Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001737

Physical Location & Seq

Genomic Coordinates Reverse (-)

77493128 .. 77496475

Gene Structure 3348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00055800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGAGGACGACCTGCTGGATACTATTGACACTAACCCTAGGCGCAAGTCTCATTCCTGGAGCACACCCTCTTTCAGAGACAGAAGCTTTGAATGCGTTTAAGAAGAACTTAAGTGATCCGCAAAACGTGCTCAGCACTTGGAATGCCAATCAAGCCGATCCATGCAGTTGGTCACACATCGTCTGCAATCAAGACAAAAAAGTCACTGGAGTGTTCTTAATTAACAGCCAGCTTTCTGGACATCTGGTACCTGAACTTGGATCGCTTTCGGCTCTCGAGCGGCTGATTCTTCCTCAGAATGACATCTCAGGAACAATTCCATCTGAGCTTGGTAACCTGAAGACACTCCAGACTCTCATATTAGGTTATAATAGATTATCGGGCAGCATTCCTCCTACACTGGATTCATCCAAAAGCTTGCTACTAGATTGGAGGAAGCGATTCAATATAATTGAAGGAATTGCTCAAGGATTGGTTTACTTGCATGTATACACAAGAATTAGAGTAATTCATAGAGACATAAAACCAAGTAATATTTTACTTGATGAAAGCTTTAATCCCAAAATTTCTGATTTTGGTTTGGCAAGAATTTTCACAAATGATAAAGAGAAAGCAAAGGCTCCTTGCATTTCTGGGACATGTGGTTACATATCTTCTGAGTACGCATTCTGCAGAATTTTTGGAGTAAAATCTGATGTCTTTAGTTCTGGAGTGGCAATGCTTGAAATTTTAAGTGGTAGAAGGTGTTTTGACTTCTCCAGAACTCTTACCGGGAATCTAATAGTCAATGCATGGGAGTTGTGGAAAAAAGATGATCGGCCAACCATGTCAGATGTGATATCTATGTTGATAATTAAAAGTGTGCAATTACCTCTGCCAAAAAGGCCAGCATATGGTATAGAAAATGATGTGGCTGAAGCTAGTATAAGTGAAATGATTCAGAAATTTCATCAACAGATGACATGTAAAAGTTCTGATTTTGATGGGGAAGGTGTGATGGGAGTGAGATCAGTGAGCGAAGAAGATGTGGCGACACTGTCTTTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

349

Amino Acids

38.62

Weight (kDa)

6.33

Isoelectric Point (pI)

