Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001737

Physical Location & Seq

Genomic Coordinates Forward (+)

7164560 .. 7167351

Gene Structure 2792 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G21090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCGTCTCGAAACTATCGGTGGGAGCTCTTCGCAGCTTCGTTAACCCTAACCTTAGCTTTGATTCACCTGGTCGAAGCAAACTCCGAAGGAGATGCTCTCTACGCTCTTCGCCGGAGTTTGACAGATCCAGACCATGTCCTCCAGAGCTGGGATCCAACTCTTGTTAATCCTTGTACCTGGTTCCATGTCACCTGTAACCAAGACAACCGCGTCACTCGTGTGGATTTGGGAAATTCAAACCTCTCTGGACATCTTGCGCCTGAGCTTGGGAAGCTTGAACATTTACAGTATCTAGAGCTCTACAAAAACAACATCCAAGGAACTATACCTTCCGAACTTGGAAATCTGAAGAATCTCATCAGCTTGGATCTGTACAACAACAATCTTACAGGGATAGTTCCCACTTCTTTGGGAAAATTGAAGTCTCTGGTCTTTTTACGGCTTAATGACAACCGATTGACCGGTCCAATCCCTAGAGCACTCACGGCAATCCCAAGCCTTAAAGTTGTTGACGTCTCAAGCAATGATTTGTGTGGAACAATCCCAACAAACGGACCCTTTGCTCACATTCCTTTACAGAACTTTGAGAACAACCCGAGATTGGAGGGACCGGAATTACTCGGTCTTGCAAGCTACGACACTAACTGCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8

Protein Analysis

218

Amino Acids

24.1

Weight (kDa)

5.63

Isoelectric Point (pI)

