Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007671.1

Orthogroup ID

OG0000894

Physical Location & Seq

Genomic Coordinates Reverse (-)

27303 .. 28312

Gene Structure 1010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007671.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

atgtgtccatacttggagaatttcggttttggtccagaaataaacaactctgaaggggttttagccaacgaaagttggtactccacaaaccagttctcattagatgtcatattccacaacaagatgaagcagtataagtgcttgacaaacaactccactctggattcggccatttatataccgatttatgctggcctcgaggacagtctccatttgtgggatcccgacctcactgcaagagactctttcggtttagactttattaagtggatctcgagaagacccgaatggaagaaaatgtggggcagagaccatttgtttgttgttgggaggatttcatgggatttcagaaggaaaacagaccacaatactgattgggtagtaaattgcgcttcttgccagagctttcaccctgcaaaggatagtgaggtgttacaatggcagaagaaaatgagaaaacaagaaaggccttacttgtttgcttttgttgggggaccgaggcctgagctagaaacttcaattcgggttaaacttattgaacaggtgtttcaaagatcagtctattgcttgcagcctacaggggattcatacactaggagatccgcttttgactctttcctagctggttgtatccccgttttctttcatccaggtagcgcttatacccaatacttatggcatctaccaaagaatcacaccaagtattcggtgtttattccggttatggatgcaacagatttgaatgaagtcagcattgagaaaaccttgcttggaatctcaagggccaaggaactagcaatgagagaggaggttatacggcttataccaaacctggtgtattcagctcccatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

284

Amino Acids

33.1

Weight (kDa)

7.64

Isoelectric Point (pI)

