Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001737

Physical Location & Seq

Genomic Coordinates Forward (+)

47511651 .. 47514959

Gene Structure 3309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034665

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCGGCGAGGTTTTGGTTGTTGAGCCTAACCCTAGGTGTAAGCGTGGTTGGGTTGGTGTCCGGTAACTCGGAATCTGACGCTTTGTACACGCTGAGGAAGAGCTTATCGGATCCCGATAACGTGCTGCAGAGCTGGGATCCCACGCTTGTCAACCCCTGCACTTGGTTCCACATCACCTGCAACCAGGACAATCGCGTTACCCGACTGGATTTAGGTAATTCAAACCTCTCTGGACATCTGGTACCTGAACTTGGAAAACTTGAGCATCTTCAATATCTGGAGCTTTACAGAAATAATATTCAGGGAACTATTCCACCTGAGCTTGGTAACCTGAAGAGCCTCGTTAGCTTGGACTTATATAACAACAACATATCAGGGACAATTCCTCCTTCGTTGGGGAAATTGAAATCACTTGTGTTCTTACGTCTCAATGAAAACAGATTAAGTGGGCCAATTCCCAGGGATCTCGTTGGTCTTGCAAGCCTCAAAGTTGTGGATGTATCGAGCAATGATTTGTGTGGAACAATTCCTACCAGTGGGCCATTTGAGCACATTCCTCTGAGCAACTTTGAGAACAACCATCGACTTGAAGGTCCGGAGTTGTTGGGGCTTGCAAGCTATGACACCAACTGCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8

Protein Analysis

214

Amino Acids

23.33

Weight (kDa)

5.29

Isoelectric Point (pI)

