RLG00000008221

Xyloglucan galactosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000894
Physical Location & Seq
Forward (+)
27344270 .. 27349274
5005 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008221

Sequence Viewer

Length: 786 bp
ATGTGGAGTAACCAGTTTTCATTAGATGTCATATTCCACAACAAGATGAAGCAGTATGAGTGCTTGACAAAAAACTCCACGCTGGCTTCGGCCATTTATATACCAATTTATGCTGGCCTCGTGGACAGTCTCCATTTGTGGGATCCCAACCTCACTGCAACAGACTCTTTCAGTTTAGACCTTGTTAAGTGGGTCTCGAGAAGACCCGAATGGAAGAAAATGTGGGACAGAGACCATTTCTTTTTTGATGGGAGGATTTCATGGGATTTCAGAAGGAAAACAGACAACAATACTGATTGTGGTAGTAAATGCCACTTCTTGCCAGAGTCCAAGAATATGACTATGTTGTCAATTGAAGGAAGCTCATGGACAAATGATATTGCTATACCATACCCTACATGCTTTCACCCTGCAAAGGATAGTAGCGCTTACACCCAATACTTATGGCATCTGCCAAAGAATCACACCAAGTATTCGGTGTTTATTCCGGTTAAGGATGCAACTGATTTGAATGAAGTCAGCATTGAGAAAACCTTGCTCGGAATCTCAAGGGCCAAGGAACTAGCAATGAGAGAGGAGTTTATACGGCTTATACCAAACCTGGTGTATTCAGATCCCATGTCAACATTAGAGACCCCGGATGCATTTGATATAGCGGTCAAAAGAATTCGCGAGAGGATTGAAAATGTTAGGAAGGTGAGTAGAGAAGGGAAGGATCCTATTATTGGATTTACAGAGGAGGAGGGTAACAAGTACAAATTCAATGTGTCAAGAGAAAAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

262

Amino Acids

30.52

Weight (kDa)

