Prupe.1G165800_v2.0.a1

Xyloglucan galactosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000894
Physical Location & Seq
Forward (+)
13446807 .. 13448279
1473 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G165800.1

Sequence Viewer

Length: 1473 bp
ATGGAAAAACCACTTGCCAGAAAGTCCTCTCAAGAAGTCTGGTCTGGCATACTAGCACCCTTTTTTATTTTGTGCCTTGTATTGCTTTGCTTGAGTTATTCAACTCTATTGGGTGTCACCAATGGGGTCAATCTTTTGGTGATTAAACAAGTTCATACAATCAACATTTGGAAGATCAACCACACCGAAGATTCGTGCGCCAATCGTTACATTTACATCCATGAGGGTCTTCCTGCCAGATTCAACTATGACTTCCTCAACAACTGTGAGTCTCTAAGTGCAGGGACTTGTAATTGTAACACACCAAATATGTGTCCTCACCTTGTGAATTTGGGGCTTGGTCCTCAAGTTAACGACTCCGAAGGTGTTTTAGCCAACAAGAGTTGGTTTAAAACAAATCCTTACTTGTTAGAAGTCATATTCCACAACAAGATGAAGCGGTATGAGTGTTTGACAAAAAACTCCTCTCTGGCTTCAGCCATTTATGTGCCATTCTATCCCAGCATGGATGTTGGTGTCCATCTGTGGGATTCTAACCTCACTATCAGAGACTCTTCAGCTAGAGATTATGTAAAGTGGCTTTCGGGACAACCCGAATGGATGAAAATGTGGGGGAGAGACCATTTCTTTGTTTCCGGGAGGATTGCTTGGGATTTCAGGAGGGAAAGAGACAATAGTTCTGATTGGGGTAGTAAACTCAGGTTCTTGCCTGAGTCCATGAACATGACCATGTTGTCAATTGAAGGAGGGAGATGGAAAAACGACATTGCAATTCCCTACCCCACAAACTTTCATCCTGCAAAGGACAGTGAGGTTGTTCAATGGCAGAACAGAGTTAGAGAACAAGAAAGGCGTTATTTGTTCTCTTTTGTTGGCGCACCAAGGCCTCACCAGCAGACTTCAATCCGGGGAAAACTTATTGATCATTGCCAAGCTTCAACTAATTGCAAGTTTCTACATTGCGATGAAAAGAAATGTGGCAACCCTGTTACTGTTATGAGGGTGTTTAAGAGCTCTGTTTATTGCTTGCAGCCTGGAGGGGATTCATACACTAGGAGGTCAGCTTTCGACGCATTTCTGGCCGGTTGCATTCCAGTTTTCTTTCATCCGGCTACGGCTTATACTCAATATTTATGGCATTTGCCAAAGAATCATACCAAGTTTTCCGTATTTATTCCGGTAAGGGATGTAGAAGATTTGAAAGAAGGCCTAATTGAGAAAGTGTTGCTTGGAATTTCGAAGGATAAGGAGGTGGCCATGAGAGAGGAGGTTATAAGGCTAATACCAAAGTTGGTATATGCAAATCCCAGGTCAAGATTAGGGACTCAAGATGCATTTGACATCGCTGTGCAGGGAATTCTTGAGAGAATAGAGAATGTGAGAAAGGTGATTAGAGAGGGGAGGGATCCTAGTATTGGTTTTGCAGATGAGGATAATGATAAGTTCAAATTTCCTGAGACACTAGACTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

491

Amino Acids

56.28

Weight (kDa)

8.53

Isoelectric Point (pI)

