Rroxscaffold_5G00357290

Xyloglucan galactosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000894
Physical Location & Seq
Forward (+)
36888063 .. 36889544
1482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00357290.1

Sequence Viewer

Length: 1482 bp
ATGGAGAATCCACTCATAGCTAAGTGCTCTCAGGACCTCTGGTTTGGTATACTCATCTCCTTCTTTTTTGGTTTTGTATTGCTTTCATTTGATTATTCAACCTTCTTGGGTGTCAACAATGGTGCCAGTCTTTTAGTGAATAAACAAGGTCACCCAGTTGGGTTTGTGAAGAACCAAACTTTGATTACTACCCAGTCTAACCCAGATTCTTGTTCTGGTCGTTATGTTTATATACATGATGATCTTCCTTCCAAGTTCAACTCTGATTTGCTCAAGAACTGTAGGCTTCTTACTAGAGGGACTGACAAGCCCAATTTGTGTCCTTACTTTGAGAATTCGGGTTTTGGTCCTGAAATTGAAAACACTGAAGGGGTTTTAGCCAACAAGAGTTGGTTCTCCACAAACCAGTTCACTTTGGAAGTCATATTCCACAACAAGATGAAGCAGTATAAGTGTTTGACAAAAAACTCATCTCTGGCTTCAGCCATTTATGTGCCATTCTATGCTGGTCTTGATGCTAGTCTCCATTTGTGGGATTCCAATCTCACGGTGAGAGACGCTTCGGCTAGAGATCTAAACGGTTGGCTTTCGAAGAGGCCCGAATGGAAGACGATGTGGGGAAGAGACCATTTCTTGGTTGCAGGGAGGATTTCATGGGATTTCAGGAGGCAAACGGATGAGGTTTCGGATTGGGGGAGTAAACTCAGATTCTTGCCGGAATCGATGAACATGAGTATGTTGTCAGTTGAAGGAAGCTCATGGAGAAATGACTATGCTATTCCATACCCAACAAACTTTCATCCAGCAAAAGATAGCGATGTGGTTCAATGGCAGAACAGAATGCGAAAACTAGACAGGCCTTACTTGTTCACTTTTGTTGGTGCTCCAAGGCCTGACCAGCAAAACTCGATTCGGGGGAAGATTATTGATCAGTGCCTAGCTTCAAGTGTTTGCAAGTTGATAGATTGCAGTTCTGGTGGGATTAAGTGTGACAACCCGGCTAGTGTTATGAGGGTGTTTCAGAGCTCAGTTTATTGCTTGCAGCCTACAGGGGATTCATACACTAGGAAATCAGCTTTTGACTCGATTCTGGCGGGTTGTATTCCGGTTTTCTTTCATCCGGGTACTGCTTATTCGCAATATTTATGGCACTTACCTAGGAATCATACCAAGTATTCGGTGTTTATTCCGGTGAGGTATGTAGAAGATTTGAAAGAAGGCCTCATTGAGAGAACCTTGGTTGGAATTTCAAAGGAGAAAGAATTGGAAATGAGAGAAGAGGTTATAAGGCTAATACCGAAGCTGGTGTATGCAGATCCCATGTCAAGATTAGAGACCGAAGATGCATTTGATTTATCTGTCAAGGGAATTCTTGAGACGATAGAGAATGTTAGGAATGTGATTAGAGAAGGAAGGGATCCTAGCATGGGTTTTGCAGATGAGGATAGTTACAAGTACACATTTCCAAAGACATTAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

493

Amino Acids

56.32

Weight (kDa)