29.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	28 - 67	7.8e-13	Leucine rich repeat N-terminal domain
LRR_14	PF23598	76 - 175	5.3e-13	Leucine-rich repeat region
LRR_8	PF13855	95 - 154	1.4e-09	Leucine rich repeat
LRR_4	PF12799	118 - 154	9.1e-06	Leucine Rich repeats (2 copies)
LRR_8	PF13855	119 - 178	1.4e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43740 AT3G43740 AT5G21090
fragaria_vesca	FvH4_3g14800 FvH4_3g14810 FvH4_3g14820 FvH4_3g17980 FvH4_3g18020 FvH4_3g18100 FvH4_3g27550
malus_domestica	MD11G1182200.v1.1
prunus_persica	Prupe.6G154900_v2.0.a1
pyrus_communis	pycom11g15710
rosa_chinensis	RchiOBHm_Chr4g0425121 RchiOBHm_Chr5g0024351 RchiOBHm_Chr5g0030061 RchiOBHm_Chr5g0049921
rosa_laevigata	RLG00000001776 RLG00000007397 RLG00000007401 RLG00000032794 RLG00000033241 RLG00000034665
rosa_multiflora	Rmu_co8267339.1_g000001 Rmu_co8518351.1_g000002 Rmu_sc0000333.1_g000069 Rmu_sc0003368.1_g000001 Rmu_ssc0000420.1_g000033
rosa_roxburghii	Rroxscaffold_1G00031390 Rroxscaffold_1G00054880 Rroxscaffold_1G00055800 Rroxscaffold_5G00367190
rosa_rugosa	Rorug04G0201800 Rorug05G0254200
rosa_samantha	Rh3CG306200 Rh4BG264000 Rh4CG275100 Rh4DG260100 Rh5AG174000 Rh5AG328600 Rh5BG170800 Rh5BG208600 Rh5DG213000 Rh7DG379000
rosa_wichuraiana	Rw4G022350 Rw5G015690 Rw5G019100 Rw5G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	212
AatII	GACGTC	1 cut(s)	519
AccII	CGCG	1 cut(s)	213
AciI	CCGC	1 cut(s)	211
AclWI	GGATC	4 cut(s)	122, 149, 162, 378
AcsI	RAATTY	1 cut(s)	235
AcuI	CTGAAG	1 cut(s)	371
AcyI	GRCGYC	2 cut(s)	5, 516
AfaI	GTAC	2 cut(s)	178, 377
AfiI	CCNNNNNNNGG	4 cut(s)	151, 269, 554, 604
AgeI	ACCGGT	1 cut(s)	464
AgsI	TTSAA	3 cut(s)	240, 281, 424
AjnI	CCWGG	2 cut(s)	69, 179
AleI	CACNNNNGTG	1 cut(s)	221
AluBI	AGCT	9 cut(s)	28, 38, 59, 150, 268, 277, 301, 366, 636
AluI	AGCT	9 cut(s)	28, 38, 59, 150, 268, 277, 301, 366, 636
Alw21I	GWGCWC	3 cut(s)	30, 303, 484
Alw26I	GTCTC	3 cut(s)	12, 432, 523
AlwI	GGATC	4 cut(s)	122, 149, 162, 378
Ama87I	CYCGRG	1 cut(s)	598
ApeKI	GCWGC	1 cut(s)	35
ApoI	RAATTY	1 cut(s)	235
AsiGI	ACCGGT	1 cut(s)	464
AspLEI	GCGC	1 cut(s)	262
AspS9I	GGNCC	3 cut(s)	467, 557, 611
AsuHPI	GGTGA	2 cut(s)	59, 184
AvaI	CYCGRG	1 cut(s)	598
AvaII	GGWCC	3 cut(s)	467, 557, 611
BamHI	GGATCC	1 cut(s)	154
BanII	GRGCYC	2 cut(s)	30, 303
BauI	CACGAG	1 cut(s)	219
Bbv12I	GWGCWC	3 cut(s)	30, 303, 484
BbvI	GCAGC	1 cut(s)	47
BceAI	ACGGC	2 cut(s)	458, 504
BcgI	CGANNNNNNTGC	2 cut(s)	77, 111