36.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	25 - 63	2e-12	Leucine rich repeat N-terminal domain
PK_Tyr_Ser-Thr	PF07714	141 - 248	3.1e-18	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	145 - 310	3.2e-23	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43740 AT3G43740 AT5G21090
fragaria_vesca	FvH4_3g14800 FvH4_3g14810 FvH4_3g14820 FvH4_3g17980 FvH4_3g18020 FvH4_3g18100 FvH4_3g27550
malus_domestica	MD11G1182200.v1.1
prunus_persica	Prupe.6G154900_v2.0.a1
pyrus_communis	pycom11g15710
rosa_chinensis	RchiOBHm_Chr4g0425121 RchiOBHm_Chr5g0024351 RchiOBHm_Chr5g0030061 RchiOBHm_Chr5g0049921
rosa_laevigata	RLG00000001776 RLG00000007397 RLG00000007401 RLG00000032794 RLG00000033241 RLG00000034665
rosa_multiflora	Rmu_co8267339.1_g000001 Rmu_co8518351.1_g000002 Rmu_sc0000333.1_g000069 Rmu_sc0003368.1_g000001 Rmu_ssc0000420.1_g000033
rosa_roxburghii	Rroxscaffold_1G00031390 Rroxscaffold_1G00054880 Rroxscaffold_1G00055800 Rroxscaffold_5G00367190
rosa_rugosa	Rorug04G0201800 Rorug05G0254200
rosa_samantha	Rh3CG306200 Rh4BG264000 Rh4CG275100 Rh4DG260100 Rh5AG174000 Rh5AG328600 Rh5BG170800 Rh5BG208600 Rh5DG213000 Rh7DG379000
rosa_wichuraiana	Rw4G022350 Rw5G015690 Rw5G019100 Rw5G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	369
AasI	GACNNNNNNGTC	1 cut(s)	200
Acc36I	ACCTGC	1 cut(s)	20
Acc65I	GGTACC	1 cut(s)	247
AccB1I	GGYRCC	1 cut(s)	247
AccB7I	CCANNNNNTGG	1 cut(s)	893
AccBSI	CCGCTC	1 cut(s)	280
AccI	GTMKAC	1 cut(s)	489
AciI	CCGC	2 cut(s)	119, 280
AclWI	GGATC	3 cut(s)	110, 152, 268
AcoI	YGGCCR	1 cut(s)	818
AcsI	RAATTY	5 cut(s)	564, 588, 675, 726, 944
AcuI	CTGAAG	2 cut(s)	359, 936
AfaI	GTAC	2 cut(s)	249, 662
AfiI	CCNNNNNNNGG	2 cut(s)	257, 893
AflII	CTTAAG	1 cut(s)	109
AflIII	ACRYGT	2 cut(s)	638, 962
AgsI	TTSAA	4 cut(s)	91, 445, 455, 725
AjnI	CCWGG	1 cut(s)	55
AleI	CACNNNNGTG	1 cut(s)	209
AluBI	AGCT	6 cut(s)	86, 232, 328, 417, 552, 920
AluI	AGCT	6 cut(s)	86, 232, 328, 417, 552, 920
Alw21I	GWGCWC	2 cut(s)	64, 132
Alw26I	GTCTC	3 cut(s)	53, 71, 510
AlwI	GGATC	3 cut(s)	110, 152, 268
Ama87I	CYCGRG	1 cut(s)	275
AoxI	GGCC	2 cut(s)	818, 884
ApeKI	GCWGC	1 cut(s)	384
ApoI	RAATTY	5 cut(s)	564, 588, 675, 726, 944
ArsI	GACNNNNNNTTYG	3 cut(s)	70, 102, 1024
Asp700I	GAANNNNTTC	2 cut(s)	440, 936
Asp718I	GGTACC	1 cut(s)	247
AspA2I	CCTAGG	1 cut(s)	37
AspLEI	GCGC	1 cut(s)	44
AsuC2I	CCSGG	1 cut(s)	772
AvaI	CYCGRG	1 cut(s)	275
AvrII	CCTAGG	1 cut(s)	37
BanI	GGYRCC	1 cut(s)	247
BbsI	GAAGAC	1 cut(s)	347
Bbv12I	GWGCWC	2 cut(s)	64, 132
BbvI	GCAGC	1 cut(s)	396
BccI	CCATC	3 cut(s)	328, 977, 991
BciT130I	CCWGG	1 cut(s)	57
BciVI	GTATCC	1 cut(s)	12
BcnI	CCSGG	1 cut(s)	772
BcoDI	GTCTC	3 cut(s)	53, 71, 510
BfaI	CTAG	3 cut(s)	38, 425, 921
