Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000894

Physical Location & Seq

Genomic Coordinates Reverse (-)

21092078 .. 21092814

Gene Structure 737 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56029

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGTGGGGCAGAGACCATTTCATGGTGACTGGCCGGACTTCTTGGGATTTCAGGAGGACTAACGACAATGCGGAATGGCCATGGGGCAGTGGTCTTAGGTTCTTACCAGAGTCAAATAACATGAGTATGCTTTCGGTAGAAGGAAGCTTGTGGAAAAATGACTTTGCTATTCCATACCCCACGAACTTTCATCCAGCAAAGGATAGTGAGATTATCCAGTGGCAAAACAGAATGAGATATCCAGAGAGGCCTTACTTGTTTTCTTTTATTGGAGCGCCAAGGCCTGGCATGGAGAAATCTATCAGGGGGAACTTATTGATCAGTGCCGAGCTTCAACCTCCAGGGGATTCACACACTAGGAGATCAGCTTTCGACTCTATGCTGGGCTTGCTGGCTGGTTGTATTCCTGTTTTCTTCCATCCAGGTTCAGCTTATAACCAATATTTATGGCATCTACCAAAGAATCATAGCAGATATTTGGTGTTTATCCCCGCAAAGAATGTGACTGATTTGAAAGAAGTCTCTATTGAGAAACTTTTGCTTGGAATTTCAAAGGAGGAAATTATCAATGAGAAAGAAGGTTATAAAGCTAAAACCAAAGCTGGTATATGCAGATCCCAGGTCAAGACTGGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

212

Amino Acids

24.34

Weight (kDa)

