Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001737

Physical Location & Seq

Genomic Coordinates Reverse (-)

11437693 .. 11438220

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g17980.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCAATGGGGAGAACTAGTAGTATGTTGTTGATCCTGACCCTATGTGCATGTCTCCTTCCTACAGCACACCCCCTCGTCTCAGAGGTAAAAGTTTTGGCAGTGTTTAAGAATAGCTTACAAGATCCAAACAATGTTCTTCAAAGCTGGGATCCAACAGTTCCAGGGATTGACAATCCATGCGGCTGGGTAGGCGTCCAGTGCAACACTCAATATAAGGTCCAGACAGTGAACTTGATTTACAATAATCTCTCTGGACAACTCGTACCTGAACTCGGTCTACTTTCAGATCTCGAGTATCTACTACTTTATGGAAATATGATCACAGGAACAATACCAGCTGAGCTTGGAAACCTAAAGAAGCTGTACCAGATCAACTTGAGACAGAACAAGTTAAGTGGGAAAATCCCCTCTTCAATTGCAAACCTTCCGATGCTTCACTCTGCTGATTTTTCTGACAACGGCGCGTTATGTTGGGAGTTTCAGCCCGCTCCACCAAAATTTCTGGGGGATTACCCATTATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8

Protein Analysis

176

Amino Acids

19.16

Weight (kDa)

5.56

Isoelectric Point (pI)

