RLG00000032794

Somatic embryogenesis receptor kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
19115972 .. 19120842
4871 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032794

Sequence Viewer

Length: 1053 bp
ATGAGGACGACCTGCTGGATACTATTGACTTTAACCCTAGGCGCAAGTCTCATTCCTGGAGCACACCCTCTTTCACAGACAGAAGCTTTGAATGCGTTTAAGAGGAACTTAACTGATCCGCTAAATGTGCTTAGCACTTGGAATGCCAATCATGCCAATCCATGCAGTTGGTCACACATCGTCTGCAATCAAGACAAACACGTCACTGGAGTGTTCTTAATTAACAGCCAGCTTTCTGGACATCTGGTACCTGAACTTGGATCGCTTTTGGCTCTCGAGCGGCTATTTCTTCCTGAGAATGACATCTCAGGAACAATTCCATCTGAGCTTGGTGTGGTATTGGTATTGGAGGGGTCTTCCCAATTGAATCCGGAGAGCTTATTTGCTATTAGAGAGATGTTTCTAACAATATATGGCACAGGTTCATCCAGTGACTTGCTACTAGATTGGAATAAGCGTTTCAACATAATTGAAGGAATTGCTCAAGGATTGTTCTACTTGCACAAATACTCCAGACTGAGAGTAATTCATAATGTAAAAGCTAGTAATGTTCTACTTGATGCACAAATGAATCCCAAAGTTGCTAACTTTGGTTTAGCAAAGATTTGTGCAGATGATGAAGAGACAGTAGGAACTGCGGCAATTTGTGGGACAATGCAAGGGTTACATGGCTCCCGAATACCTCATAACGGGCATCCTTTCCATGAAAACCGATGTCTACAAGATCGGATTCGCACCTCAGTACCAGACCACCTGACATTCTTCTTCAGTCAGTGCTCGACGCCTGTGATCAAGACACGAACCGGCGCCGCCTTCTTGCTCAGCCTGCAGCACCGAACACCGCTGATTGCTAACAGAGAACCTGACGTGCCTATTTACAGAGGACCAGCCGACCAACAATCCACTTCAAATCCGGCAGCGATCGAAGTTACACGACGCGTACCTAGGGTCCTAGACCACCGGCGACGTCGAGCATCAGCGTTTGTTGTTATACGTGACCCGACCCGCTTCATCAGGACCCGCTCTGTCAGATCCGACCCAGTTGAGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

351

Amino Acids

38.9

Weight (kDa)

8.9

Isoelectric Point (pI)