BciT130I	CCWGG	2 cut(s)	71, 181
BcoDI	GTCTC	3 cut(s)	12, 432, 523
BfaI	CTAG	2 cut(s)	296, 477
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
Bme1390I	CCNGG	2 cut(s)	71, 181
Bme18I	GGWCC	3 cut(s)	467, 557, 611
BmeT110I	CYCGRG	1 cut(s)	598
BmgT120I	GGNCC	3 cut(s)	467, 557, 611
BmiI	GGNNCC	4 cut(s)	156, 185, 559, 612
BmrFI	CCNGG	2 cut(s)	71, 181
BmsI	GCATC	1 cut(s)	85
BplI	GAGNNNNNCTC	2 cut(s)	84, 116
BpmI	CTGGAG	1 cut(s)	128
Bpu10I	CCTNAGC	2 cut(s)	55, 264
BpuEI	CTTGAG	1 cut(s)	505
BsaHI	GRCGYC	2 cut(s)	5, 516
BsaJI	CCNNGG	1 cut(s)	319
BsaWI	WCCGGW	2 cut(s)	464, 613
Bsc4I	CCNNNNNNNGG	4 cut(s)	151, 269, 554, 604
Bse118I	RCCGGY	1 cut(s)	464
Bse3DI	GCAATG	1 cut(s)	532
BseBI	CCWGG	2 cut(s)	71, 181
BseDI	CCNNGG	1 cut(s)	319
BseGI	GGATG	1 cut(s)	315
BseLI	CCNNNNNNNGG	4 cut(s)	151, 269, 554, 604
BseMI	GCAATG	1 cut(s)	532
BseMII	CTCAG	1 cut(s)	255
BseXI	GCAGC	1 cut(s)	47
BseYI	CCCAGC	1 cut(s)	150
BsgI	GTGCAG	1 cut(s)	634
Bsh1236I	CGCG	1 cut(s)	213
BshTI	ACCGGT	1 cut(s)	464
BsiHKAI	GWGCWC	3 cut(s)	30, 303, 484
BsiHKCI	CYCGRG	1 cut(s)	598
BsiSI	CCGG	3 cut(s)	115, 465, 614
BslFI	GGGAC	1 cut(s)	624
BslI	CCNNNNNNNGG	4 cut(s)	151, 269, 554, 604
BsmAI	GTCTC	3 cut(s)	12, 432, 523
BsmBI	CGTCTC	2 cut(s)	12, 523
BsmFI	GGGAC	1 cut(s)	624
BsoBI	CYCGRG	1 cut(s)	598
Bsp1286I	GDGCHC	3 cut(s)	30, 303, 484
Bsp1407I	TGTACA	1 cut(s)	375
Bsp143I	GATC	3 cut(s)	127, 154, 370
BspACI	CCGC	1 cut(s)	211
BspCNI	CTCAG	1 cut(s)	256
BspFNI	CGCG	1 cut(s)	213
BspLI	GGNNCC	4 cut(s)	156, 185, 559, 612
BspPI	GGATC	4 cut(s)	122, 149, 162, 378
BspQI	GCTCTTC	2 cut(s)	35, 114
BsrDI	GCAATG	1 cut(s)	532
BsrFI	RCCGGY	1 cut(s)	464
BsrGI	TGTACA	1 cut(s)	375
BssAI	RCCGGY	1 cut(s)	464
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	3 cut(s)	127, 154, 370
BssNI	GRCGYC	2 cut(s)	5, 516
BssSI	CACGAG	1 cut(s)	219
BssT1I	CCWWGG	1 cut(s)	319
Bst2BI	CACGAG	1 cut(s)	219
Bst2UI	CCWGG	2 cut(s)	71, 181
Bst4CI	ACNGT	1 cut(s)	291
Bst6I	CTCTTC	2 cut(s)	35, 114
BstACI	GRCGYC	2 cut(s)	5, 516
BstAUI	TGTACA	1 cut(s)	375
BstC8I	GCNNGC	1 cut(s)	634
BstDEI	CTNAG	2 cut(s)	55, 264
BstF5I	GGATG	1 cut(s)	315
BstFNI	CGCG	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	262
BstKTI	GATC	3 cut(s)	130, 157, 373
BstMAI	GTCTC	3 cut(s)	12, 432, 523
BstMBI	GATC	3 cut(s)	127, 154, 370
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 274, 488
BstNI	CCWGG	2 cut(s)	71, 181
BstSCI	CCNGG	2 cut(s)	69, 179
BstUI	CGCG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	47
