Rmu_sc0005828.1_g000002

Xyloglucan galactosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005828.1
OG0000894
Physical Location & Seq
Reverse (-)
7331 .. 8497
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005828.1_g000002.1.cds

Sequence Viewer

Length: 1167 bp
atgtgtccacacataaagaatttcggttttggtctggaaattaacaactctgaaggggttttaaccaacaagagatggttctccactaaccagttctcattagaactcatatttcacagcaagatgaagcactatgagtgcttgacaaacaactccactcaggcttcagctatttatataccaatctatcctggccttgaggagagtcaacatctgtgggatcctaacctcacagccagagactctttcggtgaagagttttccaagtgggtttcgagtagattcgaatggaagaaaatgtgggggagagaccatttctttgtttcagggagggttgctttcgactataggaggaaaacagacaacatttctgactggggtagcacactcagggtctcgccagagtctaacaacatgactatgttaacaattgaaggaagctcacggacaaatgatattgctataccatacgccactggctttcatcctgcaaaggacagtgaagtgtttcagtggcagaacagagtgagggggcaagaaaggccttacttgttcacttttgttggtggaccaaggcctgaccagccaaactctatccggggcaaactttttgatcagtgtcaagcctcaagtacttgcaaggtactaaattgccattcaagtgggatcaattgtgaagaaacggttactgttatgagcgtgtttcagaaatcagtttattgcttgcaccctacaggggatacattcaccagaaaatcagctttcgactctattctagctggttgcattcctgttttctttcatccggctagcgcttataaccagtatttatggtacttgcctaagaattacaccaagtattctgtatttattccagtgaggaaagcacaaaatttgaaagacggtagcattgagaaaatcttacttgaaatttcaaaggacatggaattcgccatgagagagcaagtgataagcttaattccaaagttggtgtacggagatcccaggtcaaggttagagaccaaagatgcatttgatattgctgtcaacaaaatacttgagaggatagaaaatgtaaggaaggtgatcaaagaggggagggatcctagtatcggatttgcagagccggatggtaataagttcctatttcctgaggagctagaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

388

Amino Acids

44.63

Weight (kDa)

7.59

Isoelectric Point (pI)