43.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 25 - 63 3.2e-12 Leucine rich repeat N-terminal domain
Pkinase PF00069 153 - 218 6.4e-07 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 200
AatII GACGTC 1 cut(s) 970
Acc36I ACCTGC 1 cut(s) 20
Acc65I GGTACC 1 cut(s) 247
AccB1I GGYRCC 2 cut(s) 247, 806
AccBSI CCGCTC 2 cut(s) 280, 1023
AccI GTMKAC 1 cut(s) 718
AccII CGCG 1 cut(s) 939
AccIII TCCGGA 1 cut(s) 370
AciI CCGC 7 cut(s) 119, 280, 638, 810, 842, 1006, 1021
AclWI GGATC 3 cut(s) 110, 268, 1026
AcuI CTGAAG 1 cut(s) 751
AcyI GRCGYC 3 cut(s) 782, 807, 967
AfaI GTAC 3 cut(s) 249, 744, 942
AfiI CCNNNNNNNGG 2 cut(s) 257, 689
AflIII ACRYGT 2 cut(s) 199, 937
AgsI TTSAA 5 cut(s) 91, 367, 463, 473, 909
AjiI CACGTC 2 cut(s) 202, 868
AjnI CCWGG 1 cut(s) 55
AleI CACNNNNGTG 1 cut(s) 209
AluBI AGCT 5 cut(s) 86, 232, 328, 378, 542
AluI AGCT 5 cut(s) 86, 232, 328, 378, 542
Alw21I GWGCWC 2 cut(s) 64, 779
Alw26I GTCTC 2 cut(s) 53, 617
AlwI GGATC 3 cut(s) 110, 268, 1026
Ama87I CYCGRG 1 cut(s) 275
Aor13HI TCCGGA 1 cut(s) 370
ApeKI GCWGC 2 cut(s) 829, 917
ArsI GACNNNNNNTTYG 2 cut(s) 70, 102
Asp718I GGTACC 1 cut(s) 247
AspA2I CCTAGG 2 cut(s) 37, 944
AspLEI GCGC 2 cut(s) 44, 809
AspS9I GGNCC 3 cut(s) 884, 949, 1017
AvaI CYCGRG 1 cut(s) 275
AvaII GGWCC 3 cut(s) 884, 949, 1017
AvrII CCTAGG 2 cut(s) 37, 944
BaeI ACNNNNGTAYC 2 cut(s) 726, 759
BanI GGYRCC 2 cut(s) 247, 806
BbsI GAAGAC 1 cut(s) 348
Bbv12I GWGCWC 2 cut(s) 64, 779
BbvI GCAGC 2 cut(s) 841, 929
BccI CCATC 1 cut(s) 328
BciT130I CCWGG 1 cut(s) 57
BciVI GTATCC 1 cut(s) 12
BclI TGATCA 1 cut(s) 789
BcoDI GTCTC 2 cut(s) 53, 617
BfaI CTAG 5 cut(s) 38, 443, 543, 945, 953
BfmI CTRYAG 1 cut(s) 827
BfoI RGCGCY 1 cut(s) 810
BfuAI ACCTGC 1 cut(s) 20
BfuI GTATCC 1 cut(s) 12
BglII AGATCT 1 cut(s) 1047
BisI GCNGC 5 cut(s) 281, 639, 810, 830, 918
BlnI CCTAGG 2 cut(s) 37, 944
BlpI GCTNAGC 2 cut(s) 131, 821
BlsI GCNGC 5 cut(s) 282, 640, 811, 831, 919
Bme1390I CCNGG 1 cut(s) 57
Bme18I GGWCC 3 cut(s) 884, 949, 1017
BmeT110I CYCGRG 1 cut(s) 275
BmgBI CACGTC 2 cut(s) 202, 868
BmgT120I GGNCC 3 cut(s) 884, 949, 1017
BmiI GGNNCC 5 cut(s) 249, 673, 808, 950, 1019
BmrFI CCNGG 1 cut(s) 57
BmrI ACTGGG 1 cut(s) 1034
BmsI GCATC 3 cut(s) 550, 703, 983
BmuI ACTGGG 1 cut(s) 1034
BpiI GAAGAC 1 cut(s) 348
BpmI CTGGAG 3 cut(s) 78, 228, 496
Bpu1102I GCTNAGC 2 cut(s) 131, 821
BpuEI CTTGAG 1 cut(s) 468
BsaAI YACGTR 1 cut(s) 995
BsaHI GRCGYC 3 cut(s) 782, 807, 967
BsaJI CCNNGG 2 cut(s) 37, 944
BsaWI WCCGGW 1 cut(s) 370
BsaXI ACNNNNNCTCC 2 cut(s) 494, 524
Bsc4I CCNNNNNNNGG 2 cut(s) 257, 689
Bse118I RCCGGY 2 cut(s) 803, 960
Bse1I ACTGG 3 cut(s) 211, 429, 1040
BseAI TCCGGA 1 cut(s) 370
BseBI CCWGG 1 cut(s) 57
BseDI CCNNGG 2 cut(s) 37, 944
BseGI GGATG 2 cut(s) 425, 694
