Rorug04G0120200

Xyloglucan galactosyltransferase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
19027100 .. 19027402
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0120200.1

Sequence Viewer

Length: 303 bp
ATGTTTTGGGTGGCTGTGGAGAGAGAGTGGTTTGTATTTGTTGGGACTGTCGCTGGTTTATGGTTACTATCTCGTGTAGGGAGATACTTTGATCTGCTCACCCTTCTTTACACAGGTGCTGTTATGGGCATGACTATTCATGTGATATATGTGAGGTACAAGGAAAATCTCAAGAGGAATGAGGAGTGGGTGAAGGCAGAGGCAAGAAGGTACTATGACATGCTAGATGAAAAGGTAGTCAAGAATATGAAGAACAAGGTGACAGTCACCACTGAGAATTATAAGGACAAGAAAGTTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

100

Amino Acids

12.02

Weight (kDa)

9.33

Isoelectric Point (pI)

20.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Reticulon PF02453 4 - 58 6.6e-12 Reticulon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 282
AfaI GTAC 2 cut(s) 158, 212
AlwNI CAGNNNCTG 1 cut(s) 119
AsuHPI GGTGA 4 cut(s) 91, 202, 259, 271
BauI CACGAG 1 cut(s) 72
BfaI CTAG 1 cut(s) 224
BpuEI CTTGAG 1 cut(s) 155
BsaXI ACNNNNNCTCC 2 cut(s) 11, 41
BseMII CTCAG 1 cut(s) 264
BseRI GAGGAG 1 cut(s) 197
BslFI GGGAC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 58
Bsp143I GATC 1 cut(s) 91
BspCNI CTCAG 1 cut(s) 265
BssMI GATC 1 cut(s) 91
BssSI CACGAG 1 cut(s) 72
Bst2BI CACGAG 1 cut(s) 72
Bst4CI ACNGT 2 cut(s) 49, 265
BstDEI CTNAG 1 cut(s) 273
BstKTI GATC 1 cut(s) 94
BstMBI GATC 1 cut(s) 91
BstNSI RCATGY 1 cut(s) 223
BtsIMutI CAGTG 1 cut(s) 270
CaiI CAGNNNCTG 1 cut(s) 119
Csp6I GTAC 2 cut(s) 157, 211
CviAII CATG 3 cut(s) 130, 140, 220
CviJI RGCY 1 cut(s) 14
CviKI_1 RGCY 1 cut(s) 14
CviQI GTAC 2 cut(s) 157, 211
DdeI CTNAG 1 cut(s) 273
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
FaeI CATG 3 cut(s) 133, 143, 223
FaqI GGGAC 1 cut(s) 58
FatI CATG 3 cut(s) 129, 139, 219
FspBI CTAG 1 cut(s) 224
Hin1II CATG 3 cut(s) 133, 143, 223
HphI GGTGA 4 cut(s) 91, 202, 259, 271
Hpy188III TCNNGA 2 cut(s) 172, 241
HpyAV CCTTC 3 cut(s) 113, 187, 201
HpyCH4III ACNGT 2 cut(s) 49, 265
HpyF3I CTNAG 1 cut(s) 273
Hsp92II CATG 3 cut(s) 133, 143, 223
Kzo9I GATC 1 cut(s) 91
LpnPI CCDG 2 cut(s) 39, 99
MaeI CTAG 1 cut(s) 224
MaeIII GTNAC 3 cut(s) 63, 259, 265
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MboII GAAGA 1 cut(s) 262
MluCI AATT 1 cut(s) 277
MnlI CCTC 4 cut(s) 147, 168, 175, 193
NdeII GATC 1 cut(s) 91
NlaIII CATG 3 cut(s) 133, 143, 223
NmuCI GTSAC 2 cut(s) 259, 265
NspI RCATGY 1 cut(s) 223
PsiI TTATAA 1 cut(s) 282
PstNI CAGNNNCTG 1 cut(s) 119
RsaI GTAC 2 cut(s) 158, 212
RsaNI GTAC 2 cut(s) 157, 211
Sau3AI GATC 1 cut(s) 91
SetI ASST 5 cut(s) 118, 158, 212, 237, 261
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 1 cut(s) 277
SspMI CTAG 1 cut(s) 224
TaaI ACNGT 2 cut(s) 49, 265
TasI AATT 1 cut(s) 277
TscAI CASTG 1 cut(s) 277
TseFI GTSAC 2 cut(s) 259, 265
Tsp45I GTSAC 2 cut(s) 259, 265
TspDTI ATGAA 3 cut(s) 128, 243, 263
TspRI CASTG 1 cut(s) 277
XceI RCATGY 1 cut(s) 223
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.