AT4G13990

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000894
Physical Location & Seq
Forward (+)
8084162 .. 8086788
2627 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G13990.1

Sequence Viewer

Length: 1566 bp
ATGCGACCCAAGAATTATTCTCAGATGGAGAAACCCATCTCCATCACGACGGGGAAGTTTCGGACCAACAACAACAACAATCATAACAATGTCTGGTTCGTTGTTCCACTCTTCTTTATCCTCTGTTTCGTTCTCCTCTGTTTCGACTACTCTGCTCTCTTCACCGACACAGACGAAACCGCTTTCTCAATTCCCGACGTTACCCAGAAATCAACATCCTCTGAATTCACGAAAGATGACAACTTTTCTCGATTTCCCGACGACCCATCTCCTGATTCTTCCTGCTCCGGTCGGTATATTTACGTTCATGAACTTCCGTATAGATTCAATGGTGATTTGCTTGATAATTGCTTTAAGATTACTAGAGGAACCGAGAAAGATATTTGTCCTTACATCGAAAACTATGGTTTTGGTCCTGTCATTAAGAATTACGAGAATGTGTTGTTGAAACAAAGTTGGTTTACGACCAATCAGTTCATGCTCGAGGTGATATTCCACAACAAGATGATAAATTACAGATGTTTGACTAATGATTCGTCACTAGCGTCTGCGGTTTTCGTGCCGTTTTACGCAGGTCTTGATATGAGTAGGTATCTTTGGGGTTTCAACATTACGGTTAGAGATTCTTCGTCTCATGAGCTGATGGATTGGCTTGTGGTACAGAAAGAGTGGGGTCGAATGTCTGGTAGAGACCATTTCTTGGTTTCAGGAAGGATTGCTTGGGATTTCAGGAGACAGACTGATAACGAATCTGATTGGGGAAGCAAGCTTCGGTTCTTACCCGAGTCGCGGAACATGTCGATGTTGTCCATCGAATCGAGTTCTTGGAAGAATGATTACGCTATTCCGTATCCGACTTGTTTCCATCCAAGATCAGTGGATGAGATTGTGGAGTGGCAGGAGCTAATGAGGTCTCGAAAACGCGAGTATCTATTCACCTTTGCGGGTGCTCCAAGGCCTGAATATAAAGACTCGGTTCGAGGGAAGATTATAGATGAGTGTTTGGAGTCAAAGAAGCAATGTTACTTGCTAGACTGTAACTATGGGAATGTGAATTGTGACAACCCTGTCAATGTGATGAAGGTTTTCAGGAACTCGGTGTTTTGTCTTCAGCCACCGGGTGATTCTTACACTAGAAGGTCAATGTTTGATTCAATATTGGCAGGCTGCATTCCGGTGTTCTTCCATCCAGGGACAGCGTACGCTCAATACAAGTGGCATTTGCCCAAGAATCACTCGAGTTACTCGGTTTATCTACCGGTTAAGGATGTGAAGGAGTGGAATATCAAAATCAAGGAGAGGTTGATTGAGATTCCAGAGGAAAGAGTGGTGAGGTTGAGAGAAGAGGTTATAAGGTTGATACCGAAGGTTGTCTACGCTGATCCGAAGTACGGATCGGATGGGAGTGAAGATGCATTTGAGTTGGCTGTGAAGGGAATGTTGGAGAGGATTGAAGAAGTGAGAGAGATGATGAGACAAGGGAAAGATGGTAGTGATGGGTTTGATGATAGAGATGATTATAAGTATACTTTTTCTCCATATGAAGAACCTCAAGTTTTGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

521

Amino Acids

60.99

Weight (kDa)

5.66

Isoelectric Point (pI)