25.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	23 - 62	1.6e-11	Leucine rich repeat N-terminal domain
LRR_8	PF13855	66 - 125	2.5e-06	Leucine rich repeat
LRR_14	PF23598	70 - 168	9.4e-15	Leucine-rich repeat region
LRR_4	PF12799	90 - 130	8.8e-07	Leucine Rich repeats (2 copies)
LRR_4	PF12799	113 - 149	1e-05	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43740 AT3G43740 AT5G21090
fragaria_vesca	FvH4_3g14800 FvH4_3g14810 FvH4_3g14820 FvH4_3g17980 FvH4_3g18020 FvH4_3g18100 FvH4_3g27550
malus_domestica	MD11G1182200.v1.1
prunus_persica	Prupe.6G154900_v2.0.a1
pyrus_communis	pycom11g15710
rosa_chinensis	RchiOBHm_Chr4g0425121 RchiOBHm_Chr5g0024351 RchiOBHm_Chr5g0030061 RchiOBHm_Chr5g0049921
rosa_laevigata	RLG00000001776 RLG00000007397 RLG00000007401 RLG00000032794 RLG00000033241 RLG00000034665
rosa_multiflora	Rmu_co8267339.1_g000001 Rmu_co8518351.1_g000002 Rmu_sc0000333.1_g000069 Rmu_sc0003368.1_g000001 Rmu_ssc0000420.1_g000033
rosa_roxburghii	Rroxscaffold_1G00031390 Rroxscaffold_1G00054880 Rroxscaffold_1G00055800 Rroxscaffold_5G00367190
rosa_rugosa	Rorug04G0201800 Rorug05G0254200
rosa_samantha	Rh3CG306200 Rh4BG264000 Rh4CG275100 Rh4DG260100 Rh5AG174000 Rh5AG328600 Rh5BG170800 Rh5BG208600 Rh5DG213000 Rh7DG379000
rosa_wichuraiana	Rw4G022350 Rw5G015690 Rw5G019100 Rw5G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	188
AasI	GACNNNNNNGTC	1 cut(s)	594
Acc36I	ACCTGC	1 cut(s)	188
Acc65I	GGTACC	1 cut(s)	244
AccB1I	GGYRCC	1 cut(s)	244
AccII	CGCG	1 cut(s)	198
AccIII	TCCGGA	1 cut(s)	598
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	5 cut(s)	107, 120, 134, 147, 474
AcuI	CTGAAG	1 cut(s)	356
AfaI	GTAC	2 cut(s)	89, 246
AfiI	CCNNNNNNNGG	5 cut(s)	165, 254, 326, 398, 539
AgsI	TTSAA	4 cut(s)	225, 275, 409, 593
AjnI	CCWGG	2 cut(s)	186, 461
AluBI	AGCT	6 cut(s)	105, 135, 286, 325, 351, 621
AluI	AGCT	6 cut(s)	105, 135, 286, 325, 351, 621
Alw21I	GWGCWC	1 cut(s)	555
Alw26I	GTCTC	1 cut(s)	434
AlwI	GGATC	5 cut(s)	107, 120, 134, 147, 474
Aor13HI	TCCGGA	1 cut(s)	598
AoxI	GGCC	2 cut(s)	452, 542
ApeKI	GCWGC	1 cut(s)	127
Asp718I	GGTACC	1 cut(s)	244
AspA2I	CCTAGG	1 cut(s)	34
AspS9I	GGNCC	3 cut(s)	452, 542, 596
AsuHPI	GGTGA	1 cut(s)	169
AvaII	GGWCC	1 cut(s)	596
AvrII	CCTAGG	1 cut(s)	34
BamHI	GGATCC	2 cut(s)	112, 139
BanI	GGYRCC	1 cut(s)	244
BauI	CACGAG	1 cut(s)	637
Bbv12I	GWGCWC	1 cut(s)	555
BbvCI	CCTCAGC	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	114
BccI	CCATC	1 cut(s)	591
BciT130I	CCWGG	2 cut(s)	188, 463
BcoDI	GTCTC	1 cut(s)	434
BfaI	CTAG	1 cut(s)	35
BfmI	CTRYAG	1 cut(s)	128
BfuAI	ACCTGC	1 cut(s)	188
BisI	GCNGC	2 cut(s)	6, 128
BlnI	CCTAGG	1 cut(s)	34
BlsI	GCNGC	2 cut(s)	7, 129
Bme1390I	CCNGG	2 cut(s)	188, 463
Bme18I	GGWCC	1 cut(s)	596
BmgT120I	GGNCC	3 cut(s)	452, 542, 596
BmiI	GGNNCC	4 cut(s)	114, 141, 170, 246
BmrFI	CCNGG	2 cut(s)	188, 463
BmsI	GCATC	1 cut(s)	277
BpmI	CTGGAG	1 cut(s)	302
Bpu10I	CCTNAGC	2 cut(s)	95, 321
BpuEI	CTTGAG	1 cut(s)	284
BsaJI	CCNNGG	3 cut(s)	34, 461, 462
BsaWI	WCCGGW	2 cut(s)	62, 598