43.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1274
AasI GACNNNNNNGTC 1 cut(s) 733
AciI CCGC 1 cut(s) 439
AclWI GGATC 2 cut(s) 1400, 1413
AcoI YGGCCR 2 cut(s) 1080, 1254
AcsI RAATTY 4 cut(s) 328, 1233, 1356, 1448
AcuI CTGAAG 2 cut(s) 459, 540
AdeI CACNNNGTG 1 cut(s) 325
AfiI CCNNNNNNNGG 2 cut(s) 526, 1415
AgsI TTSAA 8 cut(s) 102, 244, 743, 821, 903, 939, 1201, 1447
AjnI CCWGG 2 cut(s) 1033, 1307
AluBI AGCT 4 cut(s) 560, 935, 1014, 1064
AluI AGCT 4 cut(s) 560, 935, 1014, 1064
Alw21I GWGCWC 1 cut(s) 1016
Alw26I GTCTC 5 cut(s) 276, 543, 612, 663, 1451
AlwI GGATC 2 cut(s) 1400, 1413
AoxI GGCC 4 cut(s) 884, 1080, 1207, 1254
ApeKI GCWGC 1 cut(s) 1030
ApoI RAATTY 4 cut(s) 328, 1233, 1356, 1448
ArsI GACNNNNNNTTYG 4 cut(s) 611, 643, 1295, 1327
AspLEI GCGC 2 cut(s) 200, 878
AspS9I GGNCC 1 cut(s) 341
AsuC2I CCSGG 2 cut(s) 637, 908
AsuHPI GGTGA 5 cut(s) 109, 151, 311, 881, 1399
AsuII TTCGAA 1 cut(s) 1238
AvaII GGWCC 1 cut(s) 341
BalI TGGCCA 1 cut(s) 1256
BamHI GGATCC 1 cut(s) 1405
BanII GRGCYC 1 cut(s) 1016
BbsI GAAGAC 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 1016
BbvI GCAGC 1 cut(s) 1042
BccI CCATC 2 cut(s) 528, 747
BceAI ACGGC 1 cut(s) 1131
BciT130I CCWGG 2 cut(s) 1035, 1309
BclI TGATCA 1 cut(s) 922
BcnI CCSGG 2 cut(s) 637, 908
BcoDI GTCTC 5 cut(s) 276, 543, 612, 663, 1451
BfaI CTAG 5 cut(s) 53, 561, 1053, 1410, 1463
BisI GCNGC 1 cut(s) 1031
BlsI GCNGC 1 cut(s) 1032
Bme1390I CCNGG 4 cut(s) 637, 908, 1035, 1309
Bme18I GGWCC 1 cut(s) 341
BmgT120I GGNCC 1 cut(s) 341
BmiI GGNNCC 1 cut(s) 1407
BmrFI CCNGG 4 cut(s) 637, 908, 1035, 1309
BmsI GCATC 1 cut(s) 1321
BpiI GAAGAC 1 cut(s) 221
BpmI CTGGAG 1 cut(s) 1056
Bpu14I TTCGAA 1 cut(s) 1238
BpuEI CTTGAG 5 cut(s) 15, 112, 330, 1311, 1382
BpuMI CCSGG 2 cut(s) 637, 908
BsaI GGTCTC 1 cut(s) 612
BsaJI CCNNGG 3 cut(s) 881, 907, 1307
BsaWI WCCGGW 1 cut(s) 1177
Bsc4I CCNNNNNNNGG 2 cut(s) 526, 1415
Bse118I RCCGGY 1 cut(s) 1082
Bse1I ACTGG 1 cut(s) 1094
Bse3DI GCAATG 3 cut(s) 765, 925, 958
BseBI CCWGG 2 cut(s) 1035, 1309
BseDI CCNNGG 3 cut(s) 881, 907, 1307
BseGI GGATG 6 cut(s) 216, 514, 606, 793, 1105, 1192
BseLI CCNNNNNNNGG 2 cut(s) 526, 1415
BseMI GCAATG 3 cut(s) 765, 925, 958
BseMII CTCAG 3 cut(s) 702, 712, 1446
BseNI ACTGG 1 cut(s) 1094
BseRI GAGGAG 2 cut(s) 454, 1280
BseXI GCAGC 1 cut(s) 1042
BseYI CCCAGC 1 cut(s) 500
BsgI GTGCAG 2 cut(s) 300, 1370
BshFI GGCC 4 cut(s) 886, 1082, 1209, 1256
BsiHKAI GWGCWC 1 cut(s) 1016
