst2UI	CCWGG	1 cut(s)	162
BstAPI	GCANNNNNTGC	1 cut(s)	195
BstC8I	GCNNGC	2 cut(s)	112, 246
BstDEI	CTNAG	5 cut(s)	44, 79, 137, 229, 336
BstEII	GGTNACC	1 cut(s)	344
BstF5I	GGATG	2 cut(s)	30, 404
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	1 cut(s)	124
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	2 cut(s)	195, 250
BstNI	CCWGG	1 cut(s)	162
BstPI	GGTNACC	1 cut(s)	344
BstSCI	CCNGG	3 cut(s)	160, 248, 392
BstV1I	GCAGC	1 cut(s)	365
BstXI	CCANNNNNNTGG	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	481
BtsCI	GGATG	2 cut(s)	30, 404
BtsIMutI	CAGTG	2 cut(s)	145, 200
Cac8I	GCNNGC	2 cut(s)	112, 246
CciI	TCATGA	1 cut(s)	61
CfoI	GCGC	1 cut(s)	50
CspCI	CAANNNNNGTGG	2 cut(s)	477, 512
CviAII	CATG	2 cut(s)	62, 174
DdeI	CTNAG	5 cut(s)	44, 79, 137, 229, 336
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
Ecl136II	GAGCTC	1 cut(s)	367
Eco24I	GRGCYC	1 cut(s)	369
Eco53kI	GAGCTC	1 cut(s)	367
Eco91I	GGTNACC	1 cut(s)	344
EcoICRI	GAGCTC	1 cut(s)	367
EcoO65I	GGTNACC	1 cut(s)	344
EcoRII	CCWGG	1 cut(s)	160
EcoT38I	GRGCYC	1 cut(s)	369
FaeI	CATG	2 cut(s)	65, 177
FaiI	YATR	9 cut(s)	63, 70, 130, 132, 175, 466, 495, 507, 514
FalI	AAGNNNNNCTT	2 cut(s)	81, 113
FaqI	GGGAC	1 cut(s)	369
FatI	CATG	2 cut(s)	61, 173
Fnu4HI	GCNGC	1 cut(s)	379
FokI	GGATG	2 cut(s)	37, 391
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	1 cut(s)	379
FspBI	CTAG	3 cut(s)	245, 302, 359
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	1 cut(s)	379
GsuI	CTGGAG	1 cut(s)	272
HaeIII	GGCC	1 cut(s)	481
HapII	CCGG	3 cut(s)	249, 393, 408
HhaI	GCGC	1 cut(s)	50
Hin1II	CATG	2 cut(s)	65, 177
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HinfI	GANTC	2 cut(s)	292, 305
HpaI	GTTAAC	1 cut(s)	390
HpaII	CCGG	3 cut(s)	249, 393, 408
Hpy166II	GTNNAC	1 cut(s)	390
Hpy188I	TCNGA	3 cut(s)	82, 272, 426
Hpy188III	TCNNGA	4 cut(s)	62, 289, 408, 433
Hpy8I	GTNNAC	1 cut(s)	390
HpyAV	CCTTC	3 cut(s)	200, 205, 431
HpyCH4V	TGCA	2 cut(s)	198, 381
HpyF10VI	GCNNNNNNNGC	2 cut(s)	195, 250
HpyF3I	CTNAG	5 cut(s)	44, 79, 137, 229, 336
Hsp92II	CATG	2 cut(s)	65, 177
HspAI	GCGC	1 cut(s)	48
Kpn2I	TCCGGA	1 cut(s)	407
KspAI	GTTAAC	1 cut(s)	390
Kzo9I	GATC	1 cut(s)	121
LmnI	GCTCC	1 cut(s)	364
LpnPI	CCDG	8 cut(s)	147, 174, 262, 302, 306, 345, 406, 421
Lsp1109I	GCAGC	1 cut(s)	365
MaeI	CTAG	3 cut(s)	245, 302, 359
MaeIII	GTNAC	2 cut(s)	37, 344
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MhlI	GDGCHC	2 cut(s)	138, 369
MluCI	AATT	3 cut(s)	101, 221, 370
MlyI	GAGTC	1 cut(s)	286
MmeI	TCCRAC	2 cut(s)	125, 474
MnlI	CCTC	2 cut(s)	76, 440
MroI	TCCGGA	1 cut(s)	407
MseI	TTAA	2 cut(s)	99, 389
MslI	CAYNNNNRTG	1 cut(s)	178
MspA1I	CMGCKG	1 cut(s)	335
MspI	CCGG	3 cut(s)	249, 393, 408
MspR9I	CCNGG	3 cut(s)	162, 250, 394
Mva1269I	GAATGC	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	2 cut(s)	195, 250
NciI	CCSGG	2 cut(s)	250, 394
NdeII	GATC	1 cut(s)	121
NheI	GCTAGC	1 cut(s)	244
NlaIII	CATG	2 cut(s)	65, 177
PagI	TCATGA	1 cut(s)	61
PctI	GAATGC	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	305
PkrI	GCNGC	1 cut(s)	380
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
Psp124BI	GAGCTC	1 cut(s)	369
Psp6I	CCWGG	1 cut(s)	160
PspEI	GGTNACC	1 cut(s)	344
PspGI	CCWGG	1 cut(s)	160
PvuII	CAGCTG	1 cut(s)	335
RseI	CAYNNNNRTG	1 cut(s)	178
SacI	GAGCTC	1 cut(s)	369
SaqAI	TTAA	2 cut(s)	99, 389
SatI	GCNGC	1 cut(s)	379
Sau3AI	GATC	1 cut(s)	121
SchI	GAGTC	1 cut(s)	286
ScrFI	CCNGG	3 cut(s)	162, 250, 394
SduI	GDGCHC	2 cut(s)	138, 369
SmiMI	CAYNNNNRTG	1 cut(s)	178
SpeI	ACTAGT	1 cut(s)	358
Sse9I	AATT	3 cut(s)	101, 221, 370
SspMI	CTAG	3 cut(s)	245, 302, 359
SstI	GAGCTC	1 cut(s)	369
StyD4I	CCNGG	3 cut(s)	160, 248, 392
TasI	AATT	3 cut(s)	101, 221, 370
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	2 cut(s)	99, 389
Tru9I	TTAA	2 cut(s)	99, 389
TscAI	CASTG	2 cut(s)	145, 200
TseI	GCWGC	1 cut(s)	378
TspDTI	ATGAA	3 cut(s)	50, 78, 219
TspRI	CASTG	2 cut(s)	145, 200
XapI	RAATTY	1 cut(s)	101
XspI	CTAG	3 cut(s)	245, 302, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.