BfmI	CTRYAG	1 cut(s)	670
BfrI	CTTAAG	1 cut(s)	109
BfuAI	ACCTGC	1 cut(s)	20
BfuI	GTATCC	1 cut(s)	12
BglI	GCCNNNNNGGC	1 cut(s)	883
BisI	GCNGC	2 cut(s)	281, 385
BlnI	CCTAGG	1 cut(s)	37
BlpI	GCTNAGC	1 cut(s)	131
BlsI	GCNGC	2 cut(s)	282, 386
Bme1390I	CCNGG	2 cut(s)	57, 772
BmeT110I	CYCGRG	1 cut(s)	275
BmiI	GGNNCC	2 cut(s)	249, 621
BmrFI	CCNGG	2 cut(s)	57, 772
BpiI	GAAGAC	1 cut(s)	347
BpmI	CTGGAG	5 cut(s)	78, 228, 332, 729, 742
Bpu1102I	GCTNAGC	1 cut(s)	131
BpuEI	CTTGAG	1 cut(s)	450
BpuMI	CCSGG	1 cut(s)	772
BsaJI	CCNNGG	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 893
Bse1I	ACTGG	2 cut(s)	211, 405
Bse3DI	GCAATG	1 cut(s)	723
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	37
BseGI	GGATG	1 cut(s)	407
BseLI	CCNNNNNNNGG	2 cut(s)	257, 893
BseMI	GCAATG	1 cut(s)	723
BseMII	CTCAG	5 cut(s)	145, 308, 315, 321, 648
BseNI	ACTGG	2 cut(s)	211, 405
BseXI	GCAGC	1 cut(s)	396
BshFI	GGCC	2 cut(s)	820, 886
BshNI	GGYRCC	1 cut(s)	247
BsiHKAI	GWGCWC	2 cut(s)	64, 132
BsiHKCI	CYCGRG	1 cut(s)	275
BsiSI	CCGG	1 cut(s)	771
BslFI	GGGAC	1 cut(s)	649
BslI	CCNNNNNNNGG	2 cut(s)	257, 893
BsmAI	GTCTC	3 cut(s)	53, 71, 510
BsmFI	GGGAC	1 cut(s)	649
BsmI	GAATGC	4 cut(s)	97, 148, 387, 665
BsnI	GGCC	2 cut(s)	820, 886
BsoBI	CYCGRG	1 cut(s)	275
Bsp1286I	GDGCHC	2 cut(s)	64, 132
Bsp143I	GATC	5 cut(s)	115, 157, 260, 814, 1007
Bsp1720I	GCTNAGC	1 cut(s)	131
BspACI	CCGC	2 cut(s)	119, 280
BspANI	GGCC	2 cut(s)	820, 886
BspCNI	CTCAG	5 cut(s)	144, 307, 316, 320, 649
BspLI	GGNNCC	2 cut(s)	249, 621
BspMAI	CTGCAG	1 cut(s)	674
BspMI	ACCTGC	1 cut(s)	20
BspPI	GGATC	3 cut(s)	110, 152, 268
BspT107I	GGYRCC	1 cut(s)	247
BspTI	CTTAAG	1 cut(s)	109
BsrBI	CCGCTC	1 cut(s)	280
BsrDI	GCAATG	1 cut(s)	723
BsrI	ACTGG	2 cut(s)	211, 405
BssECI	CCNNGG	1 cut(s)	37
BssMI	GATC	5 cut(s)	115, 157, 260, 814, 1007
BssNAI	GTATAC	1 cut(s)	490
BssT1I	CCWWGG	1 cut(s)	37
Bst1107I	GTATAC	1 cut(s)	490
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	1 cut(s)	1038
BstAFI	CTTAAG	1 cut(s)	109
BstAPI	GCANNNNNTGC	1 cut(s)	127
BstC8I	GCNNGC	3 cut(s)	230, 419, 888
BstDEI	CTNAG	5 cut(s)	131, 294, 307, 324, 657
BstEII	GGTNACC	1 cut(s)	332
BstF5I	GGATG	1 cut(s)	407
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	5 cut(s)	118, 160, 263, 817, 1010
BstMAI	GTCTC	3 cut(s)	53, 71, 510
BstMBI	GATC	5 cut(s)	115, 157, 260, 814, 1007
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 127, 152, 883
BstNI	CCWGG	1 cut(s)	57
BstNSI	RCATGY	3 cut(s)	488, 642, 966
BstPI	GGTNACC	1 cut(s)	332
BstSCI	CCNGG	2 cut(s)	55, 770
BstSFI	CTRYAG	1 cut(s)	670
BstV1I	GCAGC	1 cut(s)	396
BstV2I	GAAGAC	1 cut(s)	347
BstXI	CCANNNNNNTGG	2 cut(s)	168, 236
BstZ17I	GTATAC	1 cut(s)	490
BsuI	GTATCC	1 cut(s)	12
BsuRI	GGCC	2 cut(s)	820, 886
