Prupe.1G165700_v2.0.a1

Xyloglucan galactosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000894
Physical Location & Seq
Forward (+)
13443409 .. 13445251
1843 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G165700.1

Sequence Viewer

Length: 1470 bp
ATGGAGAAACTTCTAGCAGGAAAATGCTCTCAAGAACTCTGGTTTGGCATACTCATCTCCTTTGCTATGTGCTTTGTTTTTCTCTGCTTTGATTTTTCAACTTTCTGGGGCGTCAACAATGAGGCCAATCTTTTGGTCACCAAAAAAGTTGATCCAATTGGCATTTTGAATTTTAACCAAACCAGAGACTCATGCTCTGATCGTTACATTTACATCCATGAGGGTCTTCCTAGCAGATTCAACTATGATTTCCTCAACAACTGTGAGTCTCTGAGTGCAGGAACCAGTATCAGCAACATCCCAAGTATGTGTCCTCACCTTGTGAATTTAGGTCTTGGCCCTGAAATTAACAGCTCTGAAGGGGTTTTGTCAAACAAGAGCTGGTTCAAAACAAATCCCTACTTGTTAGAAGTCATATTCCACAACAGGATGAAGAACTATGAGTGTTTGACAAAAAACTTCACTCTGGCTTCAGCCATTTATGTGCCATTTTATCCCAGCATGGATGTTGGTGTCCATCTGTGGGATTCGAACCTCACTATCAGAGACTCTTCGGCGAAACATTTCGCGAAGTGGCTTTCGGGGCAACCCGAATGGTCGAAAATGTGGGGGAGAGACCATTTCTTTGCTTCTGGGAGGATTGCTTGGGATTTCAGGAGGGAAAGAGACAATGGCTCTGCTTGGGGTAGTAAACTCAGGTTCTTGCCTGAGTCCATGAACATGACTATGTTGACATTGGAAGGAAGCAGGTGGAAAAACGACATTGCAATTCCATACCCAACGAACTTTCATCCGGCAAAGGACAGTGAGGTTGTTCAATGGCAGAACAGAGTTAGAGAACAAGAAAGGCCTTATTTGTTCACTTTTGCTGGAGCACCAAGGCCTAACCAGAACGGTTCTATCCGGGGCAAACTTATTGATCATTGCCAAGCTTCAACTAAGTGCAAGTTTCTACATTGCACTGAAAAAAAATGTGGCAATCCCGTTACTGTTATGAGGGTGTTTCAGAGCTCAGTTTATTGCTTGCAGCCTGAAGGAGATTCATACACTCGGAGATCAGCTTTCGACGCTTTTCTGGCCGGTTGTATTCCAGTTTTCTTTCATCCGGCTACTGCCTATACTCAATATTTATGGTATTTACCAAAAGATCATACCAAGTATTCGGTGTTTATTCCGGTGAGGGATGTAAAAGATTTGAAAGAAGGCCAAATTGAGAATGTGTTGCTTGGAATTTCAAAGGATCAAGAGGCGGCCATGAGAGAGGAGGTTATAAGGCTAATACCAAAGCTGGTATATGCAGATCCTAGGTCAAGATTAGAGACTCAAGATGCATTTGATATAGCTGTGCAGGGAATTCTTGAGAGAATAGAGAATGTGAGAAAGGTGAATAGAGAGGGGAGAGATCCTAGCATTGGTTTTGCAGATGAGGATAATGGTAAGTTCAAATTTCCAGACACAATGGATTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

490

Amino Acids

56.15

Weight (kDa)

7.52

Isoelectric Point (pI)

