Rorug04G0120300

Xyloglucan galactosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000894
Physical Location & Seq
Forward (+)
19078362 .. 19079804
1443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0120300.1

Sequence Viewer

Length: 882 bp
ATGGCTTCTTTCAAATCTGCTCTTTCACTGATGCTGCTTGCTGTACCTCTTCTTGTTATGGTTGCCTCTGCGGGTAACTTCAACCAGGACTTTCAAATTACATGGGGAGATGGCCGAGCCAAGATACTCAACAATGGCCAACTTCTTACTCTCACGCTCGACAAAGCCTCTGGCTCTGGTTTCGAATCCAAAAATGAATATCTCTTCGGCAAAATCGATATGCAGCTCAAGCTTGTTGCTGGAAACTCTGCTGGAACTGTCACCGCCTACTATTTACGCTCAGAAGGATCATTATGGGATGAAATAGACTTTGAGTTCTTGGGAAACCTGAGTGGTGACCCTTACATTCTTCACACCAATGTGTTCACCCAAGGCAAAGGAAACAGAGAGCAACAATTCTATCTCTGGTTCGACCCAACCGCTGATTTCCACACCTATTCCATTCTCTGGAATCCACAGCGCATTGTTTTCTCTGTGGATGGAACTCCCATTAGAGAGTTCAAGAACATGGAATCAATTGGCATTCCATTCCCAAAGAACCAGCCAATGAGATTAACCTCTAGTCTCTGGAATGCTGATGATTGGGCAACAAGGGGAGGGCTTGTGAAGACAGATTGGAGCAAAGCTCCTTTCACTGCTTCCTACAGGAACTTCAATGCCGACAAGGCTTGTATTTGGTCAAGGACTAAAAAAACATCTTCGTGCAGCTCGTCATCGTCATCGTCAAGTTCTAAAATACCTGGTAATGAATGGCTCACAGAAGATCTCGACACAACGAAGCAGGAGAGGCTGAGATGGGTGCAGAAGAACTACATGATCTATAATTACTGCTCTGACATTAAGAGATTTCCCCAGGGACTCCCTACTGAATGCAAGTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

293

Amino Acids

33.09

Weight (kDa)

8.23

Isoelectric Point (pI)