BtsCI	GGATG	1 cut(s)	407
BtsIMutI	CAGTG	4 cut(s)	204, 398, 1017, 1034
BveI	ACCTGC	1 cut(s)	20
Cac8I	GCNNGC	3 cut(s)	230, 419, 888
CfoI	GCGC	1 cut(s)	44
Csp6I	GTAC	2 cut(s)	248, 661
CviAII	CATG	6 cut(s)	162, 485, 639, 792, 826, 963
CviQI	GTAC	2 cut(s)	248, 661
DdeI	CTNAG	5 cut(s)	131, 294, 307, 324, 657
DpnI	GATC	5 cut(s)	117, 159, 262, 816, 1009
DpnII	GATC	5 cut(s)	115, 157, 260, 814, 1007
DrdI	GACNNNNNNGTC	1 cut(s)	200
DseDI	GACNNNNNNGTC	1 cut(s)	200
EaeI	YGGCCR	1 cut(s)	818
Eco130I	CCWWGG	1 cut(s)	37
Eco32I	GATATC	1 cut(s)	840
Eco57I	CTGAAG	2 cut(s)	359, 936
Eco88I	CYCGRG	1 cut(s)	275
Eco91I	GGTNACC	1 cut(s)	332
EcoO65I	GGTNACC	1 cut(s)	332
EcoRII	CCWGG	1 cut(s)	55
EcoRV	GATATC	1 cut(s)	840
EcoT14I	CCWWGG	1 cut(s)	37
EcoT22I	ATGCAT	1 cut(s)	793
ErhI	CCWWGG	1 cut(s)	37
FaeI	CATG	6 cut(s)	165, 488, 642, 795, 829, 966
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FaqI	GGGAC	1 cut(s)	649
FatI	CATG	6 cut(s)	161, 484, 638, 791, 825, 962
FauNDI	CATATG	1 cut(s)	892
FblI	GTMKAC	1 cut(s)	489
Fnu4HI	GCNGC	2 cut(s)	281, 385
FokI	GGATG	1 cut(s)	394
Fsp4HI	GCNGC	2 cut(s)	281, 385
FspBI	CTAG	3 cut(s)	38, 425, 921
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	2 cut(s)	281, 385
GsuI	CTGGAG	5 cut(s)	78, 228, 332, 729, 742
HaeIII	GGCC	2 cut(s)	820, 886
HapII	CCGG	1 cut(s)	771
HhaI	GCGC	1 cut(s)	44
Hin1II	CATG	6 cut(s)	165, 488, 642, 795, 829, 966
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HindIII	AAGCTT	3 cut(s)	84, 415, 550
HinfI	GANTC	6 cut(s)	286, 352, 404, 441, 775, 937
HpaII	CCGG	1 cut(s)	771
Hpy166II	GTNNAC	2 cut(s)	478, 490
Hpy188I	TCNGA	9 cut(s)	76, 297, 325, 571, 658, 694, 832, 942, 976
Hpy188III	TCNNGA	7 cut(s)	191, 237, 275, 309, 349, 708, 759
Hpy8I	GTNNAC	2 cut(s)	478, 490
HpyAV	CCTTC	3 cut(s)	449, 735, 983
HpyCH4III	ACNGT	1 cut(s)	1038
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	7 cut(s)	165, 186, 484, 627, 672, 791, 865
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 127, 152, 883
HpyF3I	CTNAG	5 cut(s)	131, 294, 307, 324, 657
HpySE526I	ACGT	1 cut(s)	126
Hsp92II	CATG	6 cut(s)	165, 488, 642, 795, 829, 966
HspAI	GCGC	1 cut(s)	42
KpnI	GGTACC	1 cut(s)	251
Kzo9I	GATC	5 cut(s)	115, 157, 260, 814, 1007
LmnI	GCTCC	2 cut(s)	59, 625
Lsp1109I	GCAGC	1 cut(s)	396
MaeI	CTAG	3 cut(s)	38, 425, 921
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	4 cut(s)	171, 202, 332, 644
MalI	GATC	5 cut(s)	117, 159, 262, 816, 1009
MbiI	CCGCTC	1 cut(s)	280
MboI	GATC	5 cut(s)	115, 157, 260, 814, 1007
MboII	GAAGA	6 cut(s)	115, 281, 352, 645, 1031, 1034
MhlI	GDGCHC	2 cut(s)	64, 132
MlyI	GAGTC	1 cut(s)	346
MnlI	CCTC	5 cut(s)	78, 303, 402, 426, 882
Mph1103I	ATGCAT	1 cut(s)	793
MroXI	GAANNNNTTC	2 cut(s)	440, 936
