Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000333.1

Orthogroup ID

OG0001737

Physical Location & Seq

Genomic Coordinates Reverse (-)

456592 .. 458900

Gene Structure 2309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000333.1_g000069.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atggcgatggcggcgaggttttggttgttgagcctaaccctaagtgtaagcgtggttgggttggtgcgcggtaactcggaatcggacgctttgtacacgctgaggaagagcttatcggatcccgataacgtgctgcagagctgggatcccacgctcgtcaacccctgcacttggtgtgattttgatattttgggcagggatttaggtaattcaaacctctctggacatctggtacctgaacttggaaaacttgagcatcttcaatatctggagctatacagaaataatattcagggaactattccagctgagcttggtaacctgaagagcctcgttagcttggatttgtataacaacaacatatcagggacaattcctccttcattggcgaaattgaaatcacttgtgttcttacgtctcaatgacaacaggttaagtgggccaatccccagggatctcgttggtcttgcaagcctcaaagttgtggatgtatcgagcaatgatttgtgcggaacaattcctaccagtggaccatttgagcacattcctttgagcaagtacgttctttctgttgtttgccatgttgctcctttatctaagtttacctcactatttgataaagaatggcttctcccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8

Protein Analysis

212

Amino Acids

23.26

Weight (kDa)

5.77

Isoelectric Point (pI)