BsiSI CCGG 5 cut(s) 636, 907, 1083, 1109, 1178
BslFI GGGAC 3 cut(s) 298, 600, 1336
BslI CCNNNNNNNGG 2 cut(s) 526, 1415
BsmAI GTCTC 5 cut(s) 276, 543, 612, 663, 1451
BsmFI GGGAC 3 cut(s) 298, 600, 1336
BsmI GAATGC 1 cut(s) 1089
BsnI GGCC 4 cut(s) 886, 1082, 1209, 1256
Bso31I GGTCTC 1 cut(s) 612
Bsp119I TTCGAA 1 cut(s) 1238
Bsp1286I GDGCHC 1 cut(s) 1016
Bsp143I GATC 3 cut(s) 174, 922, 1405
BspACI CCGC 1 cut(s) 439
BspANI GGCC 4 cut(s) 886, 1082, 1209, 1256
BspCNI CTCAG 3 cut(s) 703, 711, 1447
BspLI GGNNCC 1 cut(s) 1407
BspPI GGATC 2 cut(s) 1400, 1413
BspT104I TTCGAA 1 cut(s) 1238
BspTNI GGTCTC 1 cut(s) 612
BsrDI GCAATG 3 cut(s) 765, 925, 958
BsrFI RCCGGY 1 cut(s) 1082
BsrI ACTGG 1 cut(s) 1094
BssAI RCCGGY 1 cut(s) 1082
BssECI CCNNGG 3 cut(s) 881, 907, 1307
BssMI GATC 3 cut(s) 174, 922, 1405
BssT1I CCWWGG 1 cut(s) 881
Bst2UI CCWGG 2 cut(s) 1035, 1309
Bst4CI ACNGT 3 cut(s) 266, 809, 994
Bst6I CTCTTC 1 cut(s) 559
BstBI TTCGAA 1 cut(s) 1238
BstC8I GCNNGC 1 cut(s) 1028
BstDEI CTNAG 4 cut(s) 275, 698, 711, 1455
BstF5I GGATG 6 cut(s) 216, 514, 606, 793, 1105, 1192
BstHHI GCGC 2 cut(s) 200, 878
BstKTI GATC 3 cut(s) 177, 925, 1408
BstMAI GTCTC 5 cut(s) 276, 543, 612, 663, 1451
BstMBI GATC 3 cut(s) 174, 922, 1405
BstMWI GCNNNNNNNGC 3 cut(s) 892, 1070, 1079
BstNI CCWGG 2 cut(s) 1035, 1309
BstSCI CCNGG 4 cut(s) 635, 906, 1033, 1307
BstV1I GCAGC 1 cut(s) 1042
BstV2I GAAGAC 1 cut(s) 221
BstX2I RGATCY 1 cut(s) 1405
BstYI RGATCY 1 cut(s) 1405
BsuRI GGCC 4 cut(s) 886, 1082, 1209, 1256
BtgZI GCGATG 2 cut(s) 978, 1327
BtsCI GGATG 6 cut(s) 216, 514, 606, 793, 1105, 1192
BtsIMutI CAGTG 1 cut(s) 814
Cac8I GCNNGC 1 cut(s) 1028
CfoI GCGC 2 cut(s) 200, 878
Cfr10I RCCGGY 1 cut(s) 1082
Cfr13I GGNCC 1 cut(s) 341
CseI GACGC 1 cut(s) 1079
CviAII CATG 6 cut(s) 221, 505, 718, 724, 730, 1258
DdeI CTNAG 4 cut(s) 275, 698, 711, 1455
DpnI GATC 3 cut(s) 176, 924, 1407
DpnII GATC 3 cut(s) 174, 922, 1405
DraI TTTAAA 1 cut(s) 391
DraIII CACNNNGTG 1 cut(s) 325
DrdI GACNNNNNNGTC 1 cut(s) 733
DseDI GACNNNNNNGTC 1 cut(s) 733
EaeI YGGCCR 2 cut(s) 1080, 1254
Eam1104I CTCTTC 1 cut(s) 559
EarI CTCTTC 1 cut(s) 559
Ecl136II GAGCTC 1 cut(s) 1014
Eco130I CCWWGG 1 cut(s) 881
Eco147I AGGCCT 2 cut(s) 886, 1209
Eco24I GRGCYC 1 cut(s) 1016
Eco31I GGTCTC 1 cut(s) 612
Eco47I GGWCC 1 cut(s) 341
Eco53kI GAGCTC 1 cut(s) 1014
Eco57I CTGAAG 2 cut(s) 459, 540
EcoICRI GAGCTC 1 cut(s) 1014
EcoRI GAATTC 1 cut(s) 1356