43.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 819
AclWI GGATC 6 cut(s) 215, 228, 674, 995, 1097, 1110
AcsI RAATTY 4 cut(s) 19, 892, 930, 947
AcuI CTGAAG 2 cut(s) 72, 150
AfaI GTAC 4 cut(s) 634, 645, 836, 995
AfeI AGCGCT 1 cut(s) 814
AfiI CCNNNNNNNGG 3 cut(s) 736, 1011, 1112
AgsI TTSAA 5 cut(s) 434, 660, 898, 929, 936
AjnI CCWGG 2 cut(s) 190, 1004
AluBI AGCT 6 cut(s) 170, 441, 761, 779, 975, 1159
AluI AGCT 6 cut(s) 170, 441, 761, 779, 975, 1159
Alw26I GTCTC 4 cut(s) 234, 303, 400, 1013
AlwI GGATC 6 cut(s) 215, 228, 674, 995, 1097, 1110
Aor51HI AGCGCT 1 cut(s) 814
AoxI GGCC 3 cut(s) 193, 542, 575
ApoI RAATTY 4 cut(s) 19, 892, 930, 947
ArsI GACNNNNNNTTYG 4 cut(s) 302, 334, 932, 964
Asp700I GAANNNNTTC 1 cut(s) 507
AspLEI GCGC 1 cut(s) 815
AspS9I GGNCC 1 cut(s) 569
AsuC2I CCSGG 1 cut(s) 599
AsuHPI GGTGA 3 cut(s) 263, 739, 1096
AsuII TTCGAA 1 cut(s) 285
AsuNHI GCTAGC 1 cut(s) 809
AvaII GGWCC 1 cut(s) 569
AxyI CCTNAGG 1 cut(s) 1152
BamHI GGATCC 2 cut(s) 220, 1102
BccI CCATC 2 cut(s) 69, 1124
BciT130I CCWGG 2 cut(s) 192, 1006
BciVI GTATCC 1 cut(s) 733
BclI TGATCA 2 cut(s) 613, 1086
BcnI CCSGG 1 cut(s) 599
BcoDI GTCTC 4 cut(s) 234, 303, 400, 1013
BfaI CTAG 4 cut(s) 776, 810, 1107, 1160
BfmI CTRYAG 2 cut(s) 346, 732
BfoI RGCGCY 1 cut(s) 816
BfuI GTATCC 1 cut(s) 733
BmcAI AGTACT 1 cut(s) 634
Bme1390I CCNGG 3 cut(s) 192, 599, 1006
Bme18I GGWCC 1 cut(s) 569
BmgT120I GGNCC 1 cut(s) 569
BmiI GGNNCC 2 cut(s) 222, 1104
BmrFI CCNGG 3 cut(s) 192, 599, 1006
BmrI ACTGGG 1 cut(s) 385
BmsI GCATC 1 cut(s) 1018
BmtI GCTAGC 1 cut(s) 813
BmuI ACTGGG 1 cut(s) 385
Bpu14I TTCGAA 1 cut(s) 285
BpuEI CTTGAG 3 cut(s) 218, 613, 1079
BpuMI CCSGG 1 cut(s) 599
BsaI GGTCTC 3 cut(s) 303, 400, 1013
BsaJI CCNNGG 3 cut(s) 572, 598, 1004
Bsc4I CCNNNNNNNGG 3 cut(s) 736, 1011, 1112
Bse1I ACTGG 5 cut(s) 91, 380, 481, 823, 875
Bse21I CCTNAGG 1 cut(s) 1152
BseBI CCWGG 2 cut(s) 192, 1006
BseDI CCNNGG 3 cut(s) 572, 598, 1004
BseGI GGATG 3 cut(s) 484, 802, 1135
BseLI CCNNNNNNNGG 3 cut(s) 736, 1011, 1112
BseMII CTCAG 3 cut(s) 173, 403, 1143
BseNI ACTGG 5 cut(s) 91, 380, 481, 823, 875
BseRI GAGGAG 1 cut(s) 215
BshFI GGCC 3 cut(s) 195, 544, 577
BsiSI CCGG 3 cut(s) 598, 806, 1127
BslI CCNNNNNNNGG 3 cut(s) 736, 1011, 1112
BsmAI GTCTC 4 cut(s) 234, 303, 400, 1013
BsmI GAATGC 1 cut(s) 786
BsnI GGCC 3 cut(s) 195, 544, 577
Bso31I GGTCTC 3 cut(s) 303, 400, 1013
Bsp119I TTCGAA 1 cut(s) 285
Bsp143I GATC 6 cut(s) 220, 613, 666, 1000, 1086, 1102
BspANI GGCC 3 cut(s) 195, 544, 577
BspCNI CTCAG 3 cut(s) 172, 402, 1144
BspLI GGNNCC 2 cut(s) 222, 1104
BspOI GCTAGC 1 cut(s) 813
BspPI GGATC 6 cut(s) 215, 228, 674, 995, 1097, 1110
BspT104I TTCGAA 1 cut(s) 285
BspTNI GGTCTC 3 cut(s) 303, 400, 1013
BsrI ACTGG 5 cut(s) 91, 380, 481, 823, 875
BssECI CCNNGG 3 cut(s) 572, 598, 1004
BssMI GATC 6 cut(s) 220, 613, 666, 1000, 1086, 1102
BssT1I CCWWGG 1 cut(s) 572
Bst2UI CCWGG 2 cut(s) 192, 1006