28.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43740 AT3G43740 AT5G21090
fragaria_vesca	FvH4_3g14800 FvH4_3g14810 FvH4_3g14820 FvH4_3g17980 FvH4_3g18020 FvH4_3g18100 FvH4_3g27550
malus_domestica	MD11G1182200.v1.1
prunus_persica	Prupe.6G154900_v2.0.a1
pyrus_communis	pycom11g15710
rosa_chinensis	RchiOBHm_Chr4g0425121 RchiOBHm_Chr5g0024351 RchiOBHm_Chr5g0030061 RchiOBHm_Chr5g0049921
rosa_laevigata	RLG00000001776 RLG00000007397 RLG00000007401 RLG00000032794 RLG00000033241 RLG00000034665
rosa_multiflora	Rmu_co8267339.1_g000001 Rmu_co8518351.1_g000002 Rmu_sc0000333.1_g000069 Rmu_sc0003368.1_g000001 Rmu_ssc0000420.1_g000033
rosa_roxburghii	Rroxscaffold_1G00031390 Rroxscaffold_1G00054880 Rroxscaffold_1G00055800 Rroxscaffold_5G00367190
rosa_rugosa	Rorug04G0201800 Rorug05G0254200
rosa_samantha	Rh3CG306200 Rh4BG264000 Rh4CG275100 Rh4DG260100 Rh5AG174000 Rh5AG328600 Rh5BG170800 Rh5BG208600 Rh5DG213000 Rh7DG379000
rosa_wichuraiana	Rw4G022350 Rw5G015690 Rw5G019100 Rw5G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	232
AccB1I	GGYRCC	1 cut(s)	232
AccII	CGCG	1 cut(s)	69
AciI	CCGC	3 cut(s)	11, 69, 510
AclWI	GGATC	5 cut(s)	113, 126, 140, 153, 462
AcuI	CTGAAG	1 cut(s)	344
AdeI	CACNNNGTG	1 cut(s)	174
AfaI	GTAC	3 cut(s)	95, 234, 560
AfiI	CCNNNNNNNGG	3 cut(s)	171, 242, 527
AgsI	TTSAA	3 cut(s)	213, 263, 397
AjnI	CCWGG	1 cut(s)	449
AluBI	AGCT	6 cut(s)	111, 141, 274, 308, 313, 339
AluI	AGCT	6 cut(s)	111, 141, 274, 308, 313, 339
Alw21I	GWGCWC	1 cut(s)	543
Alw26I	GTCTC	1 cut(s)	422
AlwI	GGATC	5 cut(s)	113, 126, 140, 153, 462
AoxI	GGCC	1 cut(s)	440
ApeKI	GCWGC	1 cut(s)	133
Asp700I	GAANNNNTTC	1 cut(s)	627
Asp718I	GGTACC	1 cut(s)	232
AspLEI	GCGC	1 cut(s)	69
AspS9I	GGNCC	2 cut(s)	440, 530
AvaII	GGWCC	1 cut(s)	530
BamHI	GGATCC	2 cut(s)	118, 145
BanI	GGYRCC	1 cut(s)	232
Bbv12I	GWGCWC	1 cut(s)	543
BbvCI	CCTCAGC	1 cut(s)	101
BbvI	GCAGC	1 cut(s)	120
BciT130I	CCWGG	1 cut(s)	451
BcoDI	GTCTC	1 cut(s)	422
BfmI	CTRYAG	1 cut(s)	134
BisI	GCNGC	2 cut(s)	12, 134
BlpI	GCTNAGC	1 cut(s)	309
BlsI	GCNGC	2 cut(s)	13, 135
Bme1390I	CCNGG	1 cut(s)	451
Bme18I	GGWCC	1 cut(s)	530
BmgT120I	GGNCC	2 cut(s)	440, 530
BmiI	GGNNCC	3 cut(s)	120, 147, 234
BmrFI	CCNGG	1 cut(s)	451
BmsI	GCATC	1 cut(s)	265
BpmI	CTGGAG	1 cut(s)	290
Bpu10I	CCTNAGC	1 cut(s)	101
Bpu1102I	GCTNAGC	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	272
BsaJI	CCNNGG	2 cut(s)	449, 450
BsaXI	ACNNNNNCTCC	2 cut(s)	361, 391
Bsc4I	CCNNNNNNNGG	3 cut(s)	171, 242, 527
Bse1I	ACTGG	1 cut(s)	525
Bse3DI	GCAATG	1 cut(s)	505
BseBI	CCWGG	1 cut(s)	451
BseDI	CCNNGG	2 cut(s)	449, 450
BseGI	GGATG	1 cut(s)	493
BseLI	CCNNNNNNNGG	3 cut(s)	171, 242, 527
BseMI	GCAATG	1 cut(s)	505
BseMII	CTCAG	2 cut(s)	92, 300
BseNI	ACTGG	1 cut(s)	525
BseXI	GCAGC	1 cut(s)	120
BseYI	CCCAGC	1 cut(s)	141
BsgI	GTGCAG	1 cut(s)	151
Bsh1236I	CGCG	1 cut(s)	69
BshFI	GGCC	1 cut(s)	442
BshNI	GGYRCC	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	543
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	3 cut(s)	171, 242, 527
BsmAI	GTCTC	1 cut(s)	422
BsmBI	CGTCTC	1 cut(s)	422
BsmFI	GGGAC	1 cut(s)	382
BsnI	GGCC	1 cut(s)	442
Bsp1286I	GDGCHC	1 cut(s)	543
Bsp1407I	TGTACA	1 cut(s)	93
Bsp143I	GATC	3 cut(s)	118, 145, 454
Bsp1720I	GCTNAGC	1 cut(s)	309
BspACI	CCGC	3 cut(s)	11, 69, 510
BspANI	GGCC	1 cut(s)	442
BspCNI	CTCAG	2 cut(s)	93, 301
BspFNI	CGCG	1 cut(s)	69
BspLI	GGNNCC	3 cut(s)	120, 147, 234
BspMAI	CTGCAG	1 cut(s)	138
BspPI	GGATC	5 cut(s)	113, 126, 140, 153, 462
BspQI	GCTCTTC	2 cut(s)	101, 320
BspT107I	GGYRCC	1 cut(s)	232
BsrDI	GCAATG	1 cut(s)	505
BsrGI	TGTACA	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	525
BssECI	CCNNGG	2 cut(s)	449, 450
BssMI	GATC	3 cut(s)	118, 145, 454
Bst2UI	CCWGG	1 cut(s)	451
Bst6I	CTCTTC	2 cut(s)	101, 320
BstAUI	TGTACA	1 cut(s)	93
BstC8I	GCNNGC	1 cut(s)	472
BstDEI	CTNAG	4 cut(s)	41, 101, 309, 597
BstEII	GGTNACC	1 cut(s)	317
BstF5I	GGATG	1 cut(s)	493
BstFNI	CGCG	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	3 cut(s)	121, 148, 457
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	3 cut(s)	118, 145, 454
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 336
BstNI	CCWGG	1 cut(s)	451