EcoRII CCWGG 2 cut(s) 1033, 1307
EcoT14I CCWWGG 1 cut(s) 881
EcoT22I ATGCAT 1 cut(s) 1336
EcoT38I GRGCYC 1 cut(s) 1016
ErhI CCWWGG 1 cut(s) 881
FaeI CATG 6 cut(s) 224, 508, 721, 727, 733, 1261
FalI AAGNNNNNCTT 2 cut(s) 1212, 1244
FaqI GGGAC 3 cut(s) 298, 600, 1336
FatI CATG 6 cut(s) 220, 504, 717, 723, 729, 1257
FbaI TGATCA 1 cut(s) 922
Fnu4HI GCNGC 1 cut(s) 1031
FokI GGATG 6 cut(s) 203, 521, 613, 780, 1092, 1199
FriOI GRGCYC 1 cut(s) 1016
Fsp4HI GCNGC 1 cut(s) 1031
FspBI CTAG 5 cut(s) 53, 561, 1053, 1410, 1463
GlaI GCGC 2 cut(s) 199, 877
GluI GCNGC 1 cut(s) 1031
GsaI CCCAGC 1 cut(s) 504
GsuI CTGGAG 1 cut(s) 1056
HaeIII GGCC 4 cut(s) 886, 1082, 1209, 1256
HapII CCGG 5 cut(s) 636, 907, 1083, 1109, 1178
HgaI GACGC 1 cut(s) 1079
HhaI GCGC 2 cut(s) 200, 878
Hin1II CATG 6 cut(s) 224, 508, 721, 727, 733, 1261
Hin6I GCGC 2 cut(s) 198, 876
HinP1I GCGC 2 cut(s) 198, 876
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HindIII AAGCTT 1 cut(s) 933
HpaI GTTAAC 1 cut(s) 352
HpaII CCGG 5 cut(s) 636, 907, 1083, 1109, 1178
HphI GGTGA 5 cut(s) 109, 151, 311, 881, 1399
Hpy166II GTNNAC 2 cut(s) 352, 695
Hpy188I TCNGA 3 cut(s) 361, 548, 682
Hpy188III TCNNGA 7 cut(s) 32, 585, 658, 1314, 1328, 1361, 1454
Hpy8I GTNNAC 2 cut(s) 352, 695
Hpy99I CGWCG 1 cut(s) 1073
HpyAV CCTTC 4 cut(s) 356, 737, 1199, 1234
HpyCH4III ACNGT 3 cut(s) 266, 809, 994
HpyF10VI GCNNNNNNNGC 3 cut(s) 892, 1070, 1079
HpyF3I CTNAG 4 cut(s) 275, 698, 711, 1455
Hsp92II CATG 6 cut(s) 224, 508, 721, 727, 733, 1261
HspAI GCGC 2 cut(s) 198, 876
Ksp22I TGATCA 1 cut(s) 922
KspAI GTTAAC 1 cut(s) 352
Kzo9I GATC 3 cut(s) 174, 922, 1405
Lsp1109I GCAGC 1 cut(s) 1042
LweI GCATC 1 cut(s) 1321
MaeI CTAG 5 cut(s) 53, 561, 1053, 1410, 1463
MaeIII GTNAC 4 cut(s) 115, 206, 296, 988
MalI GATC 3 cut(s) 176, 924, 1407
MboI GATC 3 cut(s) 174, 922, 1405
MboII GAAGA 5 cut(s) 184, 200, 221, 546, 1205
MfeI CAATTG 1 cut(s) 738
MflI RGATCY 1 cut(s) 1405
MhlI GDGCHC 1 cut(s) 1016
MlsI TGGCCA 1 cut(s) 1256
MluCI AATT 9 cut(s) 292, 328, 738, 771, 943, 1212, 1233, 1356, 1448
MluNI TGGCCA 1 cut(s) 1256
MlyI GAGTC 6 cut(s) 278, 350, 545, 722, 1318, 1460
Mox20I TGGCCA 1 cut(s) 1256
Mph1103I ATGCAT 1 cut(s) 1336
MscI TGGCCA 1 cut(s) 1256
MseI TTAA 4 cut(s) 144, 351, 390, 1008
MslI CAYNNNNRTG 5 cut(s) 485, 722, 728, 963, 1346
Msp20I TGGCCA 1 cut(s) 1256
MspI CCGG 5 cut(s) 636, 907, 1083, 1109, 1178
MspR9I CCNGG 4 cut(s) 637, 908, 1035, 1309