38.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1271
AarI CACCTGC 1 cut(s) 738
Acc36I ACCTGC 1 cut(s) 738
AccII CGCG 1 cut(s) 569
AciI CCGC 1 cut(s) 1250
AclWI GGATC 4 cut(s) 146, 1248, 1295, 1397
AcoI YGGCCR 2 cut(s) 1077, 1251
AcsI RAATTY 5 cut(s) 169, 325, 1230, 1353, 1445
AcuI CTGAAG 3 cut(s) 378, 456, 1053
AcyI GRCGYC 1 cut(s) 111
AdeI CACNNNGTG 1 cut(s) 322
AfiI CCNNNNNNNGG 2 cut(s) 523, 1412
AgsI TTSAA 9 cut(s) 99, 169, 241, 388, 818, 936, 1198, 1236, 1444
AjuI GAANNNNNNNTTGG 2 cut(s) 27, 59
AluBI AGCT 7 cut(s) 354, 381, 932, 1011, 1061, 1288, 1343
AluI AGCT 7 cut(s) 354, 381, 932, 1011, 1061, 1288, 1343
Alw21I GWGCWC 2 cut(s) 877, 1013
Alw26I GTCTC 6 cut(s) 180, 273, 540, 609, 660, 1313
AlwI GGATC 4 cut(s) 146, 1248, 1295, 1397
AoxI GGCC 7 cut(s) 123, 337, 848, 881, 1077, 1204, 1251
ApeKI GCWGC 1 cut(s) 1027
ApoI RAATTY 5 cut(s) 169, 325, 1230, 1353, 1445
ArsI GACNNNNNNTTYG 2 cut(s) 608, 640
Asp700I GAANNNNTTC 1 cut(s) 563
AspA2I CCTAGG 1 cut(s) 1304
AspS9I GGNCC 1 cut(s) 338
AsuC2I CCSGG 1 cut(s) 905
AsuHPI GGTGA 4 cut(s) 130, 308, 1189, 1396
AsuII TTCGAA 1 cut(s) 530
AvrII CCTAGG 1 cut(s) 1304
BanII GRGCYC 1 cut(s) 1013
BbsI GAAGAC 1 cut(s) 218
Bbv12I GWGCWC 2 cut(s) 877, 1013
BbvI GCAGC 1 cut(s) 1039
BccI CCATC 1 cut(s) 525
BclI TGATCA 1 cut(s) 919
BcnI CCSGG 1 cut(s) 905
BcoDI GTCTC 6 cut(s) 180, 273, 540, 609, 660, 1313
BfaI CTAG 4 cut(s) 14, 231, 1305, 1407
BfuAI ACCTGC 1 cut(s) 738
BisI GCNGC 2 cut(s) 1028, 1251
BlnI CCTAGG 1 cut(s) 1304
BlsI GCNGC 2 cut(s) 1029, 1252
Bme1390I CCNGG 1 cut(s) 905
BmgT120I GGNCC 1 cut(s) 338
BmiI GGNNCC 1 cut(s) 283
BmrFI CCNGG 1 cut(s) 905
BmsI GCATC 1 cut(s) 1318
BpiI GAAGAC 1 cut(s) 218
BpmI CTGGAG 1 cut(s) 891
Bpu14I TTCGAA 1 cut(s) 530
BpuEI CTTGAG 3 cut(s) 15, 1308, 1379
BpuMI CCSGG 1 cut(s) 905
BsaHI GRCGYC 1 cut(s) 111
BsaI GGTCTC 1 cut(s) 609
BsaJI CCNNGG 3 cut(s) 878, 904, 1304
BsaWI WCCGGW 1 cut(s) 1174
Bsc4I CCNNNNNNNGG 2 cut(s) 523, 1412
Bse118I RCCGGY 1 cut(s) 1079
Bse1I ACTGG 2 cut(s) 285, 1091
Bse3DI GCAATG 3 cut(s) 762, 922, 955
BseDI CCNNGG 3 cut(s) 878, 904, 1304
BseGI GGATG 7 cut(s) 213, 297, 435, 511, 790, 1102, 1189
BseLI CCNNNNNNNGG 2 cut(s) 523, 1412
BseMI GCAATG 3 cut(s) 762, 922, 955
BseMII CTCAG 4 cut(s) 263, 699, 709, 1026
BseNI ACTGG 2 cut(s) 285, 1091
BseRI GAGGAG 1 cut(s) 1277
BseXI GCAGC 1 cut(s) 1039
BseYI CCCAGC 1 cut(s) 497
BsgI GTGCAG 2 cut(s) 297, 1367
Bsh1236I CGCG 1 cut(s) 569
BshFI GGCC 7 cut(s) 125, 339, 850, 883, 1079, 1206, 1253