7.05

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 4 - 137 4e-25 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 346
AccII CGCG 1 cut(s) 672
AciI CCGC 1 cut(s) 656
AclWI GGATC 5 cut(s) 137, 150, 608, 710, 723
AcoI YGGCCR 1 cut(s) 90
AcsI RAATTY 2 cut(s) 666, 758
AfaI GTAC 1 cut(s) 755
AfeI AGCGCT 1 cut(s) 427
AfiI CCNNNNNNNGG 3 cut(s) 139, 415, 725
AgsI TTSAA 4 cut(s) 356, 511, 683, 763
AjnI CCWGG 1 cut(s) 600
AluBI AGCT 1 cut(s) 363
AluI AGCT 1 cut(s) 363
Alw26I GTCTC 4 cut(s) 134, 199, 225, 626
AlwI GGATC 5 cut(s) 137, 150, 608, 710, 723
Ama87I CYCGRG 1 cut(s) 196
Aor51HI AGCGCT 1 cut(s) 427
AoxI GGCC 3 cut(s) 90, 115, 552
ApoI RAATTY 2 cut(s) 666, 758
AspLEI GCGC 1 cut(s) 428
AspS9I GGNCC 1 cut(s) 552
AsuC2I CCSGG 1 cut(s) 638
AsuHPI GGTGA 2 cut(s) 398, 709
AvaI CYCGRG 1 cut(s) 196
BamHI GGATCC 2 cut(s) 142, 715
BauI CACGAG 1 cut(s) 119
BbsI GAAGAC 1 cut(s) 208
BccI CCATC 1 cut(s) 242
BceAI ACGGC 1 cut(s) 602
BciT130I CCWGG 1 cut(s) 602
BcnI CCSGG 1 cut(s) 638
BcoDI GTCTC 4 cut(s) 134, 199, 225, 626
BfaI CTAG 1 cut(s) 563
BfoI RGCGCY 1 cut(s) 429
Bme1390I CCNGG 2 cut(s) 602, 638
BmeT110I CYCGRG 1 cut(s) 196
BmgT120I GGNCC 1 cut(s) 552
BmiI GGNNCC 2 cut(s) 144, 717
BmrFI CCNGG 2 cut(s) 602, 638
BmsI GCATC 3 cut(s) 457, 487, 631
BpiI GAAGAC 1 cut(s) 208
BpuEI CTTGAG 1 cut(s) 532
BpuMI CCSGG 1 cut(s) 638
BsaI GGTCTC 3 cut(s) 199, 225, 626
BsaJI CCNNGG 2 cut(s) 555, 636
BsaWI WCCGGW 1 cut(s) 487
Bsc4I CCNNNNNNNGG 3 cut(s) 139, 415, 725
Bse1I ACTGG 1 cut(s) 13
Bse3DI GCAATG 1 cut(s) 573
BseBI CCWGG 1 cut(s) 602
BseDI CCNNGG 2 cut(s) 555, 636
BseGI GGATG 2 cut(s) 502, 646
BseLI CCNNNNNNNGG 3 cut(s) 139, 415, 725
BseMI GCAATG 1 cut(s) 573
BseNI ACTGG 1 cut(s) 13
BseRI GAGGAG 3 cut(s) 590, 752, 755
Bsh1236I CGCG 1 cut(s) 672
BshFI GGCC 3 cut(s) 92, 117, 554
BsiHKCI CYCGRG 1 cut(s) 196
BsiSI CCGG 2 cut(s) 488, 638
BslFI GGGAC 1 cut(s) 239
BslI CCNNNNNNNGG 3 cut(s) 139, 415, 725
BsmAI GTCTC 4 cut(s) 134, 199, 225, 626
BsmFI GGGAC 1 cut(s) 239
BsnI GGCC 3 cut(s) 92, 117, 554
Bso31I GGTCTC 3 cut(s) 199, 225, 626
BsoBI CYCGRG 1 cut(s) 196
Bsp143I GATC 3 cut(s) 142, 613, 715
Bsp68I TCGCGA 1 cut(s) 672
BspACI CCGC 1 cut(s) 656
BspANI GGCC 3 cut(s) 92, 117, 554
BspFNI CGCG 1 cut(s) 672
BspLI GGNNCC 2 cut(s) 144, 717
BspPI GGATC 5 cut(s) 137, 150, 608, 710, 723
BspTNI GGTCTC 3 cut(s) 199, 225, 626
BsrDI GCAATG 1 cut(s) 573
BsrI ACTGG 1 cut(s) 13
BssECI CCNNGG 2 cut(s) 555, 636
BssMI GATC 3 cut(s) 142, 613, 715
BssSI CACGAG 1 cut(s) 119
BssT1I CCWWGG 1 cut(s) 555
Bst2BI CACGAG 1 cut(s) 119
Bst2UI CCWGG 1 cut(s) 602
Bst4CI ACNGT 1 cut(s) 128
BstC8I GCNNGC 2 cut(s) 84, 115
BstF5I GGATG 2 cut(s) 502, 646
BstFNI CGCG 1 cut(s) 672
BstH2I RGCGCY 1 cut(s) 429
BstHHI GCGC 1 cut(s) 428
BstKTI GATC 3 cut(s) 145, 616, 718
BstMAI GTCTC 4 cut(s) 134, 199, 225, 626
BstMBI GATC 3 cut(s) 142, 613, 715
BstNI CCWGG 1 cut(s) 602
BstNSI RCATGY 1 cut(s) 402
BstSCI CCNGG 2 cut(s) 600, 636
BstUI CGCG 1 cut(s) 672
BstV2I GAAGAC 1 cut(s) 208
BstX2I RGATCY 3 cut(s) 142, 613, 715
BstYI RGATCY 3 cut(s) 142, 613, 715
BsuRI GGCC 3 cut(s) 92, 117, 554
BtsCI GGATG 2 cut(s) 502, 646
BtsI GCAGTG 1 cut(s) 153
BtsIMutI CAGTG 1 cut(s) 153
BtuMI TCGCGA 1 cut(s) 672
Cac8I GCNNGC 2 cut(s) 84, 115
CfoI GCGC 1 cut(s) 428
Cfr13I GGNCC 1 cut(s) 552
CsiI ACCWGGT 1 cut(s) 600
Csp6I GTAC 1 cut(s) 754
CviAII CATG 4 cut(s) 261, 366, 399, 619
CviJI RGCY 6 cut(s) 86, 92, 117, 363, 554, 589
CviKI_1 RGCY 6 cut(s) 86, 92, 117, 363, 554, 589
CviQI GTAC 1 cut(s) 754