MunI CAATTG 1 cut(s) 738
Mva1269I GAATGC 1 cut(s) 1089
MvaI CCWGG 2 cut(s) 1035, 1309
MwoI GCNNNNNNNGC 3 cut(s) 892, 1070, 1079
NciI CCSGG 2 cut(s) 637, 908
NdeII GATC 3 cut(s) 174, 922, 1405
NlaIII CATG 6 cut(s) 224, 508, 721, 727, 733, 1261
NlaIV GGNNCC 1 cut(s) 1407
NmuCI GTSAC 1 cut(s) 115
NsiI ATGCAT 1 cut(s) 1336
NspV TTCGAA 1 cut(s) 1238
PceI AGGCCT 2 cut(s) 886, 1209
PctI GAATGC 1 cut(s) 1089
PfeI GAWTC 5 cut(s) 191, 240, 530, 1043, 1150
PfoI TCCNGGA 1 cut(s) 635
PkrI GCNGC 1 cut(s) 1032
PleI GAGTC 6 cut(s) 277, 350, 545, 721, 1318, 1460
PpsI GAGTC 6 cut(s) 277, 350, 545, 721, 1318, 1460
PsiI TTATAA 1 cut(s) 1274
Psp124BI GAGCTC 1 cut(s) 1016
Psp6I CCWGG 2 cut(s) 1033, 1307
PspFI CCCAGC 1 cut(s) 500
PspGI CCWGG 2 cut(s) 1033, 1307
PspN4I GGNNCC 1 cut(s) 1407
PspPI GGNCC 1 cut(s) 341
PsuI RGATCY 1 cut(s) 1405
RseI CAYNNNNRTG 5 cut(s) 485, 722, 728, 963, 1346
SacI GAGCTC 1 cut(s) 1016
SaqAI TTAA 4 cut(s) 144, 351, 390, 1008
SatI GCNGC 1 cut(s) 1031
Sau3AI GATC 3 cut(s) 174, 922, 1405
Sau96I GGNCC 1 cut(s) 341
SchI GAGTC 6 cut(s) 278, 350, 545, 722, 1318, 1460
ScrFI CCNGG 4 cut(s) 637, 908, 1035, 1309
SduI GDGCHC 1 cut(s) 1016
SfaNI GCATC 1 cut(s) 1321
SfuI TTCGAA 1 cut(s) 1238
SinI GGWCC 1 cut(s) 341
SmiMI CAYNNNNRTG 5 cut(s) 485, 722, 728, 963, 1346
SmlI CTYRAG 5 cut(s) 30, 91, 345, 1326, 1361
SmoI CTYRAG 5 cut(s) 30, 91, 345, 1326, 1361
Sse9I AATT 9 cut(s) 292, 328, 738, 771, 943, 1212, 1233, 1356, 1448
SseBI AGGCCT 2 cut(s) 886, 1209
SsiI CCGC 1 cut(s) 439
SspI AATATT 1 cut(s) 1130
SspMI CTAG 5 cut(s) 53, 561, 1053, 1410, 1463
SstI GAGCTC 1 cut(s) 1016
StuI AGGCCT 2 cut(s) 886, 1209
StyD4I CCNGG 4 cut(s) 635, 906, 1033, 1307
StyI CCWWGG 1 cut(s) 881
TaaI ACNGT 3 cut(s) 266, 809, 994
TaqI TCGA 2 cut(s) 1068, 1238
TasI AATT 9 cut(s) 292, 328, 738, 771, 943, 1212, 1233, 1356, 1448
TfiI GAWTC 5 cut(s) 191, 240, 530, 1043, 1150
Tru1I TTAA 4 cut(s) 144, 351, 390, 1008
Tru9I TTAA 4 cut(s) 144, 351, 390, 1008
TscAI CASTG 1 cut(s) 814
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 1 cut(s) 1030
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 8 cut(s) 143, 449, 617, 734, 782, 981, 1035, 1094
TspGWI ACGGA 1 cut(s) 1156
TspRI CASTG 1 cut(s) 814
VpaK11BI GGWCC 1 cut(s) 341
XapI RAATTY 4 cut(s) 328, 1233, 1356, 1448
XspI CTAG 5 cut(s) 53, 561, 1053, 1410, 1463
Zsp2I ATGCAT 1 cut(s) 1336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.