BsiHKAI GWGCWC 2 cut(s) 877, 1013
BsiSI CCGG 5 cut(s) 794, 904, 1080, 1106, 1175
BslI CCNNNNNNNGG 2 cut(s) 523, 1412
BsmAI GTCTC 6 cut(s) 180, 273, 540, 609, 660, 1313
BsnI GGCC 7 cut(s) 125, 339, 850, 883, 1079, 1206, 1253
Bso31I GGTCTC 1 cut(s) 609
Bsp119I TTCGAA 1 cut(s) 530
Bsp1286I GDGCHC 2 cut(s) 877, 1013
Bsp143I GATC 8 cut(s) 151, 199, 919, 1055, 1147, 1240, 1300, 1402
Bsp68I TCGCGA 1 cut(s) 569
BspACI CCGC 1 cut(s) 1250
BspANI GGCC 7 cut(s) 125, 339, 850, 883, 1079, 1206, 1253
BspCNI CTCAG 4 cut(s) 264, 700, 708, 1025
BspFNI CGCG 1 cut(s) 569
BspLI GGNNCC 1 cut(s) 283
BspMI ACCTGC 1 cut(s) 738
BspPI GGATC 4 cut(s) 146, 1248, 1295, 1397
BspT104I TTCGAA 1 cut(s) 530
BspTNI GGTCTC 1 cut(s) 609
BsrDI GCAATG 3 cut(s) 762, 922, 955
BsrFI RCCGGY 1 cut(s) 1079
BsrI ACTGG 2 cut(s) 285, 1091
BssAI RCCGGY 1 cut(s) 1079
BssECI CCNNGG 3 cut(s) 878, 904, 1304
BssMI GATC 8 cut(s) 151, 199, 919, 1055, 1147, 1240, 1300, 1402
BssNI GRCGYC 1 cut(s) 111
BssT1I CCWWGG 2 cut(s) 878, 1304
Bst4CI ACNGT 4 cut(s) 263, 806, 896, 991
Bst6I CTCTTC 1 cut(s) 556
BstACI GRCGYC 1 cut(s) 111
BstBI TTCGAA 1 cut(s) 530
BstC8I GCNNGC 1 cut(s) 1025
BstDEI CTNAG 5 cut(s) 272, 695, 708, 939, 1012
BstEII GGTNACC 1 cut(s) 136
BstF5I GGATG 7 cut(s) 213, 297, 435, 511, 790, 1102, 1189
BstFNI CGCG 1 cut(s) 569
BstKTI GATC 8 cut(s) 154, 202, 922, 1058, 1150, 1243, 1303, 1405
BstMAI GTCTC 6 cut(s) 180, 273, 540, 609, 660, 1313
BstMBI GATC 8 cut(s) 151, 199, 919, 1055, 1147, 1240, 1300, 1402
BstMWI GCNNNNNNNGC 3 cut(s) 583, 1067, 1076
BstPI GGTNACC 1 cut(s) 136
BstSCI CCNGG 1 cut(s) 903
BstUI CGCG 1 cut(s) 569
BstV1I GCAGC 1 cut(s) 1039
BstV2I GAAGAC 1 cut(s) 218
BstX2I RGATCY 2 cut(s) 1300, 1402
BstXI CCANNNNNNTGG 1 cut(s) 133
BstYI RGATCY 2 cut(s) 1300, 1402
BsuRI GGCC 7 cut(s) 125, 339, 850, 883, 1079, 1206, 1253
BtsCI GGATG 7 cut(s) 213, 297, 435, 511, 790, 1102, 1189
BtsIMutI CAGTG 2 cut(s) 811, 960
BtuMI TCGCGA 1 cut(s) 569
BveI ACCTGC 1 cut(s) 738
Cac8I GCNNGC 1 cut(s) 1025
Cfr10I RCCGGY 1 cut(s) 1079
Cfr13I GGNCC 1 cut(s) 338
CseI GACGC 2 cut(s) 100, 1076
CviAII CATG 6 cut(s) 192, 218, 502, 715, 721, 1255
DdeI CTNAG 5 cut(s) 272, 695, 708, 939, 1012
DpnI GATC 8 cut(s) 153, 201, 921, 1057, 1149, 1242, 1302, 1404
DpnII GATC 8 cut(s) 151, 199, 919, 1055, 1147, 1240, 1300, 1402
DraIII CACNNNGTG 1 cut(s) 322
EaeI YGGCCR 2 cut(s) 1077, 1251
Eam1104I CTCTTC 1 cut(s) 556
EarI CTCTTC 1 cut(s) 556
Ecl136II GAGCTC 1 cut(s) 1011
Eco130I CCWWGG 2 cut(s) 878, 1304