48.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 94 - 434 1.3e-90 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1352, 1521
AasI GACNNNNNNGTC 1 cut(s) 1067
Acc36I ACCTGC 1 cut(s) 563
AccB7I CCANNNNNTGG 1 cut(s) 700
AccI GTMKAC 2 cut(s) 1374, 1526
AccII CGCG 2 cut(s) 790, 924
AciI CCGC 4 cut(s) 180, 551, 790, 944
AclWI GGATC 2 cut(s) 1376, 1402
AcsI RAATTY 1 cut(s) 224
AcuI CTGAAG 1 cut(s) 1094
AdeI CACNNNGTG 1 cut(s) 1121
AfaI GTAC 3 cut(s) 660, 1202, 1391
AfiI CCNNNNNNNGG 3 cut(s) 700, 789, 1391
AflIII ACRYGT 1 cut(s) 795
AgeI ACCGGT 1 cut(s) 1258
AgsI TTSAA 5 cut(s) 328, 448, 607, 1155, 1454
AjnI CCWGG 1 cut(s) 1189
AjuI GAANNNNNNNTTGG 4 cut(s) 703, 735, 1424, 1456
AluBI AGCT 3 cut(s) 640, 769, 904
AluI AGCT 3 cut(s) 640, 769, 904
Alw21I GWGCWC 1 cut(s) 952
Alw26I GTCTC 5 cut(s) 636, 684, 727, 918, 1468
AlwI GGATC 2 cut(s) 1376, 1402
Ama87I CYCGRG 3 cut(s) 482, 782, 1237
AoxI GGCC 1 cut(s) 956
ApeKI GCWGC 1 cut(s) 1167
ApoI RAATTY 1 cut(s) 224
ArsI GACNNNNNNTTYG 2 cut(s) 517, 549
AsiGI ACCGGT 1 cut(s) 1258
Asp700I GAANNNNTTC 1 cut(s) 1085
AspS9I GGNCC 2 cut(s) 63, 413
AsuC2I CCSGG 1 cut(s) 1119
AsuHPI GGTGA 6 cut(s) 154, 344, 499, 928, 1133, 1342
AvaI CYCGRG 3 cut(s) 482, 782, 1237
AvaII GGWCC 2 cut(s) 63, 413
BaeI ACNNNNGTAYC 2 cut(s) 911, 944
BarI GAAGNNNNNNTAC 6 cut(s) 821, 853, 1007, 1039, 1358, 1390
BbsI GAAGAC 1 cut(s) 1100
Bbv12I GWGCWC 1 cut(s) 952
BbvI GCAGC 1 cut(s) 1154
BceAI ACGGC 1 cut(s) 547
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BciT130I CCWGG 1 cut(s) 1191
BciVI GTATCC 1 cut(s) 861
BcnI CCSGG 1 cut(s) 1119
BcoDI GTCTC 5 cut(s) 636, 684, 727, 918, 1468
BfaI CTAG 4 cut(s) 363, 542, 1031, 1134
BfuAI ACCTGC 1 cut(s) 563
BfuI GTATCC 1 cut(s) 861
BisI GCNGC 1 cut(s) 1168
BlsI GCNGC 1 cut(s) 1169
Bme1390I CCNGG 2 cut(s) 1119, 1191
Bme18I GGWCC 2 cut(s) 63, 413
BmeT110I CYCGRG 3 cut(s) 482, 782, 1237
BmgT120I GGNCC 2 cut(s) 63, 413
BmiI GGNNCC 1 cut(s) 370
BmrFI CCNGG 2 cut(s) 1119, 1191
BmsI GCATC 1 cut(s) 1402
BpiI GAAGAC 1 cut(s) 1100
BpuEI CTTGAG 1 cut(s) 1536
BpuMI CCSGG 1 cut(s) 1119
BsaI GGTCTC 2 cut(s) 684, 918
BsaJI CCNNGG 2 cut(s) 953, 1190
BsaWI WCCGGW 3 cut(s) 287, 1174, 1258
BsaXI ACNNNNNCTCC 2 cut(s) 1519, 1549
Bsc4I CCNNNNNNNGG 3 cut(s) 700, 789, 1391
Bse118I RCCGGY 1 cut(s) 1258
Bse3DI GCAATG 1 cut(s) 1025
BseBI CCWGG 1 cut(s) 1191
BseDI CCNNGG 2 cut(s) 953, 1190
BseGI GGATG 6 cut(s) 215, 865, 886, 1186, 1273, 1405
BseLI CCNNNNNNNGG 3 cut(s) 700, 789, 1391