49.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13990 AT4G13990
fragaria_vesca	FvH4_4g13210 FvH4_4g13212 FvH4_4g13213 FvH4_4g13214 FvH4_4g13214 FvH4_4g13214
malus_domestica	MD00G1064500.v1.1 MD00G1064600.v1.1 MD04G1017500.v1.1 MD04G1017600.v1.1 MD04G1017700.v1.1 MD04G1017900.v1.1
prunus_persica	Prupe.1G165700_v2.0.a1 Prupe.1G165800_v2.0.a1 Prupe.1G166100_v2.0.a1 Prupe.1G166200_v2.0.a1 Prupe.1G166300_v2.0.a1 Prupe.1G166600_v2.0.a1
pyrus_communis	pycom04g01400 pycom04g01410 pycom420g00900 pycom420g00910
rosa_chinensis	RchiOBHm_Chr1g0331261 RchiOBHm_Chr4g0413361 RchiOBHm_Chr4g0413371 RchiOBHm_Chr4g0413411
rosa_laevigata	RLG00000008220 RLG00000008221 RLG00000008222 RLG00000008223
rosa_multiflora	Rmu_sc0005828.1_g000002 Rmu_sc0007671.1_g000003 Rmu_sc0007671.1_g000004 Rmu_sc0007671.1_g000007 Rmu_sc0007671.1_g000010 Rmu_sc0009573.1_g000011 Rmu_sc0009573.1_g000012
rosa_roxburghii	Rroxscaffold_5G00357290 Rroxscaffold_5G00357300 Rroxscaffold_5G00357320
rosa_rugosa	Rorug04G0120200 Rorug04G0120300 Rorug04G0120400 Rorug04G0120500
rosa_samantha	Rh1AG117000 Rh4AG179600 Rh4AG179700 Rh4AG179800 Rh4BG178700 Rh4BG178800 Rh4BG178900 Rh4CG190200 Rh4CG190400 Rh4CG190500 Rh4CG190600 Rh4CG190700 Rh4DG174600 Rh4DG174700 Rh4DG174900
rosa_wichuraiana	Rw4G014930 Rw4G014940 Rw4G014960 Rw4G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	197
AciI	CCGC	1 cut(s)	603
AclWI	GGATC	4 cut(s)	215, 228, 278, 594
AcoI	YGGCCR	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	19
AcuI	CTGAAG	1 cut(s)	72
AfaI	GTAC	1 cut(s)	80
AfeI	AGCGCT	1 cut(s)	658
AfiI	CCNNNNNNNGG	2 cut(s)	217, 418
AgsI	TTSAA	4 cut(s)	519, 539, 551, 742
AjnI	CCWGG	2 cut(s)	649, 831
AluBI	AGCT	4 cut(s)	405, 508, 623, 845
AluI	AGCT	4 cut(s)	405, 508, 623, 845
Alw26I	GTCTC	3 cut(s)	212, 234, 303
AlwI	GGATC	4 cut(s)	215, 228, 278, 594
Ama87I	CYCGRG	2 cut(s)	197, 274
Aor51HI	AGCGCT	1 cut(s)	658
AoxI	GGCC	5 cut(s)	168, 193, 467, 500, 783
ApeKI	GCWGC	1 cut(s)	571
ApoI	RAATTY	1 cut(s)	19
ArsI	GACNNNNNNTTYG	2 cut(s)	302, 334
AspLEI	GCGC	2 cut(s)	392, 659
AspS9I	GGNCC	3 cut(s)	32, 494, 783
AsuHPI	GGTGA	1 cut(s)	401
AvaI	CYCGRG	2 cut(s)	197, 274
AvaII	GGWCC	2 cut(s)	32, 494
BamHI	GGATCC	1 cut(s)	220
BbsI	GAAGAC	1 cut(s)	286
BbvI	GCAGC	1 cut(s)	583
BceAI	ACGGC	1 cut(s)	833
BcgI	CGANNNNNNTGC	2 cut(s)	215, 249
BciT130I	CCWGG	2 cut(s)	651, 833
BciVI	GTATCC	1 cut(s)	641
BcoDI	GTCTC	3 cut(s)	212, 234, 303
BfaI	CTAG	4 cut(s)	509, 594, 620, 794
BfmI	CTRYAG	1 cut(s)	576
BfoI	RGCGCY	1 cut(s)	660
BfuI	GTATCC	1 cut(s)	641
BisI	GCNGC	1 cut(s)	572
BlsI	GCNGC	1 cut(s)	573
Bme1390I	CCNGG	2 cut(s)	651, 833
Bme18I	GGWCC	2 cut(s)	32, 494
BmeT110I	CYCGRG	2 cut(s)	197, 274
BmgT120I	GGNCC	3 cut(s)	32, 494, 783
BmiI	GGNNCC	2 cut(s)	222, 495
BmrFI	CCNGG	2 cut(s)	651, 833
BmsI	GCATC	2 cut(s)	688, 718
BpiI	GAAGAC	1 cut(s)	286
Bpu10I	CCTNAGC	1 cut(s)	504
BpuEI	CTTGAG	1 cut(s)	763