BstX2I	RGATCY	3 cut(s)	127, 154, 370
BstXI	CCANNNNNNTGG	1 cut(s)	412
BstYI	RGATCY	3 cut(s)	127, 154, 370
BtsCI	GGATG	1 cut(s)	315
Cac8I	GCNNGC	1 cut(s)	634
CfoI	GCGC	1 cut(s)	262
Cfr10I	RCCGGY	1 cut(s)	464
Cfr13I	GGNCC	3 cut(s)	467, 557, 611
CseI	GACGC	1 cut(s)	202
CsiI	ACCWGGT	2 cut(s)	69, 179
Csp6I	GTAC	2 cut(s)	177, 376
CspAI	ACCGGT	1 cut(s)	464
CviAII	CATG	2 cut(s)	137, 188
CviQI	GTAC	2 cut(s)	177, 376
DdeI	CTNAG	2 cut(s)	55, 264
DpnI	GATC	3 cut(s)	129, 156, 372
DpnII	GATC	3 cut(s)	127, 154, 370
DrdI	GACNNNNNNGTC	1 cut(s)	212
DseDI	GACNNNNNNGTC	1 cut(s)	212
Eam1104I	CTCTTC	2 cut(s)	35, 114
EarI	CTCTTC	2 cut(s)	35, 114
Ecl136II	GAGCTC	2 cut(s)	28, 301
Eco130I	CCWWGG	1 cut(s)	319
Eco24I	GRGCYC	2 cut(s)	30, 303
Eco47I	GGWCC	3 cut(s)	467, 557, 611
Eco53kI	GAGCTC	2 cut(s)	28, 301
Eco57I	CTGAAG	1 cut(s)	371
Eco88I	CYCGRG	1 cut(s)	598
EcoICRI	GAGCTC	2 cut(s)	28, 301
EcoRII	CCWGG	2 cut(s)	69, 179
EcoT14I	CCWWGG	1 cut(s)	319
EcoT38I	GRGCYC	2 cut(s)	30, 303
ErhI	CCWWGG	1 cut(s)	319
Esp3I	CGTCTC	2 cut(s)	12, 523
FaeI	CATG	2 cut(s)	140, 191
FaiI	YATR	3 cut(s)	138, 189, 329
FaqI	GGGAC	1 cut(s)	624
FatI	CATG	2 cut(s)	136, 187
Fnu4HI	GCNGC	1 cut(s)	36
FokI	GGATG	1 cut(s)	302
FriOI	GRGCYC	2 cut(s)	30, 303
Fsp4HI	GCNGC	1 cut(s)	36
FspBI	CTAG	2 cut(s)	296, 477
GlaI	GCGC	1 cut(s)	261
GluI	GCNGC	1 cut(s)	36
GsaI	CCCAGC	1 cut(s)	154
GsuI	CTGGAG	1 cut(s)	128
HapII	CCGG	3 cut(s)	115, 465, 614
HgaI	GACGC	1 cut(s)	202
HhaI	GCGC	1 cut(s)	262
Hin1I	GRCGYC	2 cut(s)	5, 516
Hin1II	CATG	2 cut(s)	140, 191
Hin6I	GCGC	1 cut(s)	260
HinP1I	GCGC	1 cut(s)	260
HincII	GTYRAC	2 cut(s)	45, 514
HindII	GTYRAC	2 cut(s)	45, 514
HindIII	AAGCTT	1 cut(s)	275
HinfI	GANTC	2 cut(s)	64, 355
HpaI	GTTAAC	1 cut(s)	45
HpaII	CCGG	3 cut(s)	115, 465, 614
HphI	GGTGA	2 cut(s)	59, 184
Hpy166II	GTNNAC	2 cut(s)	45, 514
Hpy188I	TCNGA	3 cut(s)	88, 337, 351
Hpy188III	TCNNGA	5 cut(s)	9, 131, 145, 249, 296
Hpy8I	GTNNAC	2 cut(s)	45, 514
HpyAV	CCTTC	2 cut(s)	83, 342
HpyCH4III	ACNGT	1 cut(s)	291
HpyCH4IV	ACGT	1 cut(s)	516
HpyCH4V	TGCA	2 cut(s)	632, 651
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 274, 488
HpyF3I	CTNAG	2 cut(s)	55, 264
HpySE526I	ACGT	1 cut(s)	516
Hsp92I	GRCGYC	2 cut(s)	5, 516
Hsp92II	CATG	2 cut(s)	140, 191
HspAI	GCGC	1 cut(s)	260
KspAI	GTTAAC	1 cut(s)	45
Kzo9I	GATC	3 cut(s)	127, 154, 370
LguI	GCTCTTC	2 cut(s)	35, 114
LmnI	GCTCC	1 cut(s)	25
Lsp1109I	GCAGC	1 cut(s)	47
LweI	GCATC	1 cut(s)	85
MabI	ACCWGGT	2 cut(s)	69, 179