MseI	TTAA	7 cut(s)	99, 110, 218, 222, 555, 731, 855
MslI	CAYNNNNRTG	1 cut(s)	209
MspCI	CTTAAG	1 cut(s)	109
MspI	CCGG	1 cut(s)	771
MspR9I	CCNGG	2 cut(s)	57, 772
Mva1269I	GAATGC	4 cut(s)	97, 148, 387, 665
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	4 cut(s)	92, 127, 152, 883
NciI	CCSGG	1 cut(s)	772
NdeI	CATATG	1 cut(s)	892
NdeII	GATC	5 cut(s)	115, 157, 260, 814, 1007
NlaIII	CATG	6 cut(s)	165, 488, 642, 795, 829, 966
NlaIV	GGNNCC	2 cut(s)	249, 621
NmuCI	GTSAC	2 cut(s)	171, 202
NsiI	ATGCAT	1 cut(s)	793
NspI	RCATGY	3 cut(s)	488, 642, 966
OliI	CACNNNNGTG	1 cut(s)	209
PacI	TTAATTAA	1 cut(s)	222
PaeR7I	CTCGAG	1 cut(s)	275
PciI	ACATGT	2 cut(s)	638, 962
PctI	GAATGC	4 cut(s)	97, 148, 387, 665
PdmI	GAANNNNTTC	2 cut(s)	440, 936
PfeI	GAWTC	5 cut(s)	286, 404, 441, 775, 937
PflFI	GACNNNGTC	1 cut(s)	1036
PflMI	CCANNNNNTGG	1 cut(s)	893
PfoI	TCCNGGA	1 cut(s)	55
PkrI	GCNGC	2 cut(s)	282, 386
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
PscI	ACATGT	2 cut(s)	638, 962
PsiI	TTATAA	1 cut(s)	369
Psp6I	CCWGG	1 cut(s)	55
PspEI	GGTNACC	1 cut(s)	332
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	2 cut(s)	249, 621
PstI	CTGCAG	1 cut(s)	674
PsyI	GACNNNGTC	1 cut(s)	1036
RsaI	GTAC	2 cut(s)	249, 662
RsaNI	GTAC	2 cut(s)	248, 661
RseI	CAYNNNNRTG	1 cut(s)	209
SaqAI	TTAA	7 cut(s)	99, 110, 218, 222, 555, 731, 855
SatI	GCNGC	2 cut(s)	281, 385
Sau3AI	GATC	5 cut(s)	115, 157, 260, 814, 1007
SchI	GAGTC	1 cut(s)	346
ScrFI	CCNGG	2 cut(s)	57, 772
SduI	GDGCHC	2 cut(s)	64, 132
SfcI	CTRYAG	1 cut(s)	670
Sfr274I	CTCGAG	1 cut(s)	275
SlaI	CTCGAG	1 cut(s)	275
SmiMI	CAYNNNNRTG	1 cut(s)	209
SmlI	CTYRAG	3 cut(s)	109, 275, 465
SmoI	CTYRAG	3 cut(s)	109, 275, 465
SsiI	CCGC	2 cut(s)	119, 280
SspI	AATATT	1 cut(s)	535
SspMI	CTAG	3 cut(s)	38, 425, 921
StyD4I	CCNGG	2 cut(s)	55, 770
StyI	CCWWGG	1 cut(s)	37
TaaI	ACNGT	1 cut(s)	1038
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	1 cut(s)	276
TauI	GCSGC	1 cut(s)	283
TfiI	GAWTC	5 cut(s)	286, 404, 441, 775, 937
Tru1I	TTAA	7 cut(s)	99, 110, 218, 222, 555, 731, 855
Tru9I	TTAA	7 cut(s)	99, 110, 218, 222, 555, 731, 855
TscAI	CASTG	4 cut(s)	211, 405, 1017, 1041
TseFI	GTSAC	2 cut(s)	171, 202
TseI	GCWGC	1 cut(s)	384
Tsp45I	GTSAC	2 cut(s)	171, 202
TspDTI	ATGAA	4 cut(s)	396, 500, 561, 938
TspRI	CASTG	4 cut(s)	211, 405, 1017, 1041
Tth111I	GACNNNGTC	1 cut(s)	1036
Van91I	CCANNNNNTGG	1 cut(s)	893
Vha464I	CTTAAG	1 cut(s)	109
XapI	RAATTY	5 cut(s)	564, 588, 675, 726, 944
XceI	RCATGY	3 cut(s)	488, 642, 966
XhoI	CTCGAG	1 cut(s)	275
XmaJI	CCTAGG	1 cut(s)	37
XmiI	GTMKAC	1 cut(s)	489
XmnI	GAANNNNTTC	2 cut(s)	440, 936
XspI	CTAG	3 cut(s)	38, 425, 921
Zsp2I	ATGCAT	1 cut(s)	793

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.