6.77

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 70 - 406 1.4e-82 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1286
AccB1I GGYRCC 1 cut(s) 122
AccB7I CCANNNNNTGG 1 cut(s) 634
AccI GTMKAC 1 cut(s) 49
AciI CCGC 1 cut(s) 1094
AclWI GGATC 3 cut(s) 1310, 1412, 1425
AcsI RAATTY 3 cut(s) 334, 1245, 1368
AcuI CTGAAG 2 cut(s) 387, 465
AfaI GTAC 2 cut(s) 1126, 1457
AfiI CCNNNNNNNGG 3 cut(s) 532, 634, 1427
AgsI TTSAA 8 cut(s) 99, 259, 359, 749, 827, 945, 1213, 1251
AluBI AGCT 6 cut(s) 20, 756, 941, 1026, 1076, 1303
AluI AGCT 6 cut(s) 20, 756, 941, 1026, 1076, 1303
Alw21I GWGCWC 3 cut(s) 29, 886, 1028
Alw26I GTCTC 5 cut(s) 527, 549, 618, 1328, 1370
AlwI GGATC 3 cut(s) 1310, 1412, 1425
AoxI GGCC 4 cut(s) 596, 857, 890, 1219
ApeKI GCWGC 1 cut(s) 1042
ApoI RAATTY 3 cut(s) 334, 1245, 1368
ArsI GACNNNNNNTTYG 2 cut(s) 26, 58
AspA2I CCTAGG 1 cut(s) 1157
AspS9I GGNCC 3 cut(s) 34, 347, 597
AsuC2I CCSGG 2 cut(s) 998, 1122
AsuHPI GGTGA 3 cut(s) 143, 562, 1204
AsuII TTCGAA 1 cut(s) 590
AvaII GGWCC 2 cut(s) 34, 347
AvrII CCTAGG 1 cut(s) 1157
BamHI GGATCC 1 cut(s) 1417
BanI GGYRCC 1 cut(s) 122
BanII GRGCYC 1 cut(s) 1028
BbsI GAAGAC 1 cut(s) 614
Bbv12I GWGCWC 3 cut(s) 29, 886, 1028
BbvI GCAGC 1 cut(s) 1054
BclI TGATCA 1 cut(s) 928
BcnI CCSGG 2 cut(s) 998, 1122
BcoDI GTCTC 5 cut(s) 527, 549, 618, 1328, 1370
BfaI CTAG 9 cut(s) 294, 519, 567, 851, 938, 1002, 1065, 1158, 1422
BfmI CTRYAG 2 cut(s) 280, 1047
BglII AGATCT 1 cut(s) 571
BisI GCNGC 1 cut(s) 1043
BlnI CCTAGG 1 cut(s) 1157
BlsI GCNGC 1 cut(s) 1044
Bme1390I CCNGG 2 cut(s) 998, 1122
Bme18I GGWCC 2 cut(s) 34, 347
BmgT120I GGNCC 3 cut(s) 34, 347, 597
BmiI GGNNCC 2 cut(s) 124, 1419
BmrFI CCNGG 2 cut(s) 998, 1122
BmrI ACTGGG 2 cut(s) 149, 187
BmsI GCATC 2 cut(s) 505, 1333
BmuI ACTGGG 2 cut(s) 149, 187
BpiI GAAGAC 1 cut(s) 614
Bpu14I TTCGAA 1 cut(s) 590
BpuEI CTTGAG 2 cut(s) 257, 1394
BpuMI CCSGG 2 cut(s) 998, 1122
Bsa29I ATCGAT 1 cut(s) 722
BsaBI GATNNNNATC 1 cut(s) 540
BsaI GGTCTC 2 cut(s) 618, 1328
BsaJI CCNNGG 3 cut(s) 887, 1157, 1236
BsaWI WCCGGW 2 cut(s) 1105, 1189
Bsc4I CCNNNNNNNGG 3 cut(s) 532, 634, 1427
Bse1I ACTGG 4 cut(s) 126, 155, 193, 406
Bse8I GATNNNNATC 1 cut(s) 540
BseCI ATCGAT 1 cut(s) 722
BseDI CCNNGG 3 cut(s) 887, 1157, 1236
BseGI GGATG 3 cut(s) 682, 799, 1117
BseJI GATNNNNATC 1 cut(s) 540
BseLI CCNNNNNNNGG 3 cut(s) 532, 634, 1427
BseMII CTCAG 3 cut(s) 44, 718, 1041
BseNI ACTGG 4 cut(s) 126, 155, 193, 406
BseXI GCAGC 1 cut(s) 1054
BshFI GGCC 4 cut(s) 598, 859, 892, 1221
