Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000894

Physical Location & Seq

Genomic Coordinates Reverse (-)

41029891 .. 41030583

Gene Structure 693 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG190600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGTGTCCATACTTGGAGAATTTCGGTTTTGGTCCAGAAATAAACAACTCTGAAGGGGTTTTAGCCAACGAAAGTTGGTACTCCACAAACCAGTTCTCATTAGATGTCATATTCCACAACAAGATGAAGCAGTATAAGTGCTTGACAAACAACTCCACTCTGGCTTCGGCCATTTATATACCGATTTATGCTGGCCTCGAGGACAGTCTCCATTTGTGGGATCCCAACCTCACTGCAAGAGACTCTTTCGGTTTTGATTTTGTTAAGTGGGTCTCGAGAAGACCCGAATGGAAGAAAATGTGGGGCAGAGACCATTTCTTTGTTGTTGGGAGGATTTCATGGGATTTTAGAAGGAAAACAGACCACAATACTGATTGGGGTAGTAAATTCCGCTTCTTGCCAGAGTCCAAGAATATGACTATGTTATCAATTGAAGGAAGCTCATGGACAAATGATATTGCTATACCATACCCTACAGGCTTTCACCCTGCAAAGGATAGTGAGGTGTTACAATGGCAGAACAAAATGAGAAAACAAGAAAGGCCTTACTTGTTTGCTTTTGTTGGGGGACCGAGGCCTGAGCTAGAAACTTCAATTCGGGTTAAACTTATTGAACAGTGCCAAGCTTCAAGTACTGGCAAGTTACTAGATTGCAATTCAGAACAATTGAGCTCAAACTGTTACAATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

230

Amino Acids

26.81

Weight (kDa)

6.95

Isoelectric Point (pI)

