Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001737

Physical Location & Seq

Genomic Coordinates Reverse (-)

19221149 .. 19226124

Gene Structure 4976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG174000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGATTCGGTGGCCCCAGTCATGTGACACCCAGCTTTCTGGACATCTGGTACCTGAACTTGGATCGCTTTCGGCTCTCGAGCGGCTGATTCTTCCTCAGAATGACATCTCAGGAACAATTCCATCTGAGCTTGGTAACCTGAAGACACTCCAGACTCTCATATTAGGTTATAATAGATTATCGGGCAGCATTCCTCCTACACTGGGTAATTTGCAATCACTTCGTACCTTGGGTCTCGATCATAACGAATTGAGTGGGAAAATCCCTTCCGGAATTGCAACCATTAAAAGCCTCCAAATTGCGTCTTTTATCGACAACAAAAGTTTATGTTGGGAGTTTTCGCCGACACCAATATATAAAGACAGTTACCCATTATGCCAGAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8

Protein Analysis

129

Amino Acids

14.12

Weight (kDa)

7.72

Isoelectric Point (pI)

52.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	7 - 106	1.8e-10	Leucine-rich repeat region
LRR_8	PF13855	25 - 84	4.1e-08	Leucine rich repeat
LRR_4	PF12799	49 - 85	3.6e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43740 AT3G43740 AT5G21090
fragaria_vesca	FvH4_3g14800 FvH4_3g14810 FvH4_3g14820 FvH4_3g17980 FvH4_3g18020 FvH4_3g18100 FvH4_3g27550
malus_domestica	MD11G1182200.v1.1
prunus_persica	Prupe.6G154900_v2.0.a1
pyrus_communis	pycom11g15710
rosa_chinensis	RchiOBHm_Chr4g0425121 RchiOBHm_Chr5g0024351 RchiOBHm_Chr5g0030061 RchiOBHm_Chr5g0049921
rosa_laevigata	RLG00000001776 RLG00000007397 RLG00000007401 RLG00000032794 RLG00000033241 RLG00000034665
rosa_multiflora	Rmu_co8267339.1_g000001 Rmu_co8518351.1_g000002 Rmu_sc0000333.1_g000069 Rmu_sc0003368.1_g000001 Rmu_ssc0000420.1_g000033
rosa_roxburghii	Rroxscaffold_1G00031390 Rroxscaffold_1G00054880 Rroxscaffold_1G00055800 Rroxscaffold_5G00367190
rosa_rugosa	Rorug04G0201800 Rorug05G0254200
rosa_samantha	Rh3CG306200 Rh4BG264000 Rh4CG275100 Rh4DG260100 Rh5AG174000 Rh5AG328600 Rh5BG170800 Rh5BG208600 Rh5DG213000 Rh7DG379000
rosa_wichuraiana	Rw4G022350 Rw5G015690 Rw5G019100 Rw5G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	171
Acc65I	GGTACC	1 cut(s)	49
AccB1I	GGYRCC	1 cut(s)	49
AccBSI	CCGCTC	1 cut(s)	82
AccIII	TCCGGA	1 cut(s)	269
AciI	CCGC	1 cut(s)	82
AclWI	GGATC	1 cut(s)	70
AcuI	CTGAAG	1 cut(s)	161
AfaI	GTAC	2 cut(s)	51, 226
AfiI	CCNNNNNNNGG	2 cut(s)	59, 203
AluBI	AGCT	2 cut(s)	34, 130
AluI	AGCT	2 cut(s)	34, 130
Alw26I	GTCTC	1 cut(s)	239
AlwI	GGATC	1 cut(s)	70
Ama87I	CYCGRG	1 cut(s)	77
Aor13HI	TCCGGA	1 cut(s)	269
AoxI	GGCC	1 cut(s)	11
