Rh4AG179800

Xyloglucan galactosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000894
Physical Location & Seq
Reverse (-)
44952807 .. 44954170
1364 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG179800.1

Sequence Viewer

Length: 534 bp
ATGGAAGAAAATGTGGGGCAGAGACCATTTTTTGTTGTTGGGAGGATTTCATGGGATTTCAGAAGGAAAACAGACCACAATACTGATTGGGGTAGTAAATTCCGCTTCTTGCCAGAGTCTAAGAATATGACTATGTTGTCAATTGAAGGAAGCTCATGGACAAATTATATTGCTATACCATACCCTACAGGCTTTCACCCTGCAAAGGACAGTGAGGTGTTACAATGGCAGAACAAAATGAGAAAACAAGAAAGGCCTTACTTGTTTGCTTTTGTTGGGGGACCGAGGCCTGAGCTAGAAACTTCAATTCGGGTTAAACTTATTGAACAGTGGCAAGCTTCAAGTACTTGCAAGTTACTAGATTGCAATTCAGGCCGGAACAATTGTGCTCAACCTGTTACAATTAAGAGGGTGTTTCAAAGATCAGTCTATTGCTTGCAGCCTACAGGGGATTCATACACTAGGAAATCCGCTTTTGACTCTTTCCTAGCTGGTTGTATCCCCGTTTTCTTTCATCCAGGAAATGCTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

177

Amino Acids

20.4

Weight (kDa)

9.32

Isoelectric Point (pI)