9.2

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exostosin_GT47	PF03016	3 - 106	1.6e-18	Exostosin GT47 domain
Exostosin_GT47	PF03016	111 - 174	1.6e-11	Exostosin GT47 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13990 AT4G13990
fragaria_vesca	FvH4_4g13210 FvH4_4g13212 FvH4_4g13213 FvH4_4g13214 FvH4_4g13214 FvH4_4g13214
malus_domestica	MD00G1064500.v1.1 MD00G1064600.v1.1 MD04G1017500.v1.1 MD04G1017600.v1.1 MD04G1017700.v1.1 MD04G1017900.v1.1
prunus_persica	Prupe.1G165700_v2.0.a1 Prupe.1G165800_v2.0.a1 Prupe.1G166100_v2.0.a1 Prupe.1G166200_v2.0.a1 Prupe.1G166300_v2.0.a1 Prupe.1G166600_v2.0.a1
pyrus_communis	pycom04g01400 pycom04g01410 pycom420g00900 pycom420g00910
rosa_chinensis	RchiOBHm_Chr1g0331261 RchiOBHm_Chr4g0413361 RchiOBHm_Chr4g0413371 RchiOBHm_Chr4g0413411
rosa_laevigata	RLG00000008220 RLG00000008221 RLG00000008222 RLG00000008223
rosa_multiflora	Rmu_sc0005828.1_g000002 Rmu_sc0007671.1_g000003 Rmu_sc0007671.1_g000004 Rmu_sc0007671.1_g000007 Rmu_sc0007671.1_g000010 Rmu_sc0009573.1_g000011 Rmu_sc0009573.1_g000012
rosa_roxburghii	Rroxscaffold_5G00357290 Rroxscaffold_5G00357300 Rroxscaffold_5G00357320
rosa_rugosa	Rorug04G0120200 Rorug04G0120300 Rorug04G0120400 Rorug04G0120500
rosa_samantha	Rh1AG117000 Rh4AG179600 Rh4AG179700 Rh4AG179800 Rh4BG178700 Rh4BG178800 Rh4BG178900 Rh4CG190200 Rh4CG190400 Rh4CG190500 Rh4CG190600 Rh4CG190700 Rh4DG174600 Rh4DG174700 Rh4DG174900
rosa_wichuraiana	Rw4G014930 Rw4G014940 Rw4G014960 Rw4G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	435, 585
AccB7I	CCANNNNNTGG	2 cut(s)	22, 284
AciI	CCGC	2 cut(s)	71, 492
AclWI	GGATC	1 cut(s)	609
AcoI	YGGCCR	2 cut(s)	31, 77
AcsI	RAATTY	1 cut(s)	546
AfiI	CCNNNNNNNGG	2 cut(s)	22, 284
AgsI	TTSAA	3 cut(s)	335, 514, 552
AjnI	CCWGG	4 cut(s)	283, 340, 421, 618
AluBI	AGCT	6 cut(s)	147, 331, 368, 431, 590, 602
AluI	AGCT	6 cut(s)	147, 331, 368, 431, 590, 602
Alw26I	GTCTC	2 cut(s)	6, 526
AlwI	GGATC	1 cut(s)	609
AoxI	GGCC	4 cut(s)	31, 77, 248, 281
ApoI	RAATTY	1 cut(s)	546
AspLEI	GCGC	1 cut(s)	277
AsuHPI	GGTGA	1 cut(s)	37
BalI	TGGCCA	1 cut(s)	79
BccI	CCATC	1 cut(s)	426
BciT130I	CCWGG	4 cut(s)	285, 342, 423, 620
BclI	TGATCA	1 cut(s)	318
BcoDI	GTCTC	2 cut(s)	6, 526
BfaI	CTAG	1 cut(s)	357
BfoI	RGCGCY	1 cut(s)	278
Bme1390I	CCNGG	4 cut(s)	285, 342, 423, 620
BmrFI	CCNGG	4 cut(s)	285, 342, 423, 620
BmrI	ACTGGG	1 cut(s)	639
BmsI	GCATC	1 cut(s)	460
BmuI	ACTGGG	1 cut(s)	639
BpmI	CTGGAG	1 cut(s)	324
BsaI	GGTCTC	1 cut(s)	6
BsaJI	CCNNGG	4 cut(s)	80, 278, 341, 618
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 284
Bse1I	ACTGG	3 cut(s)	34, 217, 634
BseBI	CCWGG	4 cut(s)	285, 342, 423, 620
BseDI	CCNNGG	4 cut(s)	80, 278, 341, 618
BseGI	GGATG	2 cut(s)	190, 418
BseLI	CCNNNNNNNGG	2 cut(s)	22, 284
BseNI	ACTGG	3 cut(s)	34, 217, 634
BseYI	CCCAGC	1 cut(s)	382
BshFI	GGCC	4 cut(s)	33, 79, 250, 283
BsiSI	CCGG	1 cut(s)	34
BslI	CCNNNNNNNGG	2 cut(s)	22, 284
BsmAI	GTCTC	2 cut(s)	6, 526
BsnI	GGCC	4 cut(s)	33, 79, 250, 283
Bso31I	GGTCTC	1 cut(s)	6
Bsp143I	GATC	3 cut(s)	318, 362, 614
Bsp19I	CCATGG	1 cut(s)	80
BspACI	CCGC	2 cut(s)	71, 492
BspANI	GGCC	4 cut(s)	33, 79, 250, 283
BspPI	GGATC	1 cut(s)	609
BspTNI	GGTCTC	1 cut(s)	6
BsrI	ACTGG	3 cut(s)	34, 217, 634
BssECI	CCNNGG	4 cut(s)	80, 278, 341, 618
BssMI	GATC	3 cut(s)	318, 362, 614
BssT1I	CCWWGG	2 cut(s)	80, 278
Bst2UI	CCWGG	4 cut(s)	285, 342, 423, 620
BstC8I	GCNNGC	2 cut(s)	389, 393
BstDEI	CTNAG	1 cut(s)	95
BstDSI	CCRYGG	1 cut(s)	80
BstF5I	GGATG	2 cut(s)	190, 418
BstH2I	RGCGCY	1 cut(s)	278
BstHHI	GCGC	1 cut(s)	277
BstKTI	GATC	3 cut(s)	321, 365, 617
BstMAI	GTCTC	2 cut(s)	6, 526