BshNI GGYRCC 1 cut(s) 122
BshVI ATCGAT 1 cut(s) 722
BsiHKAI GWGCWC 3 cut(s) 29, 886, 1028
BsiSI CCGG 5 cut(s) 716, 998, 1106, 1121, 1190
BslFI GGGAC 1 cut(s) 313
BslI CCNNNNNNNGG 3 cut(s) 532, 634, 1427
BsmAI GTCTC 5 cut(s) 527, 549, 618, 1328, 1370
BsmBI CGTCTC 2 cut(s) 549, 1370
BsmFI GGGAC 1 cut(s) 313
BsmI GAATGC 1 cut(s) 846
BsnI GGCC 4 cut(s) 598, 859, 892, 1221
Bso31I GGTCTC 2 cut(s) 618, 1328
Bsp119I TTCGAA 1 cut(s) 590
Bsp1286I GDGCHC 3 cut(s) 29, 886, 1028
Bsp143I GATC 5 cut(s) 241, 571, 928, 1315, 1417
BspACI CCGC 1 cut(s) 1094
BspANI GGCC 4 cut(s) 598, 859, 892, 1221
BspCNI CTCAG 3 cut(s) 43, 717, 1040
BspDI ATCGAT 1 cut(s) 722
BspLI GGNNCC 2 cut(s) 124, 1419
BspPI GGATC 3 cut(s) 1310, 1412, 1425
BspT104I TTCGAA 1 cut(s) 590
BspT107I GGYRCC 1 cut(s) 122
BspTNI GGTCTC 2 cut(s) 618, 1328
BsrI ACTGG 4 cut(s) 126, 155, 193, 406
BssECI CCNNGG 3 cut(s) 887, 1157, 1236
BssMI GATC 5 cut(s) 241, 571, 928, 1315, 1417
BssNAI GTATAC 1 cut(s) 50
BssT1I CCWWGG 3 cut(s) 887, 1157, 1236
Bst1107I GTATAC 1 cut(s) 50
Bst4CI ACNGT 3 cut(s) 281, 550, 581
Bst6I CTCTTC 3 cut(s) 587, 616, 1272
BstBI TTCGAA 1 cut(s) 590
BstC8I GCNNGC 1 cut(s) 1040
BstDEI CTNAG 4 cut(s) 21, 30, 704, 1027
BstEII GGTNACC 1 cut(s) 149
BstF5I GGATG 3 cut(s) 682, 799, 1117
BstKTI GATC 5 cut(s) 244, 574, 931, 1318, 1420
BstMAI GTCTC 5 cut(s) 527, 549, 618, 1328, 1370
BstMBI GATC 5 cut(s) 241, 571, 928, 1315, 1417
BstMWI GCNNNNNNNGC 1 cut(s) 898
BstPI GGTNACC 1 cut(s) 149
BstSCI CCNGG 2 cut(s) 996, 1120
BstSFI CTRYAG 2 cut(s) 280, 1047
BstV1I GCAGC 1 cut(s) 1054
BstV2I GAAGAC 1 cut(s) 614
BstX2I RGATCY 3 cut(s) 571, 1315, 1417
BstYI RGATCY 3 cut(s) 571, 1315, 1417
BstZ17I GTATAC 1 cut(s) 50
Bsu15I ATCGAT 1 cut(s) 722
BsuRI GGCC 4 cut(s) 598, 859, 892, 1221
BsuTUI ATCGAT 1 cut(s) 722
BtgZI GCGATG 1 cut(s) 831
BtsCI GGATG 3 cut(s) 682, 799, 1117
BtsIMutI CAGTG 2 cut(s) 363, 938
Cac8I GCNNGC 1 cut(s) 1040
Cfr13I GGNCC 3 cut(s) 34, 347, 597
ClaI ATCGAT 1 cut(s) 722
CseI GACGC 1 cut(s) 566
Csp6I GTAC 2 cut(s) 1125, 1456
CviAII CATG 6 cut(s) 236, 654, 730, 759, 1321, 1426
CviQI GTAC 2 cut(s) 1125, 1456
DdeI CTNAG 4 cut(s) 21, 30, 704, 1027
DpnI GATC 5 cut(s) 243, 573, 930, 1317, 1419
DpnII GATC 5 cut(s) 241, 571, 928, 1315, 1417
Eam1104I CTCTTC 3 cut(s) 587, 616, 1272
EarI CTCTTC 3 cut(s) 587, 616, 1272
Ecl136II GAGCTC 1 cut(s) 1026
Eco130I CCWWGG 3 cut(s) 887, 1157, 1236
Eco147I AGGCCT 3 cut(s) 859, 892, 1221
Eco24I GRGCYC 1 cut(s) 1028