44.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exostosin_GT47	PF03016	24 - 219	2e-46	Exostosin GT47 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13990 AT4G13990
fragaria_vesca	FvH4_4g13210 FvH4_4g13212 FvH4_4g13213 FvH4_4g13214 FvH4_4g13214 FvH4_4g13214
malus_domestica	MD00G1064500.v1.1 MD00G1064600.v1.1 MD04G1017500.v1.1 MD04G1017600.v1.1 MD04G1017700.v1.1 MD04G1017900.v1.1
prunus_persica	Prupe.1G165700_v2.0.a1 Prupe.1G165800_v2.0.a1 Prupe.1G166100_v2.0.a1 Prupe.1G166200_v2.0.a1 Prupe.1G166300_v2.0.a1 Prupe.1G166600_v2.0.a1
pyrus_communis	pycom04g01400 pycom04g01410 pycom420g00900 pycom420g00910
rosa_chinensis	RchiOBHm_Chr1g0331261 RchiOBHm_Chr4g0413361 RchiOBHm_Chr4g0413371 RchiOBHm_Chr4g0413411
rosa_laevigata	RLG00000008220 RLG00000008221 RLG00000008222 RLG00000008223
rosa_multiflora	Rmu_sc0005828.1_g000002 Rmu_sc0007671.1_g000003 Rmu_sc0007671.1_g000004 Rmu_sc0007671.1_g000007 Rmu_sc0007671.1_g000010 Rmu_sc0009573.1_g000011 Rmu_sc0009573.1_g000012
rosa_roxburghii	Rroxscaffold_5G00357290 Rroxscaffold_5G00357300 Rroxscaffold_5G00357320
rosa_rugosa	Rorug04G0120200 Rorug04G0120300 Rorug04G0120400 Rorug04G0120500
rosa_samantha	Rh1AG117000 Rh4AG179600 Rh4AG179700 Rh4AG179800 Rh4BG178700 Rh4BG178800 Rh4BG178900 Rh4CG190200 Rh4CG190400 Rh4CG190500 Rh4CG190600 Rh4CG190700 Rh4DG174600 Rh4DG174700 Rh4DG174900
rosa_wichuraiana	Rw4G014930 Rw4G014940 Rw4G014960 Rw4G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	197
AciI	CCGC	1 cut(s)	391
AclWI	GGATC	2 cut(s)	215, 228
AcoI	YGGCCR	1 cut(s)	168
AcsI	RAATTY	2 cut(s)	19, 386
AcuI	CTGAAG	1 cut(s)	72
AfaI	GTAC	2 cut(s)	80, 634
AfiI	CCNNNNNNNGG	2 cut(s)	217, 493
AgsI	TTSAA	4 cut(s)	434, 594, 614, 630
AluBI	AGCT	4 cut(s)	441, 583, 626, 672
AluI	AGCT	4 cut(s)	441, 583, 626, 672
Alw21I	GWGCWC	1 cut(s)	674
Alw26I	GTCTC	4 cut(s)	212, 234, 277, 303
AlwI	GGATC	2 cut(s)	215, 228
Ama87I	CYCGRG	2 cut(s)	197, 274
AoxI	GGCC	4 cut(s)	168, 193, 542, 575
ApoI	RAATTY	2 cut(s)	19, 386
ArsI	GACNNNNNNTTYG	2 cut(s)	302, 334
AspS9I	GGNCC	2 cut(s)	32, 569
AsuHPI	GGTGA	1 cut(s)	476
AvaI	CYCGRG	2 cut(s)	197, 274
AvaII	GGWCC	2 cut(s)	32, 569
BamHI	GGATCC	1 cut(s)	220
BanII	GRGCYC	1 cut(s)	674
BbsI	GAAGAC	1 cut(s)	286
Bbv12I	GWGCWC	1 cut(s)	674
BcoDI	GTCTC	4 cut(s)	212, 234, 277, 303
BfaI	CTAG	2 cut(s)	584, 647
BfmI	CTRYAG	1 cut(s)	474
BmcAI	AGTACT	1 cut(s)	634
Bme18I	GGWCC	2 cut(s)	32, 569
BmeT110I	CYCGRG	2 cut(s)	197, 274
BmgT120I	GGNCC	2 cut(s)	32, 569
BmiI	GGNNCC	2 cut(s)	222, 570
BpiI	GAAGAC	1 cut(s)	286
Bpu10I	CCTNAGC	1 cut(s)	579
BsaI	GGTCTC	2 cut(s)	277, 303
BsaJI	CCNNGG	1 cut(s)	572
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 493
Bse1I	ACTGG	2 cut(s)	91, 640
BseDI	CCNNGG	1 cut(s)	572
BseLI	CCNNNNNNNGG	2 cut(s)	217, 493
BseMII	CTCAG	1 cut(s)	570
BseNI	ACTGG	2 cut(s)	91, 640
BshFI	GGCC	4 cut(s)	170, 195, 544, 577
BsiHKAI	GWGCWC	1 cut(s)	674
BsiHKCI	CYCGRG	2 cut(s)	197, 274
BslFI	GGGAC	1 cut(s)	582
BslI	CCNNNNNNNGG	2 cut(s)	217, 493
BsmAI	GTCTC	4 cut(s)	212, 234, 277, 303
BsmFI	GGGAC	1 cut(s)	582
BsnI	GGCC	4 cut(s)	170, 195, 544, 577
Bso31I	GGTCTC	2 cut(s)	277, 303
BsoBI	CYCGRG	2 cut(s)	197, 274
Bsp1286I	GDGCHC	1 cut(s)	674
Bsp143I	GATC	1 cut(s)	220
BspACI	CCGC	1 cut(s)	391
BspANI	GGCC	4 cut(s)	170, 195, 544, 577
BspCNI	CTCAG	1 cut(s)	571
BspLI	GGNNCC	2 cut(s)	222, 570
BspPI	GGATC	2 cut(s)	215, 228
BspTNI	GGTCTC	2 cut(s)	277, 303
BsrI	ACTGG	2 cut(s)	91, 640
BssECI	CCNNGG	1 cut(s)	572
BssMI	GATC	1 cut(s)	220
Bst4CI	ACNGT	3 cut(s)	206, 618, 680