BsaXI	ACNNNNNCTCC	2 cut(s)	373, 403
Bsc4I	CCNNNNNNNGG	5 cut(s)	165, 254, 326, 398, 539
Bse1I	ACTGG	2 cut(s)	213, 537
Bse3DI	GCAATG	1 cut(s)	517
BseAI	TCCGGA	1 cut(s)	598
BseBI	CCWGG	2 cut(s)	188, 463
BseDI	CCNNGG	3 cut(s)	34, 461, 462
BseGI	GGATG	1 cut(s)	505
BseLI	CCNNNNNNNGG	5 cut(s)	165, 254, 326, 398, 539
BseMI	GCAATG	1 cut(s)	517
BseMII	CTCAG	3 cut(s)	86, 312, 554
BseNI	ACTGG	2 cut(s)	213, 537
BseXI	GCAGC	1 cut(s)	114
BseYI	CCCAGC	1 cut(s)	135
BsgI	GTGCAG	1 cut(s)	145
Bsh1236I	CGCG	1 cut(s)	198
BshFI	GGCC	2 cut(s)	454, 544
BshNI	GGYRCC	1 cut(s)	244
BsiHKAI	GWGCWC	1 cut(s)	555
BsiSI	CCGG	2 cut(s)	63, 599
BslFI	GGGAC	1 cut(s)	394
BslI	CCNNNNNNNGG	5 cut(s)	165, 254, 326, 398, 539
BsmAI	GTCTC	1 cut(s)	434
BsmBI	CGTCTC	1 cut(s)	434
BsmFI	GGGAC	1 cut(s)	394
BsnI	GGCC	2 cut(s)	454, 544
Bsp1286I	GDGCHC	1 cut(s)	555
Bsp13I	TCCGGA	1 cut(s)	598
Bsp1407I	TGTACA	1 cut(s)	87
Bsp143I	GATC	3 cut(s)	112, 139, 466
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	2 cut(s)	454, 544
BspCNI	CTCAG	3 cut(s)	87, 313, 555
BspEI	TCCGGA	1 cut(s)	598
BspFNI	CGCG	1 cut(s)	198
BspLI	GGNNCC	4 cut(s)	114, 141, 170, 246
BspMAI	CTGCAG	1 cut(s)	132
BspMI	ACCTGC	1 cut(s)	188
BspPI	GGATC	5 cut(s)	107, 120, 134, 147, 474
BspQI	GCTCTTC	2 cut(s)	95, 332
BspT107I	GGYRCC	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	517
BsrGI	TGTACA	1 cut(s)	87
BsrI	ACTGG	2 cut(s)	213, 537
BssECI	CCNNGG	3 cut(s)	34, 461, 462
BssMI	GATC	3 cut(s)	112, 139, 466
BssSI	CACGAG	1 cut(s)	637
BssT1I	CCWWGG	1 cut(s)	34
Bst2BI	CACGAG	1 cut(s)	637
Bst2UI	CCWGG	2 cut(s)	188, 463
Bst6I	CTCTTC	2 cut(s)	95, 332
BstAUI	TGTACA	1 cut(s)	87
BstC8I	GCNNGC	3 cut(s)	484, 615, 619
BstDEI	CTNAG	3 cut(s)	95, 321, 563
BstEII	GGTNACC	1 cut(s)	329
BstF5I	GGATG	1 cut(s)	505
BstFNI	CGCG	1 cut(s)	198
BstKTI	GATC	3 cut(s)	115, 142, 469
BstMAI	GTCTC	1 cut(s)	434
BstMBI	GATC	3 cut(s)	112, 139, 466
BstMWI	GCNNNNNNNGC	2 cut(s)	348, 550
BstNI	CCWGG	2 cut(s)	188, 463
BstPI	GGTNACC	1 cut(s)	329
BstSCI	CCNGG	2 cut(s)	186, 461
BstSFI	CTRYAG	1 cut(s)	128
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	1 cut(s)	114
BstX2I	RGATCY	3 cut(s)	112, 139, 466
BstYI	RGATCY	3 cut(s)	112, 139, 466
BsuRI	GGCC	2 cut(s)	454, 544
BtsCI	GGATG	1 cut(s)	505
BtsIMutI	CAGTG	1 cut(s)	544
BveI	ACCTGC	1 cut(s)	188
Cac8I	GCNNGC	3 cut(s)	484, 615, 619
Cfr13I	GGNCC	3 cut(s)	452, 542, 596
CseI	GACGC	1 cut(s)	89
Csp6I	GTAC	2 cut(s)	88, 245
CviQI	GTAC	2 cut(s)	88, 245
DdeI	CTNAG	3 cut(s)	95, 321, 563
DpnI	GATC	3 cut(s)	114, 141, 468
DpnII	GATC	3 cut(s)	112, 139, 466
DrdI	GACNNNNNNGTC	1 cut(s)	594
DseDI	GACNNNNNNGTC	1 cut(s)	594
Eam1104I	CTCTTC	2 cut(s)	95, 332
EarI	CTCTTC	2 cut(s)	95, 332
Eco130I	CCWWGG	1 cut(s)	34
Eco47I	GGWCC	1 cut(s)	596
Eco57I	CTGAAG	1 cut(s)	356
Eco91I	GGTNACC	1 cut(s)	329
EcoO65I	GGTNACC	1 cut(s)	329
EcoRII	CCWGG	2 cut(s)	186, 461
EcoT14I	CCWWGG	1 cut(s)	34
ErhI	CCWWGG	1 cut(s)	34
Esp3I	CGTCTC	1 cut(s)	434
FaiI	YATR	4 cut(s)	361, 363, 374, 624
FaqI	GGGAC	1 cut(s)	394
Fnu4HI	GCNGC	2 cut(s)	6, 128
FokI	GGATG	1 cut(s)	512