BstPI	GGTNACC	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	449
BstSFI	CTRYAG	1 cut(s)	134
BstUI	CGCG	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	120
BstX2I	RGATCY	3 cut(s)	118, 145, 454
BstYI	RGATCY	3 cut(s)	118, 145, 454
BsuRI	GGCC	1 cut(s)	442
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	493
BtsIMutI	CAGTG	1 cut(s)	532
Cac8I	GCNNGC	1 cut(s)	472
CfoI	GCGC	1 cut(s)	69
Cfr13I	GGNCC	2 cut(s)	440, 530
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	3 cut(s)	94, 233, 559
CviAII	CATG	1 cut(s)	581
CviQI	GTAC	3 cut(s)	94, 233, 559
DdeI	CTNAG	4 cut(s)	41, 101, 309, 597
DpnI	GATC	3 cut(s)	120, 147, 456
DpnII	GATC	3 cut(s)	118, 145, 454
DraIII	CACNNNGTG	1 cut(s)	174
Eam1104I	CTCTTC	2 cut(s)	101, 320
EarI	CTCTTC	2 cut(s)	101, 320
Eco47I	GGWCC	1 cut(s)	530
Eco57I	CTGAAG	1 cut(s)	344
Eco91I	GGTNACC	1 cut(s)	317
EcoO65I	GGTNACC	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	449
Esp3I	CGTCTC	1 cut(s)	422
FaeI	CATG	1 cut(s)	584
FaiI	YATR	5 cut(s)	277, 351, 362, 582, 637
FalI	AAGNNNNNCTT	1 cut(s)	612
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	1 cut(s)	580
Fnu4HI	GCNGC	2 cut(s)	12, 134
FokI	GGATG	1 cut(s)	500
Fsp4HI	GCNGC	2 cut(s)	12, 134
GlaI	GCGC	1 cut(s)	68
GluI	GCNGC	2 cut(s)	12, 134
GsaI	CCCAGC	1 cut(s)	145
GsuI	CTGGAG	1 cut(s)	290
HaeIII	GGCC	1 cut(s)	442
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	1 cut(s)	69
Hin1II	CATG	1 cut(s)	584
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	1 cut(s)	80
Hpy166II	GTNNAC	4 cut(s)	96, 160, 530, 603
Hpy188I	TCNGA	3 cut(s)	79, 85, 118
Hpy188III	TCNNGA	3 cut(s)	122, 222, 269
Hpy8I	GTNNAC	4 cut(s)	96, 160, 530, 603
HpyAV	CCTTC	1 cut(s)	390
HpyCH4IV	ACGT	3 cut(s)	129, 415, 561
HpyCH4V	TGCA	3 cut(s)	136, 168, 470
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 336
HpyF3I	CTNAG	4 cut(s)	41, 101, 309, 597
HpySE526I	ACGT	3 cut(s)	129, 415, 561
Hsp92II	CATG	1 cut(s)	584
HspAI	GCGC	1 cut(s)	67
KpnI	GGTACC	1 cut(s)	236
Kzo9I	GATC	3 cut(s)	118, 145, 454
LguI	GCTCTTC	2 cut(s)	101, 320
LmnI	GCTCC	2 cut(s)	271, 592
Lsp1109I	GCAGC	1 cut(s)	120
LweI	GCATC	1 cut(s)	265
MaeII	ACGT	3 cut(s)	129, 415, 561
MaeIII	GTNAC	2 cut(s)	71, 317
MalI	GATC	3 cut(s)	120, 147, 456
MboI	GATC	3 cut(s)	118, 145, 454
MboII	GAAGA	3 cut(s)	118, 251, 337
MflI	RGATCY	3 cut(s)	118, 145, 454
MhlI	GDGCHC	1 cut(s)	543
MluCI	AATT	4 cut(s)	208, 372, 392, 516
MnlI	CCTC	7 cut(s)	9, 96, 227, 341, 387, 485, 616
MroXI	GAANNNNTTC	1 cut(s)	627
MseI	TTAA	1 cut(s)	434
MspA1I	CMGCKG	1 cut(s)	308
MspR9I	CCNGG	1 cut(s)	451
MvaI	CCWGG	1 cut(s)	451
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	2 cut(s)	11, 336
NdeII	GATC	3 cut(s)	118, 145, 454
NlaIII	CATG	1 cut(s)	584
NlaIV	GGNNCC	3 cut(s)	120, 147, 234
PasI	CCCWGGG	1 cut(s)	450
PciSI	GCTCTTC	2 cut(s)	101, 320
PdmI	GAANNNNTTC	1 cut(s)	627
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	2 cut(s)	13, 135
Psp6I	CCWGG	1 cut(s)	449
PspEI	GGTNACC	1 cut(s)	317
PspFI	CCCAGC	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	449
PspN4I	GGNNCC	3 cut(s)	120, 147, 234
PspPI	GGNCC	2 cut(s)	440, 530
PsrI	GAACNNNNNNTAC	2 cut(s)	505, 537
PstI	CTGCAG	1 cut(s)	138
PsuI	RGATCY	3 cut(s)	118, 145, 454
PvuII	CAGCTG	1 cut(s)	308
RsaI	GTAC	3 cut(s)	95, 234, 560
RsaNI	GTAC	3 cut(s)	94, 233, 559
SapI	GCTCTTC	2 cut(s)	101, 320
SaqAI	TTAA	1 cut(s)	434
SatI	GCNGC	2 cut(s)	12, 134
Sau3AI	GATC	3 cut(s)	118, 145, 454
Sau96I	GGNCC	2 cut(s)	440, 530
ScrFI	CCNGG	1 cut(s)	451
SduI	GDGCHC	1 cut(s)	543
SfaNI	GCATC	1 cut(s)	265
SfcI	CTRYAG	1 cut(s)	134
SinI	GGWCC	1 cut(s)	530
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	4 cut(s)	208, 372, 392, 516
SsiI	CCGC	3 cut(s)	11, 69, 510
SspI	AATATT	1 cut(s)	289
StyD4I	CCNGG	1 cut(s)	449
TaiI	ACGT	3 cut(s)	132, 418, 564
TaqI	TCGA	1 cut(s)	494
TasI	AATT	4 cut(s)	208, 372, 392, 516
TatI	WGTACW	1 cut(s)	93
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	434
Tru9I	TTAA	1 cut(s)	434
TscAI	CASTG	1 cut(s)	532
TseI	GCWGC	1 cut(s)	133
TspDTI	ATGAA	1 cut(s)	372
TspRI	CASTG	1 cut(s)	532
VpaK11BI	GGWCC	1 cut(s)	530
XmnI	GAANNNNTTC	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.