BstC8I	GCNNGC	1 cut(s)	193
BstDEI	CTNAG	1 cut(s)	579
BstKTI	GATC	1 cut(s)	223
BstMAI	GTCTC	4 cut(s)	212, 234, 277, 303
BstMBI	GATC	1 cut(s)	220
BstSFI	CTRYAG	1 cut(s)	474
BstV2I	GAAGAC	1 cut(s)	286
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BsuRI	GGCC	4 cut(s)	170, 195, 544, 577
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	2 cut(s)	231, 623
Cac8I	GCNNGC	1 cut(s)	193
Cfr13I	GGNCC	2 cut(s)	32, 569
Csp6I	GTAC	2 cut(s)	79, 633
CviAII	CATG	2 cut(s)	339, 444
CviQI	GTAC	2 cut(s)	79, 633
DdeI	CTNAG	1 cut(s)	579
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
EaeI	YGGCCR	1 cut(s)	168
Ecl136II	GAGCTC	1 cut(s)	672
Eco147I	AGGCCT	2 cut(s)	544, 577
Eco24I	GRGCYC	1 cut(s)	674
Eco31I	GGTCTC	2 cut(s)	277, 303
Eco47I	GGWCC	2 cut(s)	32, 569
Eco53kI	GAGCTC	1 cut(s)	672
Eco57I	CTGAAG	1 cut(s)	72
Eco88I	CYCGRG	2 cut(s)	197, 274
EcoICRI	GAGCTC	1 cut(s)	672
EcoT38I	GRGCYC	1 cut(s)	674
FaeI	CATG	2 cut(s)	342, 447
FalI	AAGNNNNNCTT	2 cut(s)	229, 261
FaqI	GGGAC	1 cut(s)	582
FatI	CATG	2 cut(s)	338, 443
FriOI	GRGCYC	1 cut(s)	674
FspBI	CTAG	2 cut(s)	584, 647
HaeIII	GGCC	4 cut(s)	170, 195, 544, 577
Hin1II	CATG	2 cut(s)	342, 447
HindIII	AAGCTT	1 cut(s)	624
HinfI	GANTC	2 cut(s)	242, 404
HphI	GGTGA	1 cut(s)	476
Hpy188I	TCNGA	2 cut(s)	52, 661
Hpy188III	TCNNGA	3 cut(s)	35, 274, 276
HpyAV	CCTTC	3 cut(s)	47, 345, 428
HpyCH4III	ACNGT	3 cut(s)	206, 618, 680
HpyCH4V	TGCA	3 cut(s)	236, 491, 654
HpyF3I	CTNAG	1 cut(s)	579
Hsp92II	CATG	2 cut(s)	342, 447
Kzo9I	GATC	1 cut(s)	220
LpnPI	CCDG	9 cut(s)	48, 104, 146, 177, 414, 462, 501, 591, 621
MaeI	CTAG	2 cut(s)	584, 647
MaeIII	GTNAC	3 cut(s)	507, 642, 680
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MboII	GAAGA	2 cut(s)	291, 304
MfeI	CAATTG	2 cut(s)	429, 665
MflI	RGATCY	1 cut(s)	220
MhlI	GDGCHC	1 cut(s)	674
MluCI	AATT	7 cut(s)	19, 386, 429, 594, 655, 665, 685
MlyI	GAGTC	2 cut(s)	236, 413
MnlI	CCTC	6 cut(s)	193, 206, 239, 324, 496, 567
MseI	TTAA	2 cut(s)	264, 603
MunI	CAATTG	2 cut(s)	429, 665
NdeII	GATC	1 cut(s)	220
NlaIII	CATG	2 cut(s)	342, 447
NlaIV	GGNNCC	2 cut(s)	222, 570
PaeR7I	CTCGAG	2 cut(s)	197, 274
PceI	AGGCCT	2 cut(s)	544, 577
PleI	GAGTC	2 cut(s)	236, 412
PpsI	GAGTC	2 cut(s)	236, 412
Psp124BI	GAGCTC	1 cut(s)	674
PspN4I	GGNNCC	2 cut(s)	222, 570
PspPI	GGNCC	2 cut(s)	32, 569
PspXI	VCTCGAGB	1 cut(s)	197
PsuI	RGATCY	1 cut(s)	220
RsaI	GTAC	2 cut(s)	80, 634
RsaNI	GTAC	2 cut(s)	79, 633
SacI	GAGCTC	1 cut(s)	674
SaqAI	TTAA	2 cut(s)	264, 603
Sau3AI	GATC	1 cut(s)	220
Sau96I	GGNCC	2 cut(s)	32, 569
ScaI	AGTACT	1 cut(s)	634
SchI	GAGTC	2 cut(s)	236, 413
SduI	GDGCHC	1 cut(s)	674
SetI	ASST	6 cut(s)	231, 443, 507, 585, 628, 674
SfcI	CTRYAG	1 cut(s)	474
Sfr274I	CTCGAG	2 cut(s)	197, 274
SinI	GGWCC	2 cut(s)	32, 569
SlaI	CTCGAG	2 cut(s)	197, 274
SmlI	CTYRAG	2 cut(s)	197, 274
SmoI	CTYRAG	2 cut(s)	197, 274
Sse9I	AATT	7 cut(s)	19, 386, 429, 594, 655, 665, 685
SseBI	AGGCCT	2 cut(s)	544, 577
SsiI	CCGC	1 cut(s)	391
SspMI	CTAG	2 cut(s)	584, 647
SstI	GAGCTC	1 cut(s)	674
StuI	AGGCCT	2 cut(s)	544, 577
TaaI	ACNGT	3 cut(s)	206, 618, 680
TaqI	TCGA	2 cut(s)	198, 275
TaqII	GACCGA	1 cut(s)	586
TasI	AATT	7 cut(s)	19, 386, 429, 594, 655, 665, 685
TatI	WGTACW	1 cut(s)	632
Tru1I	TTAA	2 cut(s)	264, 603
Tru9I	TTAA	2 cut(s)	264, 603
TscAI	CASTG	2 cut(s)	238, 623
TspDTI	ATGAA	2 cut(s)	140, 327
TspRI	CASTG	2 cut(s)	238, 623
VpaK11BI	GGWCC	2 cut(s)	32, 569
XapI	RAATTY	2 cut(s)	19, 386
XhoI	CTCGAG	2 cut(s)	197, 274
XspI	CTAG	2 cut(s)	584, 647
ZrmI	AGTACT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.