35.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 27 - 208 1.2e-66 Glycosyl hydrolases family 16
XET_C PF06955 249 - 291 1.6e-20 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 447
AciI CCGC 3 cut(s) 71, 264, 420
AclWI GGATC 1 cut(s) 295
AcoI YGGCCR 2 cut(s) 112, 136
AfaI GTAC 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 447
AgsI TTSAA 5 cut(s) 13, 82, 95, 502, 655
AjnI CCWGG 3 cut(s) 84, 739, 852
AleI CACNNNNGTG 1 cut(s) 359
AluBI AGCT 4 cut(s) 226, 232, 626, 708
AluI AGCT 4 cut(s) 226, 232, 626, 708
Alw26I GTCTC 1 cut(s) 569
AlwI GGATC 1 cut(s) 295
AoxI GGCC 2 cut(s) 112, 136
ApeKI GCWGC 3 cut(s) 34, 223, 705
AspLEI GCGC 1 cut(s) 462
AsuHPI GGTGA 3 cut(s) 253, 347, 358
AsuII TTCGAA 1 cut(s) 183
BalI TGGCCA 1 cut(s) 138
BbsI GAAGAC 1 cut(s) 614
BbvI GCAGC 3 cut(s) 21, 235, 717
BccI CCATC 3 cut(s) 104, 473, 789
BciT130I CCWGG 3 cut(s) 86, 741, 854
BcoDI GTCTC 1 cut(s) 569
BfaI CTAG 1 cut(s) 561
BfmI CTRYAG 1 cut(s) 643
BglI GCCNNNNNGGC 1 cut(s) 665
BglII AGATCT 1 cut(s) 763
BisI GCNGC 3 cut(s) 35, 224, 706
BlsI GCNGC 3 cut(s) 36, 225, 707
Bme1390I CCNGG 3 cut(s) 86, 741, 854
BmrFI CCNGG 3 cut(s) 86, 741, 854
BmsI GCATC 1 cut(s) 21
BpiI GAAGAC 1 cut(s) 614
BplI GAGNNNNNCTC 2 cut(s) 610, 642
Bpu14I TTCGAA 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 212
Bsa29I ATCGAT 1 cut(s) 216
BsaJI CCNNGG 3 cut(s) 370, 852, 853
BsaXI ACNNNNNCTCC 2 cut(s) 588, 618
Bsc4I CCNNNNNNNGG 1 cut(s) 447
BseBI CCWGG 3 cut(s) 86, 741, 854
BseCI ATCGAT 1 cut(s) 216
BseDI CCNNGG 3 cut(s) 370, 852, 853
BseGI GGATG 2 cut(s) 304, 484
BseLI CCNNNNNNNGG 1 cut(s) 447
BseMII CTCAG 3 cut(s) 294, 320, 782
BseXI GCAGC 3 cut(s) 21, 235, 717
BsgI GTGCAG 2 cut(s) 724, 821
BshFI GGCC 2 cut(s) 114, 138
BshVI ATCGAT 1 cut(s) 216
BslFI GGGAC 1 cut(s) 870
BslI CCNNNNNNNGG 1 cut(s) 447
BsmAI GTCTC 1 cut(s) 569
BsmFI GGGAC 1 cut(s) 870
BsmI GAATGC 3 cut(s) 522, 577, 875
BsnI GGCC 2 cut(s) 114, 138
Bsp119I TTCGAA 1 cut(s) 183
Bsp143I GATC 3 cut(s) 287, 763, 816
BspACI CCGC 3 cut(s) 71, 264, 420
BspANI GGCC 2 cut(s) 114, 138
BspCNI CTCAG 3 cut(s) 293, 321, 783
BspDI ATCGAT 1 cut(s) 216
BspPI GGATC 1 cut(s) 295
BspT104I TTCGAA 1 cut(s) 183
BssECI CCNNGG 3 cut(s) 370, 852, 853
BssMI GATC 3 cut(s) 287, 763, 816
BssT1I CCWWGG 1 cut(s) 370
Bst2UI CCWGG 3 cut(s) 86, 741, 854
Bst4CI ACNGT 1 cut(s) 259
Bst6I CTCTTC 2 cut(s) 54, 209
BstBI TTCGAA 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 3 cut(s) 280, 329, 791
BstEII GGTNACC 1 cut(s) 335
BstF5I GGATG 2 cut(s) 304, 484
BstHHI GCGC 1 cut(s) 462
BstKTI GATC 3 cut(s) 290, 766, 819
BstMAI GTCTC 1 cut(s) 569
BstMBI GATC 3 cut(s) 287, 763, 816
BstMWI GCNNNNNNNGC 3 cut(s) 229, 665, 787
BstNI CCWGG 3 cut(s) 86, 741, 854
BstPI GGTNACC 1 cut(s) 335
BstSCI CCNGG 3 cut(s) 84, 739, 852
BstSFI CTRYAG 1 cut(s) 643
BstV1I GCAGC 3 cut(s) 21, 235, 717
BstV2I GAAGAC 1 cut(s) 614
BstX2I RGATCY 1 cut(s) 763
BstYI RGATCY 1 cut(s) 763
Bsu15I ATCGAT 1 cut(s) 216
BsuRI GGCC 2 cut(s) 114, 138
BsuTUI ATCGAT 1 cut(s) 216
BtsCI GGATG 2 cut(s) 304, 484
BtsI GCAGTG 1 cut(s) 633
BtsIMutI CAGTG 2 cut(s) 26, 633
Cac8I GCNNGC 1 cut(s) 39
CfoI GCGC 1 cut(s) 462
ClaI ATCGAT 1 cut(s) 216
CsiI ACCWGGT 1 cut(s) 739
Csp6I GTAC 1 cut(s) 44
CviAII CATG 3 cut(s) 102, 508, 814
CviQI GTAC 1 cut(s) 44
DdeI CTNAG 3 cut(s) 280, 329, 791
DpnI GATC 3 cut(s) 289, 765, 818
DpnII GATC 3 cut(s) 287, 763, 816
EaeI YGGCCR 2 cut(s) 112, 136
Eam1104I CTCTTC 2 cut(s) 54, 209
EarI CTCTTC 2 cut(s) 54, 209
Eco130I CCWWGG 1 cut(s) 370
Eco91I GGTNACC 1 cut(s) 335
EcoO65I GGTNACC 1 cut(s) 335
EcoRII CCWGG 3 cut(s) 84, 739, 852
EcoT14I CCWWGG 1 cut(s) 370