BseMI GCAATG 1 cut(s) 1025
BseMII CTCAG 1 cut(s) 35
BseRI GAGGAG 1 cut(s) 125
BseXI GCAGC 1 cut(s) 1154
Bsh1236I CGCG 2 cut(s) 790, 924
Bsh1285I CGRYCG 1 cut(s) 292
BshFI GGCC 1 cut(s) 958
BshTI ACCGGT 1 cut(s) 1258
BsiEI CGRYCG 1 cut(s) 292
BsiHKAI GWGCWC 1 cut(s) 952
BsiHKCI CYCGRG 3 cut(s) 482, 782, 1237
BsiSI CCGG 4 cut(s) 288, 1118, 1175, 1259
BsiWI CGTACG 1 cut(s) 1200
BslFI GGGAC 1 cut(s) 1207
BslI CCNNNNNNNGG 3 cut(s) 700, 789, 1391
BsmAI GTCTC 5 cut(s) 636, 684, 727, 918, 1468
BsmBI CGTCTC 1 cut(s) 636
BsmFI GGGAC 1 cut(s) 1207
BsmI GAATGC 1 cut(s) 1170
BsnI GGCC 1 cut(s) 958
Bso31I GGTCTC 2 cut(s) 684, 918
BsoBI CYCGRG 3 cut(s) 482, 782, 1237
Bsp1286I GDGCHC 1 cut(s) 952
Bsp143I GATC 3 cut(s) 872, 1381, 1394
BspACI CCGC 4 cut(s) 180, 551, 790, 944
BspANI GGCC 1 cut(s) 958
BspCNI CTCAG 1 cut(s) 34
BspFNI CGCG 2 cut(s) 790, 924
BspHI TCATGA 2 cut(s) 307, 634
BspLI GGNNCC 1 cut(s) 370
BspMI ACCTGC 1 cut(s) 563
BspPI GGATC 2 cut(s) 1376, 1402
BspTNI GGTCTC 2 cut(s) 684, 918
BsrDI GCAATG 1 cut(s) 1025
BsrFI RCCGGY 1 cut(s) 1258
BssAI RCCGGY 1 cut(s) 1258
BssECI CCNNGG 2 cut(s) 953, 1190
BssMI GATC 3 cut(s) 872, 1381, 1394
BssNAI GTATAC 1 cut(s) 1527
BssT1I CCWWGG 1 cut(s) 953
Bst1107I GTATAC 1 cut(s) 1527
Bst2UI CCWGG 1 cut(s) 1191
Bst4CI ACNGT 2 cut(s) 616, 1037
Bst6I CTCTTC 3 cut(s) 116, 164, 1338
BstC8I GCNNGC 2 cut(s) 767, 1165
BstDEI CTNAG 1 cut(s) 21
BstF5I GGATG 6 cut(s) 215, 865, 886, 1186, 1273, 1405
BstFNI CGCG 2 cut(s) 790, 924
BstKTI GATC 3 cut(s) 875, 1384, 1397
BstMAI GTCTC 5 cut(s) 636, 684, 727, 918, 1468
BstMBI GATC 3 cut(s) 872, 1381, 1394
BstMCI CGRYCG 1 cut(s) 292
BstNI CCWGG 1 cut(s) 1191
BstNSI RCATGY 1 cut(s) 799
BstSCI CCNGG 2 cut(s) 1117, 1189
BstUI CGCG 2 cut(s) 790, 924
BstV1I GCAGC 1 cut(s) 1154
BstV2I GAAGAC 1 cut(s) 1100
BstZ17I GTATAC 1 cut(s) 1527
BsuI GTATCC 1 cut(s) 861
BsuRI GGCC 1 cut(s) 958
BtsCI GGATG 6 cut(s) 215, 865, 886, 1186, 1273, 1405
BtsIMutI CAGTG 1 cut(s) 882
BveI ACCTGC 1 cut(s) 563
Cac8I GCNNGC 2 cut(s) 767, 1165
CciI TCATGA 2 cut(s) 307, 634
Cfr10I RCCGGY 1 cut(s) 1258
Cfr13I GGNCC 2 cut(s) 63, 413
CseI GACGC 1 cut(s) 534
Csp6I GTAC 3 cut(s) 659, 1201, 1390
CspAI ACCGGT 1 cut(s) 1258
CspCI CAANNNNNGTGG 4 cut(s) 858, 893, 1196, 1231
CviAII CATG 4 cut(s) 308, 478, 635, 796
CviJI RGCY 9 cut(s) 640, 652, 769, 904, 958, 1114, 1167, 1427, 1562
CviKI_1 RGCY 9 cut(s) 640, 652, 769, 904, 958, 1114, 1167, 1427, 1562
CviQI GTAC 3 cut(s) 659, 1201, 1390