49.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 6 - 172 6.6e-40 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 136
AciI CCGC 2 cut(s) 103, 471
AcsI RAATTY 1 cut(s) 98
AfaI GTAC 1 cut(s) 346
AfiI CCNNNNNNNGG 1 cut(s) 205
AgsI TTSAA 5 cut(s) 146, 306, 326, 342, 419
AjnI CCWGG 1 cut(s) 517
AluBI AGCT 4 cut(s) 153, 295, 338, 491
AluI AGCT 4 cut(s) 153, 295, 338, 491
Alw21I GWGCWC 1 cut(s) 391
Alw26I GTCTC 1 cut(s) 16
AoxI GGCC 3 cut(s) 254, 287, 373
ApeKI GCWGC 1 cut(s) 439
ApoI RAATTY 1 cut(s) 98
AspS9I GGNCC 1 cut(s) 281
AsuHPI GGTGA 1 cut(s) 188
AvaII GGWCC 1 cut(s) 281
Bbv12I GWGCWC 1 cut(s) 391
BbvI GCAGC 1 cut(s) 451
BciT130I CCWGG 1 cut(s) 519
BciVI GTATCC 1 cut(s) 509
BcoDI GTCTC 1 cut(s) 16
BfaI CTAG 4 cut(s) 296, 359, 462, 488
BfmI CTRYAG 2 cut(s) 186, 444
BfuI GTATCC 1 cut(s) 509
BisI GCNGC 1 cut(s) 440
BlsI GCNGC 1 cut(s) 441
BmcAI AGTACT 1 cut(s) 346
Bme1390I CCNGG 1 cut(s) 519
Bme18I GGWCC 1 cut(s) 281
BmgT120I GGNCC 1 cut(s) 281
BmiI GGNNCC 1 cut(s) 282
BmrFI CCNGG 1 cut(s) 519
Bpu10I CCTNAGC 1 cut(s) 291
BsaI GGTCTC 1 cut(s) 16
BsaJI CCNNGG 1 cut(s) 284
Bsc4I CCNNNNNNNGG 1 cut(s) 205
BseBI CCWGG 1 cut(s) 519
BseDI CCNNGG 1 cut(s) 284
BseGI GGATG 1 cut(s) 514
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMII CTCAG 1 cut(s) 282
BseXI GCAGC 1 cut(s) 451
BshFI GGCC 3 cut(s) 256, 289, 375
BsiHKAI GWGCWC 1 cut(s) 391
BsiSI CCGG 1 cut(s) 376
BslFI GGGAC 1 cut(s) 294
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 1 cut(s) 16
BsmFI GGGAC 1 cut(s) 294
BsnI GGCC 3 cut(s) 256, 289, 375
Bso31I GGTCTC 1 cut(s) 16
Bsp1286I GDGCHC 1 cut(s) 391
Bsp143I GATC 1 cut(s) 422
BspACI CCGC 2 cut(s) 103, 471
BspANI GGCC 3 cut(s) 256, 289, 375
BspCNI CTCAG 1 cut(s) 283
BspLI GGNNCC 1 cut(s) 282
BspTNI GGTCTC 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 284
BssMI GATC 1 cut(s) 422
Bst2UI CCWGG 1 cut(s) 519
Bst4CI ACNGT 2 cut(s) 212, 330
BstC8I GCNNGC 2 cut(s) 336, 437
BstDEI CTNAG 2 cut(s) 120, 291
BstF5I GGATG 1 cut(s) 514
BstKTI GATC 1 cut(s) 425
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 1 cut(s) 422
BstMWI GCNNNNNNNGC 1 cut(s) 372
BstNI CCWGG 1 cut(s) 519
BstSCI CCNGG 1 cut(s) 517
BstSFI CTRYAG 2 cut(s) 186, 444
BstV1I GCAGC 1 cut(s) 451
BsuI GTATCC 1 cut(s) 509
BsuRI GGCC 3 cut(s) 256, 289, 375
BtsCI GGATG 1 cut(s) 514
BtsIMutI CAGTG 2 cut(s) 217, 335
Cac8I GCNNGC 2 cut(s) 336, 437
Cfr13I GGNCC 1 cut(s) 281
Csp6I GTAC 1 cut(s) 345
CviAII CATG 2 cut(s) 51, 156
CviJI RGCY 9 cut(s) 153, 192, 256, 289, 295, 338, 375, 442, 491
CviKI_1 RGCY 9 cut(s) 153, 192, 256, 289, 295, 338, 375, 442, 491
CviQI GTAC 1 cut(s) 345
DdeI CTNAG 2 cut(s) 120, 291
DpnI GATC 1 cut(s) 424
DpnII GATC 1 cut(s) 422
DrdI GACNNNNNNGTC 1 cut(s) 136
DseDI GACNNNNNNGTC 1 cut(s) 136
Eco147I AGGCCT 2 cut(s) 256, 289
Eco31I GGTCTC 1 cut(s) 16
Eco47I GGWCC 1 cut(s) 281
EcoRII CCWGG 1 cut(s) 517
FaeI CATG 2 cut(s) 54, 159
FaiI YATR 8 cut(s) 52, 128, 134, 157, 168, 176, 181, 457
FaqI GGGAC 1 cut(s) 294
FatI CATG 2 cut(s) 50, 155
Fnu4HI GCNGC 1 cut(s) 440
FokI GGATG 1 cut(s) 501
Fsp4HI GCNGC 1 cut(s) 440
FspBI CTAG 4 cut(s) 296, 359, 462, 488
GluI GCNGC 1 cut(s) 440
HaeIII GGCC 3 cut(s) 256, 289, 375
HapII CCGG 1 cut(s) 376
Hin1II CATG 2 cut(s) 54, 159
HindIII AAGCTT 1 cut(s) 336
HinfI GANTC 3 cut(s) 116, 452, 479
HpaII CCGG 1 cut(s) 376
HphI GGTGA 1 cut(s) 188
Hpy188I TCNGA 1 cut(s) 62
HpyAV CCTTC 2 cut(s) 57, 140
HpyCH4III ACNGT 2 cut(s) 212, 330
HpyCH4V TGCA 4 cut(s) 203, 351, 366, 439
HpyF10VI GCNNNNNNNGC 1 cut(s) 372
HpyF3I CTNAG 2 cut(s) 120, 291
Hsp92II CATG 2 cut(s) 54, 159
Kzo9I GATC 1 cut(s) 422
Lsp1109I GCAGC 1 cut(s) 451
MaeI CTAG 4 cut(s) 296, 359, 462, 488
MaeIII GTNAC 3 cut(s) 219, 354, 397
MalI GATC 1 cut(s) 424
MboI GATC 1 cut(s) 422
MboII GAAGA 1 cut(s) 17
MfeI CAATTG 2 cut(s) 141, 382
MhlI GDGCHC 1 cut(s) 391
MluCI AATT 7 cut(s) 98, 141, 163, 306, 367, 382, 402
MlyI GAGTC 2 cut(s) 125, 473
MnlI CCTC 4 cut(s) 36, 208, 279, 402
MseI TTAA 2 cut(s) 315, 405
MspI CCGG 1 cut(s) 376
MspR9I CCNGG 1 cut(s) 519
MunI CAATTG 2 cut(s) 141, 382
MvaI CCWGG 1 cut(s) 519
MwoI GCNNNNNNNGC 1 cut(s) 372
NdeII GATC 1 cut(s) 422
NlaIII CATG 2 cut(s) 54, 159
NlaIV GGNNCC 1 cut(s) 282
PceI AGGCCT 2 cut(s) 256, 289
PfeI GAWTC 1 cut(s) 452
PfoI TCCNGGA 1 cut(s) 517
PkrI GCNGC 1 cut(s) 441
PleI GAGTC 2 cut(s) 124, 473
PpsI GAGTC 2 cut(s) 124, 473
Psp6I CCWGG 1 cut(s) 517
PspGI CCWGG 1 cut(s) 517
PspN4I GGNNCC 1 cut(s) 282
PspPI GGNCC 1 cut(s) 281
RsaI GTAC 1 cut(s) 346
RsaNI GTAC 1 cut(s) 345
SaqAI TTAA 2 cut(s) 315, 405
SatI GCNGC 1 cut(s) 440
Sau3AI GATC 1 cut(s) 422
Sau96I GGNCC 1 cut(s) 281
ScaI AGTACT 1 cut(s) 346
SchI GAGTC 2 cut(s) 125, 473
ScrFI CCNGG 1 cut(s) 519
SduI GDGCHC 1 cut(s) 391
SetI ASST 6 cut(s) 155, 219, 297, 340, 397, 493
SfcI CTRYAG 2 cut(s) 186, 444
SinI GGWCC 1 cut(s) 281
Sse9I AATT 7 cut(s) 98, 141, 163, 306, 367, 382, 402
SseBI AGGCCT 2 cut(s) 256, 289
SsiI CCGC 2 cut(s) 103, 471
SspMI CTAG 4 cut(s) 296, 359, 462, 488
StuI AGGCCT 2 cut(s) 256, 289
StyD4I CCNGG 1 cut(s) 517
TaaI ACNGT 2 cut(s) 212, 330
TaqII GACCGA 1 cut(s) 298
TasI AATT 7 cut(s) 98, 141, 163, 306, 367, 382, 402
TatI WGTACW 1 cut(s) 344
TfiI GAWTC 1 cut(s) 452
Tru1I TTAA 2 cut(s) 315, 405
Tru9I TTAA 2 cut(s) 315, 405
TscAI CASTG 2 cut(s) 217, 335
TseI GCWGC 1 cut(s) 439
TspDTI ATGAA 3 cut(s) 39, 444, 503
TspRI CASTG 2 cut(s) 217, 335
VpaK11BI GGWCC 1 cut(s) 281
XapI RAATTY 1 cut(s) 98
XspI CTAG 4 cut(s) 296, 359, 462, 488
ZrmI AGTACT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.