BstMBI	GATC	3 cut(s)	318, 362, 614
BstMWI	GCNNNNNNNGC	1 cut(s)	388
BstNI	CCWGG	4 cut(s)	285, 342, 423, 620
BstSCI	CCNGG	4 cut(s)	283, 340, 421, 618
BstX2I	RGATCY	1 cut(s)	614
BstYI	RGATCY	1 cut(s)	614
BsuRI	GGCC	4 cut(s)	33, 79, 250, 283
BtgI	CCRYGG	1 cut(s)	80
BtsCI	GGATG	2 cut(s)	190, 418
BtsI	GCAGTG	1 cut(s)	94
BtsIMutI	CAGTG	3 cut(s)	94, 224, 328
Cac8I	GCNNGC	2 cut(s)	389, 393
CfoI	GCGC	1 cut(s)	277
CviAII	CATG	4 cut(s)	22, 81, 121, 289
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	3 cut(s)	320, 364, 616
DpnII	GATC	3 cut(s)	318, 362, 614
EaeI	YGGCCR	2 cut(s)	31, 77
Eco130I	CCWWGG	2 cut(s)	80, 278
Eco147I	AGGCCT	2 cut(s)	250, 283
Eco31I	GGTCTC	1 cut(s)	6
Eco32I	GATATC	1 cut(s)	239
EcoRII	CCWGG	4 cut(s)	283, 340, 421, 618
EcoRV	GATATC	1 cut(s)	239
EcoT14I	CCWWGG	2 cut(s)	80, 278
ErhI	CCWWGG	2 cut(s)	80, 278
FaeI	CATG	4 cut(s)	25, 84, 124, 292
FatI	CATG	4 cut(s)	21, 80, 120, 288
FauI	CCCGC	1 cut(s)	499
FbaI	TGATCA	1 cut(s)	318
FokI	GGATG	2 cut(s)	177, 405
FspBI	CTAG	1 cut(s)	357
GlaI	GCGC	1 cut(s)	276
GsaI	CCCAGC	1 cut(s)	386
GsuI	CTGGAG	1 cut(s)	324
HaeII	RGCGCY	1 cut(s)	278
HaeIII	GGCC	4 cut(s)	33, 79, 250, 283
HapII	CCGG	1 cut(s)	34
HhaI	GCGC	1 cut(s)	277
Hin1II	CATG	4 cut(s)	25, 84, 124, 292
Hin6I	GCGC	1 cut(s)	275
HinP1I	GCGC	1 cut(s)	275
HindIII	AAGCTT	1 cut(s)	145
HinfI	GANTC	4 cut(s)	110, 347, 374, 463
HpaII	CCGG	1 cut(s)	34
HphI	GGTGA	1 cut(s)	37
Hpy188III	TCNNGA	3 cut(s)	52, 242, 625
HpyAV	CCTTC	2 cut(s)	134, 572
HpyCH4V	TGCA	1 cut(s)	612
HpyF10VI	GCNNNNNNNGC	1 cut(s)	388
HpyF3I	CTNAG	1 cut(s)	95
Hsp92II	CATG	4 cut(s)	25, 84, 124, 292
HspAI	GCGC	1 cut(s)	275
Ksp22I	TGATCA	1 cut(s)	318
Kzo9I	GATC	3 cut(s)	318, 362, 614
LmnI	GCTCC	1 cut(s)	272
LweI	GCATC	1 cut(s)	460
MaeI	CTAG	1 cut(s)	357
MaeIII	GTNAC	2 cut(s)	25, 502
MalI	GATC	3 cut(s)	320, 364, 616
MboI	GATC	3 cut(s)	318, 362, 614
MboII	GAAGA	1 cut(s)	406
MflI	RGATCY	1 cut(s)	614
MlsI	TGGCCA	1 cut(s)	79
MluCI	AATT	2 cut(s)	546, 561
MluNI	TGGCCA	1 cut(s)	79
MlyI	GAGTC	2 cut(s)	119, 368
MnlI	CCTC	4 cut(s)	48, 240, 348, 550
Mox20I	TGGCCA	1 cut(s)	79
MscI	TGGCCA	1 cut(s)	79
MslI	CAYNNNNRTG	1 cut(s)	125
Msp20I	TGGCCA	1 cut(s)	79
MspI	CCGG	1 cut(s)	34
MspR9I	CCNGG	4 cut(s)	285, 342, 423, 620
MvaI	CCWGG	4 cut(s)	285, 342, 423, 620
MwoI	GCNNNNNNNGC	1 cut(s)	388
NcoI	CCATGG	1 cut(s)	80
NdeII	GATC	3 cut(s)	318, 362, 614
NlaIII	CATG	4 cut(s)	25, 84, 124, 292
NmeAIII	GCCGAG	1 cut(s)	352
NmuCI	GTSAC	2 cut(s)	25, 502
PceI	AGGCCT	2 cut(s)	250, 283
PfeI	GAWTC	2 cut(s)	347, 463
PflMI	CCANNNNNTGG	2 cut(s)	22, 284
PleI	GAGTC	2 cut(s)	118, 368
PpsI	GAGTC	2 cut(s)	118, 368
PsiI	TTATAA	2 cut(s)	435, 585
Psp6I	CCWGG	4 cut(s)	283, 340, 421, 618
PspFI	CCCAGC	1 cut(s)	382
PspGI	CCWGG	4 cut(s)	283, 340, 421, 618
PsuI	RGATCY	1 cut(s)	614
RseI	CAYNNNNRTG	1 cut(s)	125
Sau3AI	GATC	3 cut(s)	318, 362, 614
SchI	GAGTC	2 cut(s)	119, 368
ScrFI	CCNGG	4 cut(s)	285, 342, 423, 620
SfaNI	GCATC	1 cut(s)	460
SmiMI	CAYNNNNRTG	1 cut(s)	125
Sse9I	AATT	2 cut(s)	546, 561
SseBI	AGGCCT	2 cut(s)	250, 283
SsiI	CCGC	2 cut(s)	71, 492
SspI	AATATT	1 cut(s)	443
SspMI	CTAG	1 cut(s)	357
StuI	AGGCCT	2 cut(s)	250, 283
StyD4I	CCNGG	4 cut(s)	283, 340, 421, 618
StyI	CCWWGG	2 cut(s)	80, 278
TaqI	TCGA	1 cut(s)	372
TasI	AATT	2 cut(s)	546, 561
TfiI	GAWTC	2 cut(s)	347, 463
TscAI	CASTG	3 cut(s)	94, 224, 328
TseFI	GTSAC	2 cut(s)	25, 502
Tsp45I	GTSAC	2 cut(s)	25, 502
TspDTI	ATGAA	2 cut(s)	10, 179
TspRI	CASTG	3 cut(s)	94, 224, 328
Van91I	CCANNNNNTGG	2 cut(s)	22, 284
XapI	RAATTY	1 cut(s)	546
XcmI	CCANNNNNNNNNTGG	1 cut(s)	626
XspI	CTAG	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.