ApeKI	GCWGC	1 cut(s)	186
Asp718I	GGTACC	1 cut(s)	49
AspS9I	GGNCC	1 cut(s)	12
AvaI	CYCGRG	1 cut(s)	77
BanI	GGYRCC	1 cut(s)	49
BbsI	GAAGAC	1 cut(s)	149
BbvI	GCAGC	1 cut(s)	198
BccI	CCATC	1 cut(s)	130
BcgI	CGANNNNNNTGC	2 cut(s)	203, 237
BcoDI	GTCTC	1 cut(s)	239
BisI	GCNGC	2 cut(s)	83, 187
BlsI	GCNGC	2 cut(s)	84, 188
BmeT110I	CYCGRG	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	12
BmiI	GGNNCC	2 cut(s)	14, 51
BmrI	ACTGGG	2 cut(s)	10, 212
BmuI	ACTGGG	2 cut(s)	10, 212
BpiI	GAAGAC	1 cut(s)	149
BpmI	CTGGAG	1 cut(s)	134
BsaI	GGTCTC	1 cut(s)	239
BsaJI	CCNNGG	1 cut(s)	228
BsaWI	WCCGGW	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 203
Bse1I	ACTGG	2 cut(s)	16, 207
BseAI	TCCGGA	1 cut(s)	269
BseDI	CCNNGG	1 cut(s)	228
BseLI	CCNNNNNNNGG	2 cut(s)	59, 203
BseMII	CTCAG	3 cut(s)	110, 117, 123
BseNI	ACTGG	2 cut(s)	16, 207
BseXI	GCAGC	1 cut(s)	198
BseYI	CCCAGC	1 cut(s)	30
BshFI	GGCC	1 cut(s)	13
BshNI	GGYRCC	1 cut(s)	49
BsiHKCI	CYCGRG	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	270
BslI	CCNNNNNNNGG	2 cut(s)	59, 203
BsmAI	GTCTC	1 cut(s)	239
BsmI	GAATGC	1 cut(s)	189
BsnI	GGCC	1 cut(s)	13
Bso31I	GGTCTC	1 cut(s)	239
BsoBI	CYCGRG	1 cut(s)	77
Bsp13I	TCCGGA	1 cut(s)	269
Bsp143I	GATC	2 cut(s)	62, 238
BspACI	CCGC	1 cut(s)	82
BspANI	GGCC	1 cut(s)	13
BspCNI	CTCAG	3 cut(s)	109, 118, 122
BspEI	TCCGGA	1 cut(s)	269
BspLI	GGNNCC	2 cut(s)	14, 51
BspPI	GGATC	1 cut(s)	70
BspT107I	GGYRCC	1 cut(s)	49
BspTNI	GGTCTC	1 cut(s)	239
BsrBI	CCGCTC	1 cut(s)	82
BsrI	ACTGG	2 cut(s)	16, 207
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	2 cut(s)	62, 238
BssT1I	CCWWGG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	365
BstDEI	CTNAG	3 cut(s)	96, 109, 126
BstEII	GGTNACC	1 cut(s)	134
BstKTI	GATC	2 cut(s)	65, 241
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	2 cut(s)	62, 238
BstPI	GGTNACC	1 cut(s)	134
BstV1I	GCAGC	1 cut(s)	198
BstV2I	GAAGAC	1 cut(s)	149
BstXI	CCANNNNNNTGG	1 cut(s)	38
BsuRI	GGCC	1 cut(s)	13
BtsIMutI	CAGTG	1 cut(s)	200
Cfr13I	GGNCC	1 cut(s)	12
CseI	GACGC	1 cut(s)	291
Csp6I	GTAC	2 cut(s)	50, 225
CviAII	CATG	1 cut(s)	21
CviJI	RGCY	6 cut(s)	13, 34, 74, 85, 130, 291
CviKI_1	RGCY	6 cut(s)	13, 34, 74, 85, 130, 291
CviQI	GTAC	2 cut(s)	50, 225
DdeI	CTNAG	3 cut(s)	96, 109, 126
DpnI	GATC	2 cut(s)	64, 240
DpnII	GATC	2 cut(s)	62, 238
Eco130I	CCWWGG	1 cut(s)	228
Eco31I	GGTCTC	1 cut(s)	239
Eco57I	CTGAAG	1 cut(s)	161
Eco88I	CYCGRG	1 cut(s)	77
Eco91I	GGTNACC	1 cut(s)	134