BsaI	GGTCTC	1 cut(s)	303
BsaJI	CCNNGG	2 cut(s)	497, 786
BsaWI	WCCGGW	1 cut(s)	718
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 418
Bse1I	ACTGG	1 cut(s)	91
Bse3DI	GCAATG	1 cut(s)	804
BseBI	CCWGG	2 cut(s)	651, 833
BseDI	CCNNGG	2 cut(s)	497, 786
BseGI	GGATG	2 cut(s)	646, 733
BseLI	CCNNNNNNNGG	2 cut(s)	217, 418
BseMI	GCAATG	1 cut(s)	804
BseMII	CTCAG	1 cut(s)	495
BseNI	ACTGG	1 cut(s)	91
BseRI	GAGGAG	1 cut(s)	821
BseXI	GCAGC	1 cut(s)	583
BshFI	GGCC	5 cut(s)	170, 195, 469, 502, 785
BsiHKCI	CYCGRG	2 cut(s)	197, 274
BsiSI	CCGG	1 cut(s)	719
BslFI	GGGAC	1 cut(s)	507
BslI	CCNNNNNNNGG	2 cut(s)	217, 418
BsmAI	GTCTC	3 cut(s)	212, 234, 303
BsmFI	GGGAC	1 cut(s)	507
BsnI	GGCC	5 cut(s)	170, 195, 469, 502, 785
Bso31I	GGTCTC	1 cut(s)	303
BsoBI	CYCGRG	2 cut(s)	197, 274
Bsp143I	GATC	4 cut(s)	220, 270, 554, 599
BspACI	CCGC	1 cut(s)	603
BspANI	GGCC	5 cut(s)	170, 195, 469, 502, 785
BspCNI	CTCAG	1 cut(s)	496
BspLI	GGNNCC	2 cut(s)	222, 495
BspPI	GGATC	4 cut(s)	215, 228, 278, 594
BspTNI	GGTCTC	1 cut(s)	303
BsrDI	GCAATG	1 cut(s)	804
BsrI	ACTGG	1 cut(s)	91
BssECI	CCNNGG	2 cut(s)	497, 786
BssMI	GATC	4 cut(s)	220, 270, 554, 599
BssT1I	CCWWGG	1 cut(s)	786
Bst2UI	CCWGG	2 cut(s)	651, 833
Bst4CI	ACNGT	1 cut(s)	206
BstC8I	GCNNGC	2 cut(s)	193, 569
BstDEI	CTNAG	1 cut(s)	504
BstF5I	GGATG	2 cut(s)	646, 733
BstH2I	RGCGCY	1 cut(s)	660
BstHHI	GCGC	2 cut(s)	392, 659
BstKTI	GATC	4 cut(s)	223, 273, 557, 602
BstMAI	GTCTC	3 cut(s)	212, 234, 303
BstMBI	GATC	4 cut(s)	220, 270, 554, 599
BstMWI	GCNNNNNNNGC	1 cut(s)	396
BstNI	CCWGG	2 cut(s)	651, 833
BstSCI	CCNGG	2 cut(s)	649, 831
BstSFI	CTRYAG	1 cut(s)	576
BstV1I	GCAGC	1 cut(s)	583
BstV2I	GAAGAC	1 cut(s)	286
BstX2I	RGATCY	3 cut(s)	220, 270, 599
BstYI	RGATCY	3 cut(s)	220, 270, 599
BsuI	GTATCC	1 cut(s)	641
BsuRI	GGCC	5 cut(s)	170, 195, 469, 502, 785
BtsCI	GGATG	2 cut(s)	646, 733
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	2 cut(s)	193, 569
CfoI	GCGC	2 cut(s)	392, 659
Cfr13I	GGNCC	3 cut(s)	32, 494, 783
CsiI	ACCWGGT	1 cut(s)	831
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	2 cut(s)	339, 850
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	1 cut(s)	504
DpnI	GATC	4 cut(s)	222, 272, 556, 601
DpnII	GATC	4 cut(s)	220, 270, 554, 599
EaeI	YGGCCR	1 cut(s)	168
Eco130I	CCWWGG	1 cut(s)	786
Eco147I	AGGCCT	2 cut(s)	469, 502
Eco31I	GGTCTC	1 cut(s)	303
Eco47I	GGWCC	2 cut(s)	32, 494
Eco47III	AGCGCT	1 cut(s)	658
Eco57I	CTGAAG	1 cut(s)	72
Eco88I	CYCGRG	2 cut(s)	197, 274
EcoRII	CCWGG	2 cut(s)	649, 831
EcoT14I	CCWWGG	1 cut(s)	786
ErhI	CCWWGG	1 cut(s)	786
FaeI	CATG	2 cut(s)	342, 853
FalI	AAGNNNNNCTT	2 cut(s)	229, 261
FaqI	GGGAC	1 cut(s)	507
FatI	CATG	2 cut(s)	338, 849
Fnu4HI	GCNGC	1 cut(s)	572
FokI	GGATG	2 cut(s)	633, 740
Fsp4HI	GCNGC	1 cut(s)	572
FspBI	CTAG	4 cut(s)	509, 594, 620, 794
GlaI	GCGC	2 cut(s)	391, 658
GluI	GCNGC	1 cut(s)	572
HaeII	RGCGCY	1 cut(s)	660
HaeIII	GGCC	5 cut(s)	170, 195, 469, 502, 785