MaeI	CTAG	2 cut(s)	296, 477
MaeII	ACGT	1 cut(s)	516
MaeIII	GTNAC	3 cut(s)	190, 197, 214
MalI	GATC	3 cut(s)	129, 156, 372
MboI	GATC	3 cut(s)	127, 154, 370
MboII	GAAGA	3 cut(s)	22, 101, 364
MflI	RGATCY	3 cut(s)	127, 154, 370
MhlI	GDGCHC	3 cut(s)	30, 303, 484
MluCI	AATT	3 cut(s)	235, 419, 617
MmeI	TCCRAC	1 cut(s)	182
MnlI	CCTC	3 cut(s)	152, 254, 601
MseI	TTAA	4 cut(s)	44, 168, 447, 504
MslI	CAYNNNNRTG	1 cut(s)	221
MspI	CCGG	3 cut(s)	115, 465, 614
MspR9I	CCNGG	2 cut(s)	71, 181
MvaI	CCWGG	2 cut(s)	71, 181
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	3 cut(s)	104, 274, 488
NdeII	GATC	3 cut(s)	127, 154, 370
NlaIII	CATG	2 cut(s)	140, 191
NlaIV	GGNNCC	4 cut(s)	156, 185, 559, 612
NmuCI	GTSAC	2 cut(s)	190, 214
OliI	CACNNNNGTG	1 cut(s)	221
PciSI	GCTCTTC	2 cut(s)	35, 114
PfeI	GAWTC	2 cut(s)	64, 355
PflFI	GACNNNGTC	1 cut(s)	137
PinAI	ACCGGT	1 cut(s)	464
PkrI	GCNGC	1 cut(s)	37
Psp124BI	GAGCTC	2 cut(s)	30, 303
Psp6I	CCWGG	2 cut(s)	69, 179
PspFI	CCCAGC	1 cut(s)	150
PspGI	CCWGG	2 cut(s)	69, 179
PspN4I	GGNNCC	4 cut(s)	156, 185, 559, 612
PspPI	GGNCC	3 cut(s)	467, 557, 611
PsuI	RGATCY	3 cut(s)	127, 154, 370
PsyI	GACNNNGTC	1 cut(s)	137
RsaI	GTAC	2 cut(s)	178, 377
RsaNI	GTAC	2 cut(s)	177, 376
RseI	CAYNNNNRTG	1 cut(s)	221
SacI	GAGCTC	2 cut(s)	30, 303
SapI	GCTCTTC	2 cut(s)	35, 114
SaqAI	TTAA	4 cut(s)	44, 168, 447, 504
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	3 cut(s)	127, 154, 370
Sau96I	GGNCC	3 cut(s)	467, 557, 611
ScrFI	CCNGG	2 cut(s)	71, 181
SduI	GDGCHC	3 cut(s)	30, 303, 484
SexAI	ACCWGGT	2 cut(s)	69, 179
SfaNI	GCATC	1 cut(s)	85
SinI	GGWCC	3 cut(s)	467, 557, 611
SmiMI	CAYNNNNRTG	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	520
SmoI	CTYRAG	1 cut(s)	520
Sse9I	AATT	3 cut(s)	235, 419, 617
SsiI	CCGC	1 cut(s)	211
SspMI	CTAG	2 cut(s)	296, 477
SstI	GAGCTC	2 cut(s)	30, 303
StyD4I	CCNGG	2 cut(s)	69, 179
StyI	CCWWGG	1 cut(s)	319
TaaI	ACNGT	1 cut(s)	291
TaiI	ACGT	1 cut(s)	519
TaqI	TCGA	2 cut(s)	10, 75
TaqII	GACCGA	1 cut(s)	614
TasI	AATT	3 cut(s)	235, 419, 617
TatI	WGTACW	1 cut(s)	375
TfiI	GAWTC	2 cut(s)	64, 355
Tru1I	TTAA	4 cut(s)	44, 168, 447, 504
Tru9I	TTAA	4 cut(s)	44, 168, 447, 504
TseFI	GTSAC	2 cut(s)	190, 214
TseI	GCWGC	1 cut(s)	35
Tsp45I	GTSAC	2 cut(s)	190, 214
TspGWI	ACGGA	1 cut(s)	570
Tth111I	GACNNNGTC	1 cut(s)	137
VpaK11BI	GGWCC	3 cut(s)	467, 557, 611
XapI	RAATTY	1 cut(s)	235
XbaI	TCTAGA	1 cut(s)	295
XspI	CTAG	2 cut(s)	296, 477
ZraI	GACGTC	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.