BseLI CCNNNNNNNGG 2 cut(s) 257, 689
BseMII CTCAG 6 cut(s) 285, 315, 321, 509, 753, 835
BseNI ACTGG 3 cut(s) 211, 429, 1040
BseXI GCAGC 2 cut(s) 841, 929
BsgI GTGCAG 1 cut(s) 630
Bsh1236I CGCG 1 cut(s) 939
Bsh1285I CGRYCG 1 cut(s) 924
BshNI GGYRCC 2 cut(s) 247, 806
BsiEI CGRYCG 1 cut(s) 924
BsiHKAI GWGCWC 2 cut(s) 64, 779
BsiHKCI CYCGRG 1 cut(s) 275
BsiSI CCGG 4 cut(s) 371, 804, 914, 961
BslFI GGGAC 1 cut(s) 664
BslI CCNNNNNNNGG 2 cut(s) 257, 689
BsmAI GTCTC 2 cut(s) 53, 617
BsmFI GGGAC 1 cut(s) 664
BsmI GAATGC 2 cut(s) 97, 148
BsoBI CYCGRG 1 cut(s) 275
Bsp1286I GDGCHC 2 cut(s) 64, 779
Bsp13I TCCGGA 1 cut(s) 370
Bsp143I GATC 7 cut(s) 115, 260, 724, 789, 921, 1031, 1047
Bsp1720I GCTNAGC 2 cut(s) 131, 821
BspACI CCGC 7 cut(s) 119, 280, 638, 810, 842, 1006, 1021
BspCNI CTCAG 6 cut(s) 286, 316, 320, 510, 752, 834
BspEI TCCGGA 1 cut(s) 370
BspFNI CGCG 1 cut(s) 939
BspLI GGNNCC 5 cut(s) 249, 673, 808, 950, 1019
BspMAI CTGCAG 1 cut(s) 831
BspMI ACCTGC 1 cut(s) 20
BspPI GGATC 3 cut(s) 110, 268, 1026
BspT107I GGYRCC 2 cut(s) 247, 806
BsrBI CCGCTC 2 cut(s) 280, 1023
BsrFI RCCGGY 2 cut(s) 803, 960
BsrI ACTGG 3 cut(s) 211, 429, 1040
BssAI RCCGGY 2 cut(s) 803, 960
BssECI CCNNGG 2 cut(s) 37, 944
BssMI GATC 7 cut(s) 115, 260, 724, 789, 921, 1031, 1047
BssNI GRCGYC 3 cut(s) 782, 807, 967
BssT1I CCWWGG 2 cut(s) 37, 944
Bst2UI CCWGG 1 cut(s) 57
Bst4CI ACNGT 1 cut(s) 628
Bst6I CTCTTC 1 cut(s) 615
BstACI GRCGYC 3 cut(s) 782, 807, 967
BstBAI YACGTR 1 cut(s) 995
BstC8I GCNNGC 2 cut(s) 230, 827
BstDEI CTNAG 7 cut(s) 131, 294, 307, 324, 518, 739, 821
BstF5I GGATG 2 cut(s) 425, 694
BstFNI CGCG 1 cut(s) 939
BstH2I RGCGCY 1 cut(s) 810
BstHHI GCGC 2 cut(s) 44, 809
BstKTI GATC 7 cut(s) 118, 263, 727, 792, 924, 1034, 1050
BstMAI GTCTC 2 cut(s) 53, 617
BstMBI GATC 7 cut(s) 115, 260, 724, 789, 921, 1031, 1047
BstMCI CGRYCG 1 cut(s) 924
BstMWI GCNNNNNNNGC 4 cut(s) 92, 127, 152, 826
BstNI CCWGG 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 55
BstSFI CTRYAG 1 cut(s) 827
BstUI CGCG 1 cut(s) 939
BstV1I GCAGC 2 cut(s) 841, 929
BstV2I GAAGAC 1 cut(s) 348
BstX2I RGATCY 2 cut(s) 1031, 1047
BstXI CCANNNNNNTGG 2 cut(s) 168, 236
BstYI RGATCY 2 cut(s) 1031, 1047
BsuI GTATCC 1 cut(s) 12
BtrI CACGTC 2 cut(s) 202, 868
BtsCI GGATG 2 cut(s) 425, 694
BtsIMutI CAGTG 3 cut(s) 204, 436, 779
BveI ACCTGC 1 cut(s) 20
Cac8I GCNNGC 2 cut(s) 230, 827
CfoI GCGC 2 cut(s) 44, 809
Cfr10I RCCGGY 2 cut(s) 803, 960
Cfr13I GGNCC 3 cut(s) 884, 949, 1017
CseI GACGC 2 cut(s) 790, 945
Csp6I GTAC 3 cut(s) 248, 743, 941
CviAII CATG 4 cut(s) 152, 162, 668, 704
CviQI GTAC 3 cut(s) 248, 743, 941
DdeI CTNAG 7 cut(s) 131, 294, 307, 324, 518, 739, 821
DinI GGCGCC 1 cut(s) 808
DpnI GATC 7 cut(s) 117, 262, 726, 791, 923, 1033, 1049