HapII	CCGG	1 cut(s)	719
HhaI	GCGC	2 cut(s)	392, 659
Hin1II	CATG	2 cut(s)	342, 853
Hin6I	GCGC	2 cut(s)	390, 657
HinP1I	GCGC	2 cut(s)	390, 657
HinfI	GANTC	6 cut(s)	164, 242, 584, 611, 691, 774
HpaII	CCGG	1 cut(s)	719
HphI	GGTGA	1 cut(s)	401
Hpy188I	TCNGA	2 cut(s)	52, 350
Hpy188III	TCNNGA	5 cut(s)	35, 161, 224, 274, 276
HpyAV	CCTTC	2 cut(s)	47, 345
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4V	TGCA	4 cut(s)	236, 416, 571, 731
HpyF10VI	GCNNNNNNNGC	1 cut(s)	396
HpyF3I	CTNAG	1 cut(s)	504
Hsp92II	CATG	2 cut(s)	342, 853
HspAI	GCGC	2 cut(s)	390, 657
Kzo9I	GATC	4 cut(s)	220, 270, 554, 599
LmnI	GCTCC	1 cut(s)	850
Lsp1109I	GCAGC	1 cut(s)	583
LweI	GCATC	2 cut(s)	688, 718
MabI	ACCWGGT	1 cut(s)	831
MaeI	CTAG	4 cut(s)	509, 594, 620, 794
MaeIII	GTNAC	1 cut(s)	432
MalI	GATC	4 cut(s)	222, 272, 556, 601
MboI	GATC	4 cut(s)	220, 270, 554, 599
MboII	GAAGA	3 cut(s)	291, 304, 457
MflI	RGATCY	3 cut(s)	220, 270, 599
MluCI	AATT	3 cut(s)	19, 385, 519
MlyI	GAGTC	2 cut(s)	236, 605
MnlI	CCTC	8 cut(s)	193, 206, 239, 324, 421, 492, 799, 802
MseI	TTAA	2 cut(s)	264, 528
MspI	CCGG	1 cut(s)	719
MspR9I	CCNGG	2 cut(s)	651, 833
MvaI	CCWGG	2 cut(s)	651, 833
MwoI	GCNNNNNNNGC	1 cut(s)	396
NdeII	GATC	4 cut(s)	220, 270, 554, 599
NlaIII	CATG	2 cut(s)	342, 853
NlaIV	GGNNCC	2 cut(s)	222, 495
PaeR7I	CTCGAG	2 cut(s)	197, 274
PceI	AGGCCT	2 cut(s)	469, 502
PfeI	GAWTC	4 cut(s)	164, 584, 691, 774
PkrI	GCNGC	1 cut(s)	573
PleI	GAGTC	2 cut(s)	236, 605
PpsI	GAGTC	2 cut(s)	236, 605
Psp6I	CCWGG	2 cut(s)	649, 831
PspGI	CCWGG	2 cut(s)	649, 831
PspN4I	GGNNCC	2 cut(s)	222, 495
PspPI	GGNCC	3 cut(s)	32, 494, 783
PspXI	VCTCGAGB	1 cut(s)	197
PsuI	RGATCY	3 cut(s)	220, 270, 599
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
SaqAI	TTAA	2 cut(s)	264, 528
SatI	GCNGC	1 cut(s)	572
Sau3AI	GATC	4 cut(s)	220, 270, 554, 599
Sau96I	GGNCC	3 cut(s)	32, 494, 783
SchI	GAGTC	2 cut(s)	236, 605
ScrFI	CCNGG	2 cut(s)	651, 833
SexAI	ACCWGGT	1 cut(s)	831
SfaNI	GCATC	2 cut(s)	688, 718
SfcI	CTRYAG	1 cut(s)	576
Sfr274I	CTCGAG	2 cut(s)	197, 274
SinI	GGWCC	2 cut(s)	32, 494
SlaI	CTCGAG	2 cut(s)	197, 274
SmlI	CTYRAG	3 cut(s)	197, 274, 778
SmoI	CTYRAG	3 cut(s)	197, 274, 778
Sse9I	AATT	3 cut(s)	19, 385, 519
SseBI	AGGCCT	2 cut(s)	469, 502
SsiI	CCGC	1 cut(s)	603
SspMI	CTAG	4 cut(s)	509, 594, 620, 794
StuI	AGGCCT	2 cut(s)	469, 502
StyD4I	CCNGG	2 cut(s)	649, 831
StyI	CCWWGG	1 cut(s)	786
TaaI	ACNGT	1 cut(s)	206
TaqI	TCGA	2 cut(s)	198, 275
TaqII	GACCGA	1 cut(s)	511
TasI	AATT	3 cut(s)	19, 385, 519
TfiI	GAWTC	4 cut(s)	164, 584, 691, 774
Tru1I	TTAA	2 cut(s)	264, 528
Tru9I	TTAA	2 cut(s)	264, 528
TscAI	CASTG	1 cut(s)	238
TseI	GCWGC	1 cut(s)	571
TspDTI	ATGAA	5 cut(s)	140, 327, 576, 635, 759
TspRI	CASTG	1 cut(s)	238
VpaK11BI	GGWCC	2 cut(s)	32, 494
XapI	RAATTY	1 cut(s)	19
XhoI	CTCGAG	2 cut(s)	197, 274
XspI	CTAG	4 cut(s)	509, 594, 620, 794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.