29.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	28 - 69	9.6e-10	Leucine rich repeat N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43740 AT3G43740 AT5G21090
fragaria_vesca	FvH4_3g14800 FvH4_3g14810 FvH4_3g14820 FvH4_3g17980 FvH4_3g18020 FvH4_3g18100 FvH4_3g27550
malus_domestica	MD11G1182200.v1.1
prunus_persica	Prupe.6G154900_v2.0.a1
pyrus_communis	pycom11g15710
rosa_chinensis	RchiOBHm_Chr4g0425121 RchiOBHm_Chr5g0024351 RchiOBHm_Chr5g0030061 RchiOBHm_Chr5g0049921
rosa_laevigata	RLG00000001776 RLG00000007397 RLG00000007401 RLG00000032794 RLG00000033241 RLG00000034665
rosa_multiflora	Rmu_co8267339.1_g000001 Rmu_co8518351.1_g000002 Rmu_sc0000333.1_g000069 Rmu_sc0003368.1_g000001 Rmu_ssc0000420.1_g000033
rosa_roxburghii	Rroxscaffold_1G00031390 Rroxscaffold_1G00054880 Rroxscaffold_1G00055800 Rroxscaffold_5G00367190
rosa_rugosa	Rorug04G0201800 Rorug05G0254200
rosa_samantha	Rh3CG306200 Rh4BG264000 Rh4CG275100 Rh4DG260100 Rh5AG174000 Rh5AG328600 Rh5BG170800 Rh5BG208600 Rh5DG213000 Rh7DG379000
rosa_wichuraiana	Rw4G022350 Rw5G015690 Rw5G019100 Rw5G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	491
AccI	GTMKAC	1 cut(s)	280
AccII	CGCG	1 cut(s)	467
AciI	CCGC	2 cut(s)	183, 489
AclWI	GGATC	4 cut(s)	28, 119, 146, 159
AcsI	RAATTY	1 cut(s)	500
AcyI	GRCGYC	1 cut(s)	195
AfaI	GTAC	2 cut(s)	267, 368
AfiI	CCNNNNNNNGG	1 cut(s)	275
AgsI	TTSAA	2 cut(s)	143, 417
AhlI	ACTAGT	1 cut(s)	17
AjnI	CCWGG	1 cut(s)	163
AluBI	AGCT	5 cut(s)	117, 147, 341, 346, 364
AluI	AGCT	5 cut(s)	117, 147, 341, 346, 364
Alw26I	GTCTC	3 cut(s)	59, 85, 376
AlwI	GGATC	4 cut(s)	28, 119, 146, 159
Ama87I	CYCGRG	1 cut(s)	293
ApoI	RAATTY	1 cut(s)	500
AspLEI	GCGC	1 cut(s)	467
AspS9I	GGNCC	1 cut(s)	220
AvaI	CYCGRG	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	220
BamHI	GGATCC	1 cut(s)	151
BceAI	ACGGC	1 cut(s)	478
BciT130I	CCWGG	1 cut(s)	165
BclI	TGATCA	1 cut(s)	321
BcoDI	GTCTC	3 cut(s)	59, 85, 376
BcuI	ACTAGT	1 cut(s)	17
BfaI	CTAG	2 cut(s)	18, 526
BfmI	CTRYAG	1 cut(s)	63
BglII	AGATCT	1 cut(s)	289
BisI	GCNGC	1 cut(s)	184
BlpI	GCTNAGC	1 cut(s)	342
BlsI	GCNGC	1 cut(s)	185
Bme1390I	CCNGG	1 cut(s)	165
Bme18I	GGWCC	1 cut(s)	220
BmeT110I	CYCGRG	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	220
BmiI	GGNNCC	1 cut(s)	153
BmrFI	CCNGG	1 cut(s)	165
BmsI	GCATC	1 cut(s)	423
Bpu1102I	GCTNAGC	1 cut(s)	342
BpuEI	CTTGAG	1 cut(s)	400
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	164
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	199
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	164
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	2 cut(s)	96, 333
BseNI	ACTGG	1 cut(s)	199
BseYI	CCCAGC	2 cut(s)	147, 186
Bsh1236I	CGCG	1 cut(s)	467
BsiHKCI	CYCGRG	1 cut(s)	293
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmAI	GTCTC	3 cut(s)	59, 85, 376
BsmBI	CGTCTC	1 cut(s)	85
BsoBI	CYCGRG	1 cut(s)	293
Bsp143I	GATC	6 cut(s)	33, 124, 151, 289, 321, 372
Bsp1720I	GCTNAGC	1 cut(s)	342
BspACI	CCGC	2 cut(s)	183, 489
BspCNI	CTCAG	2 cut(s)	95, 334
BspFNI	CGCG	1 cut(s)	467
BspLI	GGNNCC	1 cut(s)	153
BspPI	GGATC	4 cut(s)	28, 119, 146, 159
BsrBI	CCGCTC	1 cut(s)	491
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	199
BssECI	CCNNGG	1 cut(s)	164
BssMI	GATC	6 cut(s)	33, 124, 151, 289, 321, 372
BssNI	GRCGYC	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	165
Bst4CI	ACNGT	2 cut(s)	160, 229
Bst6I	CTCTTC	1 cut(s)	418
BstACI	GRCGYC	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	489
BstDEI	CTNAG	2 cut(s)	82, 342
BstFNI	CGCG	1 cut(s)	467
BstHHI	GCGC	1 cut(s)	467
BstKTI	GATC	6 cut(s)	36, 127, 154, 292, 324, 375
BstMAI	GTCTC	3 cut(s)	59, 85, 376
BstMBI	GATC	6 cut(s)	33, 124, 151, 289, 321, 372
BstMWI	GCNNNNNNNGC	2 cut(s)	192, 201
BstNI	CCWGG	1 cut(s)	165
BstNSI	RCATGY	1 cut(s)	54
BstSCI	CCNGG	1 cut(s)	163
BstSFI	CTRYAG	1 cut(s)	63
BstUI	CGCG	1 cut(s)	467
BstX2I	RGATCY	3 cut(s)	124, 151, 289