DpnII GATC 7 cut(s) 115, 260, 724, 789, 921, 1031, 1047
DrdI GACNNNNNNGTC 1 cut(s) 200
DseDI GACNNNNNNGTC 1 cut(s) 200
Eam1104I CTCTTC 1 cut(s) 615
EarI CTCTTC 1 cut(s) 615
Eco130I CCWWGG 2 cut(s) 37, 944
Eco47I GGWCC 3 cut(s) 884, 949, 1017
Eco57I CTGAAG 1 cut(s) 751
Eco88I CYCGRG 1 cut(s) 275
EcoO109I RGGNCCY 2 cut(s) 949, 1017
EcoRII CCWGG 1 cut(s) 55
EcoT14I CCWWGG 2 cut(s) 37, 944
EgeI GGCGCC 1 cut(s) 808
EheI GGCGCC 1 cut(s) 808
ErhI CCWWGG 2 cut(s) 37, 944
FaeI CATG 4 cut(s) 155, 165, 671, 707
FalI AAGNNNNNCTT 2 cut(s) 92, 124
FaqI GGGAC 1 cut(s) 664
FatI CATG 4 cut(s) 151, 161, 667, 703
FauI CCCGC 2 cut(s) 1013, 1028
FbaI TGATCA 1 cut(s) 789
FblI GTMKAC 1 cut(s) 718
Fnu4HI GCNGC 5 cut(s) 281, 639, 810, 830, 918
FokI GGATG 2 cut(s) 412, 681
Fsp4HI GCNGC 5 cut(s) 281, 639, 810, 830, 918
FspBI CTAG 5 cut(s) 38, 443, 543, 945, 953
GlaI GCGC 2 cut(s) 43, 808
GluI GCNGC 5 cut(s) 281, 639, 810, 830, 918
GsuI CTGGAG 3 cut(s) 78, 228, 496
HaeII RGCGCY 1 cut(s) 810
HapII CCGG 4 cut(s) 371, 804, 914, 961
HgaI GACGC 2 cut(s) 790, 945
HhaI GCGC 2 cut(s) 44, 809
Hin1I GRCGYC 3 cut(s) 782, 807, 967
Hin1II CATG 4 cut(s) 155, 165, 671, 707
Hin6I GCGC 2 cut(s) 42, 807
HinP1I GCGC 2 cut(s) 42, 807
HindIII AAGCTT 1 cut(s) 84
HinfI GANTC 3 cut(s) 367, 571, 730
HpaII CCGG 4 cut(s) 371, 804, 914, 961
Hpy166II GTNNAC 1 cut(s) 719
Hpy188I TCNGA 4 cut(s) 325, 729, 1031, 1036
Hpy8I GTNNAC 1 cut(s) 719
Hpy99I CGWCG 4 cut(s) 784, 939, 969, 972
HpyAV CCTTC 2 cut(s) 467, 823
HpyCH4III ACNGT 1 cut(s) 628
HpyCH4IV ACGT 4 cut(s) 201, 867, 967, 994
HpyCH4V TGCA 7 cut(s) 165, 186, 502, 563, 611, 658, 829
HpyF10VI GCNNNNNNNGC 4 cut(s) 92, 127, 152, 826
HpyF3I CTNAG 7 cut(s) 131, 294, 307, 324, 518, 739, 821
HpySE526I ACGT 4 cut(s) 201, 867, 967, 994
Hsp92I GRCGYC 3 cut(s) 782, 807, 967
Hsp92II CATG 4 cut(s) 155, 165, 671, 707
HspAI GCGC 2 cut(s) 42, 807
KasI GGCGCC 1 cut(s) 806
Kpn2I TCCGGA 1 cut(s) 370
KpnI GGTACC 1 cut(s) 251
Ksp22I TGATCA 1 cut(s) 789
Kzo9I GATC 7 cut(s) 115, 260, 724, 789, 921, 1031, 1047
LmnI GCTCC 2 cut(s) 59, 677
Lsp1109I GCAGC 2 cut(s) 841, 929
LweI GCATC 3 cut(s) 550, 703, 983
MaeI CTAG 5 cut(s) 38, 443, 543, 945, 953
MaeII ACGT 4 cut(s) 201, 867, 967, 994
MaeIII GTNAC 6 cut(s) 171, 202, 431, 663, 928, 995
MalI GATC 7 cut(s) 117, 262, 726, 791, 923, 1033, 1049
MbiI CCGCTC 2 cut(s) 280, 1023
MboI GATC 7 cut(s) 115, 260, 724, 789, 921, 1031, 1047
MboII GAAGA 5 cut(s) 281, 348, 632, 754, 757
MfeI CAATTG 1 cut(s) 362
MflI RGATCY 2 cut(s) 1031, 1047
MhlI GDGCHC 2 cut(s) 64, 779
MluCI AATT 7 cut(s) 219, 315, 362, 468, 477, 525, 642
MluI ACGCGT 1 cut(s) 937
Mly113I GGCGCC 1 cut(s) 807
MnlI CCTC 6 cut(s) 78, 96, 343, 693, 748, 875
MroI TCCGGA 1 cut(s) 370
MseI TTAA 5 cut(s) 32, 99, 110, 218, 222