DdeI CTNAG 1 cut(s) 21
DpnI GATC 3 cut(s) 874, 1383, 1396
DpnII GATC 3 cut(s) 872, 1381, 1394
DraIII CACNNNGTG 1 cut(s) 1121
DrdI GACNNNNNNGTC 1 cut(s) 1067
DseDI GACNNNNNNGTC 1 cut(s) 1067
Eam1104I CTCTTC 3 cut(s) 116, 164, 1338
EarI CTCTTC 3 cut(s) 116, 164, 1338
Eco130I CCWWGG 1 cut(s) 953
Eco147I AGGCCT 1 cut(s) 958
Eco31I GGTCTC 2 cut(s) 684, 918
Eco47I GGWCC 2 cut(s) 63, 413
Eco57I CTGAAG 1 cut(s) 1094
Eco88I CYCGRG 3 cut(s) 482, 782, 1237
EcoRI GAATTC 1 cut(s) 224
EcoRII CCWGG 1 cut(s) 1189
EcoT14I CCWWGG 1 cut(s) 953
EcoT22I ATGCAT 1 cut(s) 1417
ErhI CCWWGG 1 cut(s) 953
Esp3I CGTCTC 1 cut(s) 636
FaeI CATG 4 cut(s) 311, 481, 638, 799
FalI AAGNNNNNCTT 2 cut(s) 703, 735
FaqI GGGAC 1 cut(s) 1207
FatI CATG 4 cut(s) 307, 477, 634, 795
FauI CCCGC 1 cut(s) 937
FauNDI CATATG 1 cut(s) 1540
FblI GTMKAC 2 cut(s) 1374, 1526
Fnu4HI GCNGC 1 cut(s) 1168
FokI GGATG 6 cut(s) 202, 852, 893, 1173, 1280, 1412
Fsp4HI GCNGC 1 cut(s) 1168
FspBI CTAG 4 cut(s) 363, 542, 1031, 1134
GluI GCNGC 1 cut(s) 1168
HaeIII GGCC 1 cut(s) 958
HapII CCGG 4 cut(s) 288, 1118, 1175, 1259
HgaI GACGC 1 cut(s) 534
Hin1II CATG 4 cut(s) 311, 481, 638, 799
HindIII AAGCTT 1 cut(s) 767
HpaII CCGG 4 cut(s) 288, 1118, 1175, 1259
HphI GGTGA 6 cut(s) 154, 344, 499, 928, 1133, 1342
Hpy166II GTNNAC 3 cut(s) 462, 1375, 1527
Hpy188I TCNGA 7 cut(s) 24, 63, 223, 754, 855, 1386, 1399
Hpy8I GTNNAC 3 cut(s) 462, 1375, 1527
Hpy99I CGWCG 3 cut(s) 52, 200, 263
HpyAV CCTTC 6 cut(s) 705, 1075, 1131, 1267, 1360, 1426
HpyCH4III ACNGT 2 cut(s) 616, 1037
HpyCH4IV ACGT 2 cut(s) 198, 303
HpyCH4V TGCA 2 cut(s) 1170, 1415
HpyF3I CTNAG 1 cut(s) 21
HpySE526I ACGT 2 cut(s) 198, 303
Hsp92II CATG 4 cut(s) 311, 481, 638, 799
Kzo9I GATC 3 cut(s) 872, 1381, 1394
LmnI GCTCC 3 cut(s) 290, 901, 955
Lsp1109I GCAGC 1 cut(s) 1154
LweI GCATC 1 cut(s) 1402
MaeI CTAG 4 cut(s) 363, 542, 1031, 1134
MaeII ACGT 2 cut(s) 198, 303
MaeIII GTNAC 6 cut(s) 199, 537, 1022, 1037, 1058, 1241
MalI GATC 3 cut(s) 874, 1383, 1396
MboI GATC 3 cut(s) 872, 1381, 1394
MhlI GDGCHC 1 cut(s) 952
MluCI AATT 7 cut(s) 13, 189, 224, 346, 427, 511, 1054
MlyI GAGTC 3 cut(s) 794, 965, 1016
MmeI TCCRAC 2 cut(s) 878, 1422
Mph1103I ATGCAT 1 cut(s) 1417
MroXI GAANNNNTTC 1 cut(s) 1085
MseI TTAA 4 cut(s) 354, 423, 1263, 1564
MslI CAYNNNNRTG 3 cut(s) 87, 800, 1175
MspI CCGG 4 cut(s) 288, 1118, 1175, 1259
MspR9I CCNGG 2 cut(s) 1119, 1191
Mva1269I GAATGC 1 cut(s) 1170
MvaI CCWGG 1 cut(s) 1191