Eco31I GGTCTC 2 cut(s) 618, 1328
Eco47I GGWCC 2 cut(s) 34, 347
Eco53kI GAGCTC 1 cut(s) 1026
Eco57I CTGAAG 2 cut(s) 387, 465
Eco91I GGTNACC 1 cut(s) 149
EcoICRI GAGCTC 1 cut(s) 1026
EcoO109I RGGNCCY 1 cut(s) 34
EcoO65I GGTNACC 1 cut(s) 149
EcoRI GAATTC 2 cut(s) 334, 1368
EcoT14I CCWWGG 3 cut(s) 887, 1157, 1236
EcoT22I ATGCAT 1 cut(s) 1348
EcoT38I GRGCYC 1 cut(s) 1028
ErhI CCWWGG 3 cut(s) 887, 1157, 1236
Esp3I CGTCTC 2 cut(s) 549, 1370
FaeI CATG 6 cut(s) 239, 657, 733, 762, 1324, 1429
FaqI GGGAC 1 cut(s) 313
FatI CATG 6 cut(s) 235, 653, 729, 758, 1320, 1425
FauI CCCGC 1 cut(s) 1087
FbaI TGATCA 1 cut(s) 928
FblI GTMKAC 1 cut(s) 49
Fnu4HI GCNGC 1 cut(s) 1043
FokI GGATG 3 cut(s) 689, 786, 1104
FriOI GRGCYC 1 cut(s) 1028
Fsp4HI GCNGC 1 cut(s) 1043
FspBI CTAG 9 cut(s) 294, 519, 567, 851, 938, 1002, 1065, 1158, 1422
GluI GCNGC 1 cut(s) 1043
HaeIII GGCC 4 cut(s) 598, 859, 892, 1221
HapII CCGG 5 cut(s) 716, 998, 1106, 1121, 1190
HgaI GACGC 1 cut(s) 566
Hin1II CATG 6 cut(s) 239, 657, 733, 762, 1324, 1429
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HpaII CCGG 5 cut(s) 716, 998, 1106, 1121, 1190
HphI GGTGA 3 cut(s) 143, 562, 1204
Hpy166II GTNNAC 6 cut(s) 50, 115, 411, 701, 870, 1458
Hpy188I TCNGA 4 cut(s) 265, 688, 707, 1023
Hpy188III TCNNGA 7 cut(s) 32, 274, 350, 512, 664, 1326, 1373
Hpy8I GTNNAC 6 cut(s) 50, 115, 411, 701, 870, 1458
HpyAV CCTTC 8 cut(s) 70, 112, 258, 362, 743, 1211, 1403, 1407
HpyCH4III ACNGT 3 cut(s) 281, 550, 581
HpyCH4V TGCA 7 cut(s) 641, 954, 969, 1042, 1313, 1346, 1436
HpyF10VI GCNNNNNNNGC 1 cut(s) 898
HpyF3I CTNAG 4 cut(s) 21, 30, 704, 1027
Hsp92II CATG 6 cut(s) 239, 657, 733, 762, 1324, 1429
Ksp22I TGATCA 1 cut(s) 928
Kzo9I GATC 5 cut(s) 241, 571, 928, 1315, 1417
LmnI GCTCC 1 cut(s) 889
Lsp1109I GCAGC 1 cut(s) 1054
LweI GCATC 2 cut(s) 505, 1333
MaeI CTAG 9 cut(s) 294, 519, 567, 851, 938, 1002, 1065, 1158, 1422
MaeIII GTNAC 3 cut(s) 149, 989, 1448
MalI GATC 5 cut(s) 243, 573, 930, 1317, 1419
MboI GATC 5 cut(s) 241, 571, 928, 1315, 1417
MboII GAAGA 9 cut(s) 181, 236, 604, 619, 633, 931, 1217, 1289, 1352
MflI RGATCY 3 cut(s) 571, 1315, 1417
MhlI GDGCHC 3 cut(s) 29, 886, 1028
MluCI AATT 6 cut(s) 313, 334, 354, 1245, 1262, 1368
MlyI GAGTC 1 cut(s) 1076
MmeI TCCRAC 1 cut(s) 1222
Mph1103I ATGCAT 1 cut(s) 1348
MseI TTAA 1 cut(s) 984
MslI CAYNNNNRTG 2 cut(s) 491, 734
MspI CCGG 5 cut(s) 716, 998, 1106, 1121, 1190
MspR9I CCNGG 2 cut(s) 998, 1122
Mva1269I GAATGC 1 cut(s) 846
MwoI GCNNNNNNNGC 1 cut(s) 898