Eco147I AGGCCT 2 cut(s) 850, 883
Eco24I GRGCYC 1 cut(s) 1013
Eco31I GGTCTC 1 cut(s) 609
Eco53kI GAGCTC 1 cut(s) 1011
Eco57I CTGAAG 3 cut(s) 378, 456, 1053
Eco91I GGTNACC 1 cut(s) 136
EcoICRI GAGCTC 1 cut(s) 1011
EcoO65I GGTNACC 1 cut(s) 136
EcoRI GAATTC 1 cut(s) 1353
EcoT14I CCWWGG 2 cut(s) 878, 1304
EcoT22I ATGCAT 1 cut(s) 1333
EcoT38I GRGCYC 1 cut(s) 1013
ErhI CCWWGG 2 cut(s) 878, 1304
FaeI CATG 6 cut(s) 195, 221, 505, 718, 724, 1258
FatI CATG 6 cut(s) 191, 217, 501, 714, 720, 1254
FbaI TGATCA 1 cut(s) 919
Fnu4HI GCNGC 2 cut(s) 1028, 1251
FokI GGATG 7 cut(s) 200, 284, 442, 518, 777, 1089, 1196
FriOI GRGCYC 1 cut(s) 1013
Fsp4HI GCNGC 2 cut(s) 1028, 1251
FspBI CTAG 4 cut(s) 14, 231, 1305, 1407
GluI GCNGC 2 cut(s) 1028, 1251
GsaI CCCAGC 1 cut(s) 501
GsuI CTGGAG 1 cut(s) 891
HaeIII GGCC 7 cut(s) 125, 339, 850, 883, 1079, 1206, 1253
HapII CCGG 5 cut(s) 794, 904, 1080, 1106, 1175
HgaI GACGC 2 cut(s) 100, 1076
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 6 cut(s) 195, 221, 505, 718, 724, 1258
HincII GTYRAC 2 cut(s) 115, 732
HindII GTYRAC 2 cut(s) 115, 732
HindIII AAGCTT 1 cut(s) 930
HinfI GANTC 9 cut(s) 188, 237, 266, 527, 548, 710, 1040, 1321, 1463
HpaII CCGG 5 cut(s) 794, 904, 1080, 1106, 1175
HphI GGTGA 4 cut(s) 130, 308, 1189, 1396
Hpy166II GTNNAC 4 cut(s) 115, 692, 732, 861
Hpy188I TCNGA 6 cut(s) 199, 273, 358, 545, 1008, 1053
Hpy188III TCNNGA 8 cut(s) 32, 568, 655, 1244, 1311, 1325, 1358, 1451
Hpy8I GTNNAC 4 cut(s) 115, 692, 732, 861
Hpy99I CGWCG 1 cut(s) 1070
HpyAV CCTTC 4 cut(s) 353, 734, 1028, 1196
HpyCH4III ACNGT 4 cut(s) 263, 806, 896, 991
HpyCH4V TGCA 9 cut(s) 278, 767, 945, 960, 1027, 1298, 1331, 1348, 1421
HpyF10VI GCNNNNNNNGC 3 cut(s) 583, 1067, 1076
HpyF3I CTNAG 5 cut(s) 272, 695, 708, 939, 1012
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 6 cut(s) 195, 221, 505, 718, 724, 1258
Ksp22I TGATCA 1 cut(s) 919
Kzo9I GATC 8 cut(s) 151, 199, 919, 1055, 1147, 1240, 1300, 1402
LmnI GCTCC 1 cut(s) 872
Lsp1109I GCAGC 1 cut(s) 1039
LweI GCATC 1 cut(s) 1318
MaeI CTAG 4 cut(s) 14, 231, 1305, 1407
MaeIII GTNAC 3 cut(s) 136, 203, 985
MalI GATC 8 cut(s) 153, 201, 921, 1057, 1149, 1242, 1302, 1404
MboI GATC 8 cut(s) 151, 199, 919, 1055, 1147, 1240, 1300, 1402
MboII GAAGA 3 cut(s) 218, 445, 543
MfeI CAATTG 1 cut(s) 156
MflI RGATCY 2 cut(s) 1300, 1402
MhlI GDGCHC 2 cut(s) 877, 1013
MluCI AATT 9 cut(s) 156, 169, 325, 345, 768, 1209, 1230, 1353, 1445
MlyI GAGTC 5 cut(s) 182, 275, 542, 719, 1315
Mph1103I ATGCAT 1 cut(s) 1333