MvnI CGCG 2 cut(s) 790, 924
NciI CCSGG 1 cut(s) 1119
NdeI CATATG 1 cut(s) 1540
NdeII GATC 3 cut(s) 872, 1381, 1394
NlaIII CATG 4 cut(s) 311, 481, 638, 799
NlaIV GGNNCC 1 cut(s) 370
NmuCI GTSAC 2 cut(s) 537, 1058
NsiI ATGCAT 1 cut(s) 1417
NspI RCATGY 1 cut(s) 799
PaeR7I CTCGAG 2 cut(s) 482, 1237
PagI TCATGA 2 cut(s) 307, 634
PceI AGGCCT 1 cut(s) 958
PciI ACATGT 1 cut(s) 795
PcsI WCGNNNNNNNCGW 1 cut(s) 542
PctI GAATGC 1 cut(s) 1170
PdmI GAANNNNTTC 1 cut(s) 1085
Pfl23II CGTACG 1 cut(s) 1200
PflMI CCANNNNNTGG 1 cut(s) 700
PinAI ACCGGT 1 cut(s) 1258
PkrI GCNGC 1 cut(s) 1169
PleI GAGTC 3 cut(s) 793, 965, 1015
PpsI GAGTC 3 cut(s) 793, 965, 1015
PscI ACATGT 1 cut(s) 795
PsiI TTATAA 2 cut(s) 1352, 1521
Psp6I CCWGG 1 cut(s) 1189
PspGI CCWGG 1 cut(s) 1189
PspLI CGTACG 1 cut(s) 1200
PspN4I GGNNCC 1 cut(s) 370
PspPI GGNCC 2 cut(s) 63, 413
PspXI VCTCGAGB 2 cut(s) 482, 1237
RsaI GTAC 3 cut(s) 660, 1202, 1391
RsaNI GTAC 3 cut(s) 659, 1201, 1390
RseI CAYNNNNRTG 3 cut(s) 87, 800, 1175
SaqAI TTAA 4 cut(s) 354, 423, 1263, 1564
SatI GCNGC 1 cut(s) 1168
Sau3AI GATC 3 cut(s) 872, 1381, 1394
Sau96I GGNCC 2 cut(s) 63, 413
SchI GAGTC 3 cut(s) 794, 965, 1016
ScrFI CCNGG 2 cut(s) 1119, 1191
SduI GDGCHC 1 cut(s) 952
SfaNI GCATC 1 cut(s) 1402
Sfr274I CTCGAG 2 cut(s) 482, 1237
SinI GGWCC 2 cut(s) 63, 413
SlaI CTCGAG 2 cut(s) 482, 1237
SmiMI CAYNNNNRTG 3 cut(s) 87, 800, 1175
SmlI CTYRAG 3 cut(s) 482, 1237, 1551
SmoI CTYRAG 3 cut(s) 482, 1237, 1551
Sse9I AATT 7 cut(s) 13, 189, 224, 346, 427, 511, 1054
SseBI AGGCCT 1 cut(s) 958
SsiI CCGC 4 cut(s) 180, 551, 790, 944
SspI AATATT 1 cut(s) 1158
SspMI CTAG 4 cut(s) 363, 542, 1031, 1134
StuI AGGCCT 1 cut(s) 958
StyD4I CCNGG 2 cut(s) 1117, 1189
StyI CCWWGG 1 cut(s) 953
TaaI ACNGT 2 cut(s) 616, 1037
TaiI ACGT 2 cut(s) 201, 306
TasI AATT 7 cut(s) 13, 189, 224, 346, 427, 511, 1054
Tru1I TTAA 4 cut(s) 354, 423, 1263, 1564
Tru9I TTAA 4 cut(s) 354, 423, 1263, 1564
TscAI CASTG 1 cut(s) 882
TseFI GTSAC 2 cut(s) 537, 1058
TseI GCWGC 1 cut(s) 1167
Tsp45I GTSAC 2 cut(s) 537, 1058
TspDTI ATGAA 5 cut(s) 296, 324, 466, 1094, 1557
TspGWI ACGGA 3 cut(s) 306, 837, 1407
TspRI CASTG 1 cut(s) 882
Van91I CCANNNNNTGG 1 cut(s) 700
VpaK11BI GGWCC 2 cut(s) 63, 413
XapI RAATTY 1 cut(s) 224
XceI RCATGY 1 cut(s) 799
XhoI CTCGAG 2 cut(s) 482, 1237
XmiI GTMKAC 2 cut(s) 1374, 1526
XmnI GAANNNNTTC 1 cut(s) 1085
XspI CTAG 4 cut(s) 363, 542, 1031, 1134
Zsp2I ATGCAT 1 cut(s) 1417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.