Fsp4HI	GCNGC	2 cut(s)	6, 128
FspBI	CTAG	1 cut(s)	35
GluI	GCNGC	2 cut(s)	6, 128
GsaI	CCCAGC	1 cut(s)	139
GsuI	CTGGAG	1 cut(s)	302
HaeIII	GGCC	2 cut(s)	454, 544
HapII	CCGG	2 cut(s)	63, 599
HgaI	GACGC	1 cut(s)	89
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	1 cut(s)	74
HpaII	CCGG	2 cut(s)	63, 599
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	2 cut(s)	90, 154
Hpy188I	TCNGA	4 cut(s)	73, 79, 112, 564
Hpy188III	TCNNGA	5 cut(s)	116, 234, 281, 599, 639
Hpy8I	GTNNAC	2 cut(s)	90, 154
HpyAV	CCTTC	2 cut(s)	402, 587
HpyCH4IV	ACGT	2 cut(s)	123, 427
HpyCH4V	TGCA	5 cut(s)	130, 162, 183, 482, 617
HpyF10VI	GCNNNNNNNGC	2 cut(s)	348, 550
HpyF3I	CTNAG	3 cut(s)	95, 321, 563
HpySE526I	ACGT	2 cut(s)	123, 427
Kpn2I	TCCGGA	1 cut(s)	598
KpnI	GGTACC	1 cut(s)	248
Kzo9I	GATC	3 cut(s)	112, 139, 466
LguI	GCTCTTC	2 cut(s)	95, 332
LmnI	GCTCC	1 cut(s)	283
Lsp1109I	GCAGC	1 cut(s)	114
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	2 cut(s)	123, 427
MaeIII	GTNAC	3 cut(s)	65, 199, 329
MalI	GATC	3 cut(s)	114, 141, 468
MboI	GATC	3 cut(s)	112, 139, 466
MboII	GAAGA	3 cut(s)	112, 263, 349
MflI	RGATCY	3 cut(s)	112, 139, 466
MhlI	GDGCHC	1 cut(s)	555
MluCI	AATT	5 cut(s)	220, 384, 404, 456, 528
MnlI	CCTC	7 cut(s)	3, 90, 239, 353, 399, 497, 570
MroI	TCCGGA	1 cut(s)	598
MseI	TTAA	1 cut(s)	446
MspI	CCGG	2 cut(s)	63, 599
MspR9I	CCNGG	2 cut(s)	188, 463
MvaI	CCWGG	2 cut(s)	188, 463
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	2 cut(s)	348, 550
NdeII	GATC	3 cut(s)	112, 139, 466
NlaIV	GGNNCC	4 cut(s)	114, 141, 170, 246
PaqCI	CACCTGC	1 cut(s)	188
PasI	CCCWGGG	1 cut(s)	462
PciSI	GCTCTTC	2 cut(s)	95, 332
PcsI	WCGNNNNNNNCGW	1 cut(s)	202
PfeI	GAWTC	1 cut(s)	74
PkrI	GCNGC	2 cut(s)	7, 129
Psp6I	CCWGG	2 cut(s)	186, 461
PspEI	GGTNACC	1 cut(s)	329
PspFI	CCCAGC	1 cut(s)	135
PspGI	CCWGG	2 cut(s)	186, 461
PspN4I	GGNNCC	4 cut(s)	114, 141, 170, 246
PspPI	GGNCC	3 cut(s)	452, 542, 596
PsrI	GAACNNNNNNTAC	2 cut(s)	517, 549
PstI	CTGCAG	1 cut(s)	132
PsuI	RGATCY	3 cut(s)	112, 139, 466
RsaI	GTAC	2 cut(s)	89, 246
RsaNI	GTAC	2 cut(s)	88, 245
SapI	GCTCTTC	2 cut(s)	95, 332
SaqAI	TTAA	1 cut(s)	446
SatI	GCNGC	2 cut(s)	6, 128
Sau3AI	GATC	3 cut(s)	112, 139, 466
Sau96I	GGNCC	3 cut(s)	452, 542, 596
ScrFI	CCNGG	2 cut(s)	188, 463
SduI	GDGCHC	1 cut(s)	555
SfaNI	GCATC	1 cut(s)	277
SfcI	CTRYAG	1 cut(s)	128
SinI	GGWCC	1 cut(s)	596
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	5 cut(s)	220, 384, 404, 456, 528
SsiI	CCGC	1 cut(s)	5
SspI	AATATT	1 cut(s)	301
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	2 cut(s)	186, 461
StyI	CCWWGG	1 cut(s)	34
TaiI	ACGT	2 cut(s)	126, 430
TaqI	TCGA	2 cut(s)	506, 586
TasI	AATT	5 cut(s)	220, 384, 404, 456, 528
TatI	WGTACW	1 cut(s)	87
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	1 cut(s)	446
Tru9I	TTAA	1 cut(s)	446
TscAI	CASTG	1 cut(s)	544
TseI	GCWGC	1 cut(s)	127
TspDTI	ATGAA	1 cut(s)	450
TspRI	CASTG	1 cut(s)	544
VpaK11BI	GGWCC	1 cut(s)	596
XmaJI	CCTAGG	1 cut(s)	34
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.