NciI CCSGG 2 cut(s) 998, 1122
NdeII GATC 5 cut(s) 241, 571, 928, 1315, 1417
NlaIII CATG 6 cut(s) 239, 657, 733, 762, 1324, 1429
NlaIV GGNNCC 2 cut(s) 124, 1419
NmuCI GTSAC 2 cut(s) 149, 989
NsiI ATGCAT 1 cut(s) 1348
NspV TTCGAA 1 cut(s) 590
PceI AGGCCT 3 cut(s) 859, 892, 1221
PctI GAATGC 1 cut(s) 846
PfeI GAWTC 9 cut(s) 7, 206, 536, 708, 719, 910, 1055, 1087, 1162
PflMI CCANNNNNTGG 1 cut(s) 634
PkrI GCNGC 1 cut(s) 1044
PleI GAGTC 1 cut(s) 1076
PpsI GAGTC 1 cut(s) 1076
PpuMI RGGWCCY 1 cut(s) 34
PsiI TTATAA 1 cut(s) 1286
Psp124BI GAGCTC 1 cut(s) 1028
Psp5II RGGWCCY 1 cut(s) 34
PspEI GGTNACC 1 cut(s) 149
PspN4I GGNNCC 2 cut(s) 124, 1419
PspPI GGNCC 3 cut(s) 34, 347, 597
PspPPI RGGWCCY 1 cut(s) 34
PsuI RGATCY 3 cut(s) 571, 1315, 1417
RsaI GTAC 2 cut(s) 1126, 1457
RsaNI GTAC 2 cut(s) 1125, 1456
RseI CAYNNNNRTG 2 cut(s) 491, 734
SacI GAGCTC 1 cut(s) 1028
SaqAI TTAA 1 cut(s) 984
SatI GCNGC 1 cut(s) 1043
Sau3AI GATC 5 cut(s) 241, 571, 928, 1315, 1417
Sau96I GGNCC 3 cut(s) 34, 347, 597
SchI GAGTC 1 cut(s) 1076
ScrFI CCNGG 2 cut(s) 998, 1122
SduI GDGCHC 3 cut(s) 29, 886, 1028
SfaNI GCATC 2 cut(s) 505, 1333
SfcI CTRYAG 2 cut(s) 280, 1047
SfuI TTCGAA 1 cut(s) 590
SinI GGWCC 2 cut(s) 34, 347
SmiMI CAYNNNNRTG 2 cut(s) 491, 734
SmlI CTYRAG 2 cut(s) 272, 1373
SmoI CTYRAG 2 cut(s) 272, 1373
Sse9I AATT 6 cut(s) 313, 334, 354, 1245, 1262, 1368
SseBI AGGCCT 3 cut(s) 859, 892, 1221
SsiI CCGC 1 cut(s) 1094
SspI AATATT 1 cut(s) 1142
SspMI CTAG 9 cut(s) 294, 519, 567, 851, 938, 1002, 1065, 1158, 1422
SstI GAGCTC 1 cut(s) 1028
StuI AGGCCT 3 cut(s) 859, 892, 1221
StyD4I CCNGG 2 cut(s) 996, 1120
StyI CCWWGG 3 cut(s) 887, 1157, 1236
TaaI ACNGT 3 cut(s) 281, 550, 581
TaqI TCGA 4 cut(s) 590, 722, 908, 1085
TaqII GACCGA 1 cut(s) 1352
TasI AATT 6 cut(s) 313, 334, 354, 1245, 1262, 1368
TatI WGTACW 1 cut(s) 1455
TfiI GAWTC 9 cut(s) 7, 206, 536, 708, 719, 910, 1055, 1087, 1162
Tru1I TTAA 1 cut(s) 984
Tru9I TTAA 1 cut(s) 984
TscAI CASTG 2 cut(s) 370, 938
TseFI GTSAC 2 cut(s) 149, 989
TseI GCWGC 1 cut(s) 1042
Tsp45I GTSAC 2 cut(s) 149, 989
TspDTI ATGAA 7 cut(s) 75, 455, 642, 740, 788, 1047, 1106
TspGWI ACGGA 1 cut(s) 689
TspRI CASTG 2 cut(s) 370, 938
Van91I CCANNNNNTGG 1 cut(s) 634
VpaK11BI GGWCC 2 cut(s) 34, 347
XapI RAATTY 3 cut(s) 334, 1245, 1368
XmaJI CCTAGG 1 cut(s) 1157
XmiI GTMKAC 1 cut(s) 49
XspI CTAG 9 cut(s) 294, 519, 567, 851, 938, 1002, 1065, 1158, 1422
Zsp2I ATGCAT 1 cut(s) 1348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.