EcoO65I	GGTNACC	1 cut(s)	134
EcoT14I	CCWWGG	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	1 cut(s)	24
FaiI	YATR	8 cut(s)	22, 161, 171, 243, 328, 355, 357, 376
FatI	CATG	1 cut(s)	20
Fnu4HI	GCNGC	2 cut(s)	83, 187
Fsp4HI	GCNGC	2 cut(s)	83, 187
GluI	GCNGC	2 cut(s)	83, 187
GsaI	CCCAGC	1 cut(s)	34
GsuI	CTGGAG	1 cut(s)	134
HaeIII	GGCC	1 cut(s)	13
HapII	CCGG	1 cut(s)	270
HgaI	GACGC	1 cut(s)	291
Hin1II	CATG	1 cut(s)	24
HinfI	GANTC	3 cut(s)	4, 88, 154
HpaII	CCGG	1 cut(s)	270
Hpy188I	TCNGA	2 cut(s)	99, 127
Hpy188III	TCNNGA	6 cut(s)	39, 77, 111, 151, 236, 270
HpyAV	CCTTC	1 cut(s)	276
HpyCH4III	ACNGT	1 cut(s)	365
HpyCH4V	TGCA	2 cut(s)	214, 278
HpyF3I	CTNAG	3 cut(s)	96, 109, 126
Hsp92II	CATG	1 cut(s)	24
Kpn2I	TCCGGA	1 cut(s)	269
KpnI	GGTACC	1 cut(s)	53
Kzo9I	GATC	2 cut(s)	62, 238
Lsp1109I	GCAGC	1 cut(s)	198
MaeIII	GTNAC	3 cut(s)	23, 134, 365
MalI	GATC	2 cut(s)	64, 240
MbiI	CCGCTC	1 cut(s)	82
MboI	GATC	2 cut(s)	62, 238
MboII	GAAGA	2 cut(s)	83, 154
MluCI	AATT	5 cut(s)	117, 208, 248, 273, 297
MlyI	GAGTC	1 cut(s)	148
MnlI	CCTC	3 cut(s)	105, 204, 302
MroI	TCCGGA	1 cut(s)	269
MseI	TTAA	1 cut(s)	285
MspI	CCGG	1 cut(s)	270
Mva1269I	GAATGC	1 cut(s)	189
NdeII	GATC	2 cut(s)	62, 238
NlaIII	CATG	1 cut(s)	24
NlaIV	GGNNCC	2 cut(s)	14, 51
NmuCI	GTSAC	1 cut(s)	23
PaeR7I	CTCGAG	1 cut(s)	77
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PctI	GAATGC	1 cut(s)	189
PfeI	GAWTC	2 cut(s)	4, 88
PkrI	GCNGC	2 cut(s)	84, 188
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
PsiI	TTATAA	1 cut(s)	171
PspEI	GGTNACC	1 cut(s)	134
PspFI	CCCAGC	1 cut(s)	30
PspN4I	GGNNCC	2 cut(s)	14, 51
PspPI	GGNCC	1 cut(s)	12
RsaI	GTAC	2 cut(s)	51, 226
RsaNI	GTAC	2 cut(s)	50, 225
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	2 cut(s)	83, 187
Sau3AI	GATC	2 cut(s)	62, 238
Sau96I	GGNCC	1 cut(s)	12
SchI	GAGTC	1 cut(s)	148
SetI	ASST	6 cut(s)	36, 55, 132, 141, 169, 230
Sfr274I	CTCGAG	1 cut(s)	77
SlaI	CTCGAG	1 cut(s)	77
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	5 cut(s)	117, 208, 248, 273, 297
SsiI	CCGC	1 cut(s)	82
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	365
TaqI	TCGA	3 cut(s)	78, 237, 312
TasI	AATT	5 cut(s)	117, 208, 248, 273, 297
TauI	GCSGC	1 cut(s)	85
TfiI	GAWTC	2 cut(s)	4, 88
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	1 cut(s)	207
TseFI	GTSAC	1 cut(s)	23
TseI	GCWGC	1 cut(s)	186
Tsp45I	GTSAC	1 cut(s)	23
TspRI	CASTG	1 cut(s)	207
XhoI	CTCGAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.