DpnI GATC 3 cut(s) 144, 615, 717
DpnII GATC 3 cut(s) 142, 613, 715
DrdI GACNNNNNNGTC 1 cut(s) 346
DseDI GACNNNNNNGTC 1 cut(s) 346
EaeI YGGCCR 1 cut(s) 90
Eco130I CCWWGG 1 cut(s) 555
Eco31I GGTCTC 3 cut(s) 199, 225, 626
Eco47III AGCGCT 1 cut(s) 427
Eco88I CYCGRG 1 cut(s) 196
EcoRI GAATTC 1 cut(s) 666
EcoRII CCWGG 1 cut(s) 600
EcoT14I CCWWGG 1 cut(s) 555
EcoT22I ATGCAT 1 cut(s) 646
ErhI CCWWGG 1 cut(s) 555
FaeI CATG 4 cut(s) 264, 369, 402, 622
FaqI GGGAC 1 cut(s) 239
FatI CATG 4 cut(s) 260, 365, 398, 618
FokI GGATG 2 cut(s) 509, 653
FspBI CTAG 1 cut(s) 563
GlaI GCGC 1 cut(s) 427
HaeII RGCGCY 1 cut(s) 429
HaeIII GGCC 3 cut(s) 92, 117, 554
HapII CCGG 2 cut(s) 488, 638
HhaI GCGC 1 cut(s) 428
Hin1II CATG 4 cut(s) 264, 369, 402, 622
Hin6I GCGC 1 cut(s) 426
HinP1I GCGC 1 cut(s) 426
HincII GTYRAC 1 cut(s) 624
HindII GTYRAC 1 cut(s) 624
HinfI GANTC 4 cut(s) 164, 326, 460, 543
HpaII CCGG 2 cut(s) 488, 638
HphI GGTGA 2 cut(s) 398, 709
Hpy166II GTNNAC 2 cut(s) 124, 624
Hpy188I TCNGA 3 cut(s) 272, 542, 613
Hpy188III TCNNGA 4 cut(s) 196, 198, 671, 771
Hpy8I GTNNAC 2 cut(s) 124, 624
HpyAV CCTTC 5 cut(s) 267, 350, 688, 701, 706
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4V TGCA 4 cut(s) 158, 413, 500, 644
Hsp92II CATG 4 cut(s) 264, 369, 402, 622
HspAI GCGC 1 cut(s) 426
Kzo9I GATC 3 cut(s) 142, 613, 715
LpnPI CCDG 9 cut(s) 26, 68, 99, 336, 423, 501, 587, 614, 651
LweI GCATC 3 cut(s) 457, 487, 631
MabI ACCWGGT 1 cut(s) 600
MaeI CTAG 1 cut(s) 563
MaeIII GTNAC 2 cut(s) 8, 746
MalI GATC 3 cut(s) 144, 615, 717
MboI GATC 3 cut(s) 142, 613, 715
MboII GAAGA 2 cut(s) 213, 226
MfeI CAATTG 1 cut(s) 351
MflI RGATCY 3 cut(s) 142, 613, 715
MluCI AATT 5 cut(s) 105, 351, 666, 758, 781
MlyI GAGTC 2 cut(s) 158, 335
MnlI CCTC 8 cut(s) 128, 161, 246, 568, 669, 730, 733, 736
Mph1103I ATGCAT 1 cut(s) 646
MseI TTAA 2 cut(s) 186, 492
MspI CCGG 2 cut(s) 488, 638
MspR9I CCNGG 2 cut(s) 602, 638
MunI CAATTG 1 cut(s) 351
MvaI CCWGG 1 cut(s) 602
MvnI CGCG 1 cut(s) 672
NciI CCSGG 1 cut(s) 638
NdeII GATC 3 cut(s) 142, 613, 715
NlaIII CATG 4 cut(s) 264, 369, 402, 622
NlaIV GGNNCC 2 cut(s) 144, 717
NruI TCGCGA 1 cut(s) 672
NsiI ATGCAT 1 cut(s) 646
NspI RCATGY 1 cut(s) 402
PaeR7I CTCGAG 1 cut(s) 196
PfeI GAWTC 2 cut(s) 460, 543
PleI GAGTC 2 cut(s) 158, 334
PpsI GAGTC 2 cut(s) 158, 334
Psp6I CCWGG 1 cut(s) 600
PspGI CCWGG 1 cut(s) 600
PspN4I GGNNCC 2 cut(s) 144, 717
PspPI GGNCC 1 cut(s) 552
PsuI RGATCY 3 cut(s) 142, 613, 715
RruI TCGCGA 1 cut(s) 672
RsaI GTAC 1 cut(s) 755
RsaNI GTAC 1 cut(s) 754
SaqAI TTAA 2 cut(s) 186, 492
Sau3AI GATC 3 cut(s) 142, 613, 715
Sau96I GGNCC 1 cut(s) 552
SchI GAGTC 2 cut(s) 158, 335
ScrFI CCNGG 2 cut(s) 602, 638
SetI ASST 6 cut(s) 153, 183, 365, 536, 603, 699
SexAI ACCWGGT 1 cut(s) 600
SfaNI GCATC 3 cut(s) 457, 487, 631
Sfr274I CTCGAG 1 cut(s) 196
SlaI CTCGAG 1 cut(s) 196
SmlI CTYRAG 2 cut(s) 196, 547
SmoI CTYRAG 2 cut(s) 196, 547
Sse9I AATT 5 cut(s) 105, 351, 666, 758, 781
SsiI CCGC 1 cut(s) 656
SspMI CTAG 1 cut(s) 563
StyD4I CCNGG 2 cut(s) 600, 636
StyI CCWWGG 1 cut(s) 555
TaaI ACNGT 1 cut(s) 128
TaqI TCGA 1 cut(s) 197
TasI AATT 5 cut(s) 105, 351, 666, 758, 781
TatI WGTACW 1 cut(s) 753
TfiI GAWTC 2 cut(s) 460, 543
Tru1I TTAA 2 cut(s) 186, 492
Tru9I TTAA 2 cut(s) 186, 492
TscAI CASTG 1 cut(s) 160
TspDTI ATGAA 4 cut(s) 9, 62, 249, 528
TspRI CASTG 1 cut(s) 160
XapI RAATTY 2 cut(s) 666, 758
XceI RCATGY 1 cut(s) 402
XhoI CTCGAG 1 cut(s) 196
XspI CTAG 1 cut(s) 563
Zsp2I ATGCAT 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.