MslI CAYNNNNRTG 1 cut(s) 209
MspA1I CMGCKG 1 cut(s) 844
MspI CCGG 4 cut(s) 371, 804, 914, 961
MspR9I CCNGG 1 cut(s) 57
MunI CAATTG 1 cut(s) 362
Mva1269I GAATGC 2 cut(s) 97, 148
MvaI CCWGG 1 cut(s) 57
MvnI CGCG 1 cut(s) 939
MwoI GCNNNNNNNGC 4 cut(s) 92, 127, 152, 826
NarI GGCGCC 1 cut(s) 807
NdeII GATC 7 cut(s) 115, 260, 724, 789, 921, 1031, 1047
NlaIII CATG 4 cut(s) 155, 165, 671, 707
NlaIV GGNNCC 5 cut(s) 249, 673, 808, 950, 1019
NmuCI GTSAC 4 cut(s) 171, 202, 431, 995
OliI CACNNNNGTG 1 cut(s) 209
PacI TTAATTAA 1 cut(s) 222
PaeR7I CTCGAG 1 cut(s) 275
PctI GAATGC 2 cut(s) 97, 148
PfeI GAWTC 3 cut(s) 367, 571, 730
PfoI TCCNGGA 1 cut(s) 55
PkrI GCNGC 5 cut(s) 282, 640, 811, 831, 919
Ple19I CGATCG 1 cut(s) 924
PluTI GGCGCC 1 cut(s) 810
Ppu21I YACGTR 1 cut(s) 995
PpuMI RGGWCCY 2 cut(s) 949, 1017
Psp5II RGGWCCY 2 cut(s) 949, 1017
Psp6I CCWGG 1 cut(s) 55
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 5 cut(s) 249, 673, 808, 950, 1019
PspPI GGNCC 3 cut(s) 884, 949, 1017
PspPPI RGGWCCY 2 cut(s) 949, 1017
PstI CTGCAG 1 cut(s) 831
PsuI RGATCY 2 cut(s) 1031, 1047
PvuI CGATCG 1 cut(s) 924
RsaI GTAC 3 cut(s) 249, 744, 942
RsaNI GTAC 3 cut(s) 248, 743, 941
RseI CAYNNNNRTG 1 cut(s) 209
SaqAI TTAA 5 cut(s) 32, 99, 110, 218, 222
SatI GCNGC 5 cut(s) 281, 639, 810, 830, 918
Sau3AI GATC 7 cut(s) 115, 260, 724, 789, 921, 1031, 1047
Sau96I GGNCC 3 cut(s) 884, 949, 1017
ScrFI CCNGG 1 cut(s) 57
SduI GDGCHC 2 cut(s) 64, 779
SfaNI GCATC 3 cut(s) 550, 703, 983
SfcI CTRYAG 1 cut(s) 827
SfoI GGCGCC 1 cut(s) 808
Sfr274I CTCGAG 1 cut(s) 275
SgrAI CRCCGGYG 1 cut(s) 960
SinI GGWCC 3 cut(s) 884, 949, 1017
SlaI CTCGAG 1 cut(s) 275
SmiMI CAYNNNNRTG 1 cut(s) 209
SmlI CTYRAG 2 cut(s) 275, 483
SmoI CTYRAG 2 cut(s) 275, 483
Sse9I AATT 7 cut(s) 219, 315, 362, 468, 477, 525, 642
SsiI CCGC 7 cut(s) 119, 280, 638, 810, 842, 1006, 1021
SspDI GGCGCC 1 cut(s) 806
SspMI CTAG 5 cut(s) 38, 443, 543, 945, 953
StyD4I CCNGG 1 cut(s) 55
StyI CCWWGG 2 cut(s) 37, 944
TaaI ACNGT 1 cut(s) 628
TaiI ACGT 4 cut(s) 204, 870, 970, 997
TaqI TCGA 4 cut(s) 276, 779, 924, 970
TasI AATT 7 cut(s) 219, 315, 362, 468, 477, 525, 642
TauI GCSGC 3 cut(s) 283, 641, 812
TfiI GAWTC 3 cut(s) 367, 571, 730
Tru1I TTAA 5 cut(s) 32, 99, 110, 218, 222
Tru9I TTAA 5 cut(s) 32, 99, 110, 218, 222
TscAI CASTG 3 cut(s) 211, 436, 779
TseFI GTSAC 4 cut(s) 171, 202, 431, 995
TseI GCWGC 2 cut(s) 829, 917
Tsp45I GTSAC 4 cut(s) 171, 202, 431, 995
TspDTI ATGAA 6 cut(s) 414, 518, 584, 633, 720, 1000
TspRI CASTG 3 cut(s) 211, 436, 779
VpaK11BI GGWCC 3 cut(s) 884, 949, 1017
XhoI CTCGAG 1 cut(s) 275
XmaJI CCTAGG 2 cut(s) 37, 944
XmiI GTMKAC 1 cut(s) 718
XspI CTAG 5 cut(s) 38, 443, 543, 945, 953
ZraI GACGTC 1 cut(s) 968
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.