BstXI	CCANNNNNNTGG	1 cut(s)	186
BstYI	RGATCY	3 cut(s)	124, 151, 289
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	3 cut(s)	108, 206, 234
Cac8I	GCNNGC	1 cut(s)	489
CfoI	GCGC	1 cut(s)	467
Cfr13I	GGNCC	1 cut(s)	220
CseI	GACGC	1 cut(s)	184
Csp6I	GTAC	2 cut(s)	266, 367
CspCI	CAANNNNNGTGG	2 cut(s)	379, 414
CviAII	CATG	2 cut(s)	51, 180
CviJI	RGCY	7 cut(s)	117, 147, 186, 341, 346, 364, 487
CviKI_1	RGCY	7 cut(s)	117, 147, 186, 341, 346, 364, 487
CviQI	GTAC	2 cut(s)	266, 367
DdeI	CTNAG	2 cut(s)	82, 342
DpnI	GATC	6 cut(s)	35, 126, 153, 291, 323, 374
DpnII	GATC	6 cut(s)	33, 124, 151, 289, 321, 372
Eam1104I	CTCTTC	1 cut(s)	418
EarI	CTCTTC	1 cut(s)	418
Eco47I	GGWCC	1 cut(s)	220
Eco88I	CYCGRG	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	163
Esp3I	CGTCTC	1 cut(s)	85
FaeI	CATG	2 cut(s)	54, 183
FaiI	YATR	9 cut(s)	26, 46, 52, 181, 216, 312, 320, 472, 523
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
FatI	CATG	2 cut(s)	50, 179
FauI	CCCGC	1 cut(s)	496
FbaI	TGATCA	1 cut(s)	321
FblI	GTMKAC	1 cut(s)	280
Fnu4HI	GCNGC	1 cut(s)	184
Fsp4HI	GCNGC	1 cut(s)	184
FspBI	CTAG	2 cut(s)	18, 526
GlaI	GCGC	1 cut(s)	466
GluI	GCNGC	1 cut(s)	184
GsaI	CCCAGC	2 cut(s)	151, 190
HgaI	GACGC	1 cut(s)	184
HhaI	GCGC	1 cut(s)	467
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	2 cut(s)	54, 183
Hin6I	GCGC	1 cut(s)	465
HinP1I	GCGC	1 cut(s)	465
Hpy166II	GTNNAC	2 cut(s)	232, 281
Hpy188I	TCNGA	4 cut(s)	85, 289, 432, 457
Hpy188III	TCNNGA	4 cut(s)	37, 223, 255, 293
Hpy8I	GTNNAC	2 cut(s)	232, 281
HpyAV	CCTTC	2 cut(s)	68, 437
HpyCH4III	ACNGT	2 cut(s)	160, 229
HpyCH4V	TGCA	3 cut(s)	50, 204, 422
HpyF10VI	GCNNNNNNNGC	2 cut(s)	192, 201
HpyF3I	CTNAG	2 cut(s)	82, 342
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	2 cut(s)	54, 183
HspAI	GCGC	1 cut(s)	465
Ksp22I	TGATCA	1 cut(s)	321
Kzo9I	GATC	6 cut(s)	33, 124, 151, 289, 321, 372
LmnI	GCTCC	1 cut(s)	496
LweI	GCATC	1 cut(s)	423
MaeI	CTAG	2 cut(s)	18, 526
MalI	GATC	6 cut(s)	35, 126, 153, 291, 323, 374
MbiI	CCGCTC	1 cut(s)	491
MboI	GATC	6 cut(s)	33, 124, 151, 289, 321, 372
MboII	GAAGA	2 cut(s)	131, 405
MfeI	CAATTG	1 cut(s)	417
MflI	RGATCY	3 cut(s)	124, 151, 289
MluCI	AATT	2 cut(s)	417, 500
MmeI	TCCRAC	1 cut(s)	179
MnlI	CCTC	3 cut(s)	79, 86, 421
MseI	TTAA	2 cut(s)	108, 395
MspA1I	CMGCKG	1 cut(s)	341
MspR9I	CCNGG	1 cut(s)	165
MunI	CAATTG	1 cut(s)	417
MvaI	CCWGG	1 cut(s)	165
MvnI	CGCG	1 cut(s)	467
MwoI	GCNNNNNNNGC	2 cut(s)	192, 201
NdeII	GATC	6 cut(s)	33, 124, 151, 289, 321, 372
NlaIII	CATG	2 cut(s)	54, 183
NlaIV	GGNNCC	1 cut(s)	153
NspI	RCATGY	1 cut(s)	54
PaeR7I	CTCGAG	1 cut(s)	293
PkrI	GCNGC	1 cut(s)	185
Psp6I	CCWGG	1 cut(s)	163
PspFI	CCCAGC	2 cut(s)	147, 186
PspGI	CCWGG	1 cut(s)	163
PspN4I	GGNNCC	1 cut(s)	153
PspPI	GGNCC	1 cut(s)	220
PsrI	GAACNNNNNNTAC	4 cut(s)	224, 256, 264, 296
PsuI	RGATCY	3 cut(s)	124, 151, 289
PvuII	CAGCTG	1 cut(s)	341
RsaI	GTAC	2 cut(s)	267, 368
RsaNI	GTAC	2 cut(s)	266, 367
SaqAI	TTAA	2 cut(s)	108, 395
SatI	GCNGC	1 cut(s)	184
Sau3AI	GATC	6 cut(s)	33, 124, 151, 289, 321, 372
Sau96I	GGNCC	1 cut(s)	220
ScrFI	CCNGG	1 cut(s)	165
SfaNI	GCATC	1 cut(s)	423
SfcI	CTRYAG	1 cut(s)	63
Sfr274I	CTCGAG	1 cut(s)	293
SinI	GGWCC	1 cut(s)	220
SlaI	CTCGAG	1 cut(s)	293
SmlI	CTYRAG	2 cut(s)	293, 379
SmoI	CTYRAG	2 cut(s)	293, 379
SpeI	ACTAGT	1 cut(s)	17
Sse9I	AATT	2 cut(s)	417, 500
SsiI	CCGC	2 cut(s)	183, 489
SspMI	CTAG	2 cut(s)	18, 526
StyD4I	CCNGG	1 cut(s)	163
TaaI	ACNGT	2 cut(s)	160, 229
TaqI	TCGA	1 cut(s)	294
TaqII	GACCGA	1 cut(s)	266
TasI	AATT	2 cut(s)	417, 500
TauI	GCSGC	1 cut(s)	186
Tru1I	TTAA	2 cut(s)	108, 395
Tru9I	TTAA	2 cut(s)	108, 395
TscAI	CASTG	3 cut(s)	108, 206, 234
TspRI	CASTG	3 cut(s)	108, 206, 234
VpaK11BI	GGWCC	1 cut(s)	220
XapI	RAATTY	1 cut(s)	500
XceI	RCATGY	1 cut(s)	54
XhoI	CTCGAG	1 cut(s)	293
XmiI	GTMKAC	1 cut(s)	280
XspI	CTAG	2 cut(s)	18, 526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.