ErhI CCWWGG 1 cut(s) 370
FaeI CATG 3 cut(s) 105, 511, 817
FaiI YATR 7 cut(s) 59, 103, 221, 295, 509, 815, 822
FaqI GGGAC 1 cut(s) 870
FatI CATG 3 cut(s) 101, 507, 813
FauI CCCGC 1 cut(s) 64
Fnu4HI GCNGC 3 cut(s) 35, 224, 706
FokI GGATG 2 cut(s) 311, 491
Fsp4HI GCNGC 3 cut(s) 35, 224, 706
FspBI CTAG 1 cut(s) 561
GlaI GCGC 1 cut(s) 461
GluI GCNGC 3 cut(s) 35, 224, 706
HaeIII GGCC 2 cut(s) 114, 138
HhaI GCGC 1 cut(s) 462
Hin1II CATG 3 cut(s) 105, 511, 817
Hin6I GCGC 1 cut(s) 460
HinP1I GCGC 1 cut(s) 460
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 4 cut(s) 185, 451, 512, 858
HphI GGTGA 3 cut(s) 253, 347, 358
Hpy166II GTNNAC 1 cut(s) 366
Hpy188I TCNGA 2 cut(s) 283, 835
Hpy188III TCNNGA 4 cut(s) 448, 502, 568, 767
Hpy8I GTNNAC 1 cut(s) 366
HpyAV CCTTC 1 cut(s) 278
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4V TGCA 4 cut(s) 223, 705, 802, 873
HpyF10VI GCNNNNNNNGC 3 cut(s) 229, 665, 787
HpyF3I CTNAG 3 cut(s) 280, 329, 791
Hsp92II CATG 3 cut(s) 105, 511, 817
HspAI GCGC 1 cut(s) 460
Kzo9I GATC 3 cut(s) 287, 763, 816
LmnI GCTCC 2 cut(s) 618, 631
Lsp1109I GCAGC 3 cut(s) 21, 235, 717
LweI GCATC 1 cut(s) 21
MabI ACCWGGT 1 cut(s) 739
MaeI CTAG 1 cut(s) 561
MaeIII GTNAC 3 cut(s) 74, 259, 335
MalI GATC 3 cut(s) 289, 765, 818
MboI GATC 3 cut(s) 287, 763, 816
MboII GAAGA 7 cut(s) 41, 196, 341, 619, 690, 773, 817
MfeI CAATTG 1 cut(s) 516
MflI RGATCY 1 cut(s) 763
MlsI TGGCCA 1 cut(s) 138
MluCI AATT 4 cut(s) 96, 395, 516, 823
MluNI TGGCCA 1 cut(s) 138
MlyI GAGTC 1 cut(s) 852
MnlI CCTC 6 cut(s) 57, 76, 178, 568, 590, 780
Mox20I TGGCCA 1 cut(s) 138
MscI TGGCCA 1 cut(s) 138
MseI TTAA 2 cut(s) 554, 840
MslI CAYNNNNRTG 3 cut(s) 357, 359, 700
Msp20I TGGCCA 1 cut(s) 138
MspA1I CMGCKG 1 cut(s) 422
MspR9I CCNGG 3 cut(s) 86, 741, 854
MunI CAATTG 1 cut(s) 516
Mva1269I GAATGC 3 cut(s) 522, 577, 875
MvaI CCWGG 3 cut(s) 86, 741, 854
MwoI GCNNNNNNNGC 3 cut(s) 229, 665, 787
NdeII GATC 3 cut(s) 287, 763, 816
NlaIII CATG 3 cut(s) 105, 511, 817
NmeAIII GCCGAG 1 cut(s) 140
NmuCI GTSAC 2 cut(s) 259, 335
NspV TTCGAA 1 cut(s) 183
OliI CACNNNNGTG 1 cut(s) 359
PasI CCCWGGG 1 cut(s) 853
PcsI WCGNNNNNNNCGW 2 cut(s) 213, 707
PctI GAATGC 3 cut(s) 522, 577, 875
PfeI GAWTC 3 cut(s) 185, 451, 512
PflMI CCANNNNNTGG 1 cut(s) 447
PkrI GCNGC 3 cut(s) 36, 225, 707
PleI GAGTC 1 cut(s) 852
PpsI GAGTC 1 cut(s) 852
Psp6I CCWGG 3 cut(s) 84, 739, 852
PspEI GGTNACC 1 cut(s) 335
PspGI CCWGG 3 cut(s) 84, 739, 852
PsuI RGATCY 1 cut(s) 763
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
RseI CAYNNNNRTG 3 cut(s) 357, 359, 700
SaqAI TTAA 2 cut(s) 554, 840
SatI GCNGC 3 cut(s) 35, 224, 706
Sau3AI GATC 3 cut(s) 287, 763, 816
SchI GAGTC 1 cut(s) 852
ScrFI CCNGG 3 cut(s) 86, 741, 854
SetI ASST 9 cut(s) 49, 228, 234, 330, 437, 560, 628, 710, 742
SexAI ACCWGGT 1 cut(s) 739
SfaNI GCATC 1 cut(s) 21
SfcI CTRYAG 1 cut(s) 643
SfuI TTCGAA 1 cut(s) 183
SmiMI CAYNNNNRTG 3 cut(s) 357, 359, 700
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 4 cut(s) 96, 395, 516, 823
SsiI CCGC 3 cut(s) 71, 264, 420
SspMI CTAG 1 cut(s) 561
StyD4I CCNGG 3 cut(s) 84, 739, 852
StyI CCWWGG 1 cut(s) 370
TaaI ACNGT 1 cut(s) 259
TaqI TCGA 5 cut(s) 159, 183, 216, 411, 768
TasI AATT 4 cut(s) 96, 395, 516, 823
TfiI GAWTC 3 cut(s) 185, 451, 512
Tru1I TTAA 2 cut(s) 554, 840
Tru9I TTAA 2 cut(s) 554, 840
TscAI CASTG 2 cut(s) 33, 640
TseFI GTSAC 2 cut(s) 259, 335
TseI GCWGC 3 cut(s) 34, 223, 705
Tsp45I GTSAC 2 cut(s) 259, 335
TspDTI ATGAA 3 cut(s) 210, 315, 762
TspRI CASTG 2 cut(s) 33, 640
Van91I CCANNNNNTGG 1 cut(s) 447
XspI CTAG 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.