MroXI GAANNNNTTC 1 cut(s) 563
MseI TTAA 2 cut(s) 174, 348
MslI CAYNNNNRTG 3 cut(s) 482, 719, 725
MspI CCGG 5 cut(s) 794, 904, 1080, 1106, 1175
MspR9I CCNGG 1 cut(s) 905
MunI CAATTG 1 cut(s) 156
MvnI CGCG 1 cut(s) 569
MwoI GCNNNNNNNGC 3 cut(s) 583, 1067, 1076
NciI CCSGG 1 cut(s) 905
NdeII GATC 8 cut(s) 151, 199, 919, 1055, 1147, 1240, 1300, 1402
NlaIII CATG 6 cut(s) 195, 221, 505, 718, 724, 1258
NlaIV GGNNCC 1 cut(s) 283
NmuCI GTSAC 1 cut(s) 136
NruI TCGCGA 1 cut(s) 569
NsiI ATGCAT 1 cut(s) 1333
NspV TTCGAA 1 cut(s) 530
PaqCI CACCTGC 1 cut(s) 738
PceI AGGCCT 2 cut(s) 850, 883
PdmI GAANNNNTTC 1 cut(s) 563
PfeI GAWTC 4 cut(s) 237, 527, 1040, 1463
PkrI GCNGC 2 cut(s) 1029, 1252
PleI GAGTC 5 cut(s) 182, 274, 542, 718, 1315
PpsI GAGTC 5 cut(s) 182, 274, 542, 718, 1315
PsiI TTATAA 1 cut(s) 1271
Psp124BI GAGCTC 1 cut(s) 1013
PspEI GGTNACC 1 cut(s) 136
PspFI CCCAGC 1 cut(s) 497
PspN4I GGNNCC 1 cut(s) 283
PspPI GGNCC 1 cut(s) 338
PsuI RGATCY 2 cut(s) 1300, 1402
RruI TCGCGA 1 cut(s) 569
RseI CAYNNNNRTG 3 cut(s) 482, 719, 725
SacI GAGCTC 1 cut(s) 1013
SaqAI TTAA 2 cut(s) 174, 348
SatI GCNGC 2 cut(s) 1028, 1251
Sau3AI GATC 8 cut(s) 151, 199, 919, 1055, 1147, 1240, 1300, 1402
Sau96I GGNCC 1 cut(s) 338
SchI GAGTC 5 cut(s) 182, 275, 542, 719, 1315
ScrFI CCNGG 1 cut(s) 905
SduI GDGCHC 2 cut(s) 877, 1013
SfaNI GCATC 1 cut(s) 1318
SfuI TTCGAA 1 cut(s) 530
SmiMI CAYNNNNRTG 3 cut(s) 482, 719, 725
SmlI CTYRAG 3 cut(s) 30, 1323, 1358
SmoI CTYRAG 3 cut(s) 30, 1323, 1358
Sse9I AATT 9 cut(s) 156, 169, 325, 345, 768, 1209, 1230, 1353, 1445
SseBI AGGCCT 2 cut(s) 850, 883
SsiI CCGC 1 cut(s) 1250
SspI AATATT 1 cut(s) 1127
SspMI CTAG 4 cut(s) 14, 231, 1305, 1407
SstI GAGCTC 1 cut(s) 1013
StuI AGGCCT 2 cut(s) 850, 883
StyD4I CCNGG 1 cut(s) 903
StyI CCWWGG 2 cut(s) 878, 1304
TaaI ACNGT 4 cut(s) 263, 806, 896, 991
TaqI TCGA 3 cut(s) 530, 599, 1065
TasI AATT 9 cut(s) 156, 169, 325, 345, 768, 1209, 1230, 1353, 1445
TauI GCSGC 1 cut(s) 1253
TfiI GAWTC 4 cut(s) 237, 527, 1040, 1463
Tru1I TTAA 2 cut(s) 174, 348
Tru9I TTAA 2 cut(s) 174, 348
TscAI CASTG 2 cut(s) 811, 967
TseFI GTSAC 1 cut(s) 136
TseI GCWGC 1 cut(s) 1027
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 6 cut(s) 446, 731, 779, 1032, 1091, 1455
TspRI CASTG 2 cut(s) 811, 967
XapI RAATTY 5 cut(s) 169, 325, 1230, 1353, 1445
XmaJI CCTAGG 1 cut(s) 1304
XmnI GAANNNNTTC 1 cut(s) 563
XspI CTAG 4 cut(s) 14, 231, 1305, 1407
Zsp2I ATGCAT 1 cut(s) 1333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.