Bst4CI ACNGT 4 cut(s) 500, 685, 691, 905
Bst6I CTCTTC 1 cut(s) 249
BstBI TTCGAA 1 cut(s) 285
BstC8I GCNNGC 2 cut(s) 725, 811
BstDEI CTNAG 4 cut(s) 159, 389, 843, 1152
BstF5I GGATG 3 cut(s) 484, 802, 1135
BstH2I RGCGCY 1 cut(s) 816
BstHHI GCGC 1 cut(s) 815
BstKTI GATC 6 cut(s) 223, 616, 669, 1003, 1089, 1105
BstMAI GTCTC 4 cut(s) 234, 303, 400, 1013
BstMBI GATC 6 cut(s) 220, 613, 666, 1000, 1086, 1102
BstMWI GCNNNNNNNGC 2 cut(s) 541, 583
BstNI CCWGG 2 cut(s) 192, 1006
BstSCI CCNGG 3 cut(s) 190, 597, 1004
BstSFI CTRYAG 2 cut(s) 346, 732
BstX2I RGATCY 3 cut(s) 220, 1000, 1102
BstXI CCANNNNNNTGG 1 cut(s) 662
BstYI RGATCY 3 cut(s) 220, 1000, 1102
Bsu36I CCTNAGG 1 cut(s) 1152
BsuI GTATCC 1 cut(s) 733
BsuRI GGCC 3 cut(s) 195, 544, 577
BtsCI GGATG 3 cut(s) 484, 802, 1135
BtsIMutI CAGTG 5 cut(s) 474, 505, 518, 623, 882
Cac8I GCNNGC 2 cut(s) 725, 811
CfoI GCGC 1 cut(s) 815
Cfr13I GGNCC 1 cut(s) 569
Csp6I GTAC 4 cut(s) 633, 644, 835, 994
CspCI CAANNNNNGTGG 2 cut(s) 197, 232
CviAII CATG 3 cut(s) 415, 943, 955
CviQI GTAC 4 cut(s) 633, 644, 835, 994
DdeI CTNAG 4 cut(s) 159, 389, 843, 1152
DpnI GATC 6 cut(s) 222, 615, 668, 1002, 1088, 1104
DpnII GATC 6 cut(s) 220, 613, 666, 1000, 1086, 1102
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 572
Eco147I AGGCCT 2 cut(s) 544, 577
Eco31I GGTCTC 3 cut(s) 303, 400, 1013
Eco47I GGWCC 1 cut(s) 569
Eco47III AGCGCT 1 cut(s) 814
Eco57I CTGAAG 2 cut(s) 72, 150
Eco81I CCTNAGG 1 cut(s) 1152
EcoRI GAATTC 1 cut(s) 947
EcoRII CCWGG 2 cut(s) 190, 1004
EcoT14I CCWWGG 1 cut(s) 572
EcoT22I ATGCAT 1 cut(s) 1033
ErhI CCWWGG 1 cut(s) 572
FaeI CATG 3 cut(s) 418, 946, 958
FatI CATG 3 cut(s) 414, 942, 954
FbaI TGATCA 2 cut(s) 613, 1086
FokI GGATG 3 cut(s) 471, 789, 1142
FspBI CTAG 4 cut(s) 776, 810, 1107, 1160
GlaI GCGC 1 cut(s) 814
HaeII RGCGCY 1 cut(s) 816
HaeIII GGCC 3 cut(s) 195, 544, 577
HapII CCGG 3 cut(s) 598, 806, 1127
HhaI GCGC 1 cut(s) 815
Hin1II CATG 3 cut(s) 418, 946, 958
Hin6I GCGC 1 cut(s) 813
HinP1I GCGC 1 cut(s) 813
HincII GTYRAC 3 cut(s) 209, 426, 1048
HindII GTYRAC 3 cut(s) 209, 426, 1048
HindIII AAGCTT 1 cut(s) 973
HinfI GANTC 5 cut(s) 205, 242, 282, 404, 767
HpaI GTTAAC 1 cut(s) 426
HpaII CCGG 3 cut(s) 598, 806, 1127
HphI GGTGA 3 cut(s) 263, 739, 1096
Hpy166II GTNNAC 7 cut(s) 8, 209, 426, 555, 569, 994, 1048
Hpy188I TCNGA 4 cut(s) 52, 373, 708, 1115
Hpy188III TCNNGA 2 cut(s) 35, 1151
Hpy8I GTNNAC 7 cut(s) 8, 209, 426, 555, 569, 994, 1048
HpyAV CCTTC 3 cut(s) 47, 428, 1075
HpyCH4III ACNGT 4 cut(s) 500, 685, 691, 905
HpyCH4V TGCA 6 cut(s) 491, 639, 727, 786, 1031, 1121
HpyF10VI GCNNNNNNNGC 2 cut(s) 541, 583
HpyF3I CTNAG 4 cut(s) 159, 389, 843, 1152
Hsp92II CATG 3 cut(s) 418, 946, 958
HspAI GCGC 1 cut(s) 813
Ksp22I TGATCA 2 cut(s) 613, 1086
KspAI GTTAAC 1 cut(s) 426
Kzo9I GATC 6 cut(s) 220, 613, 666, 1000, 1086, 1102
LmnI GCTCC 1 cut(s) 1156
LweI GCATC 1 cut(s) 1018
MaeI CTAG 4 cut(s) 776, 810, 1107, 1160
MaeIII GTNAC 1 cut(s) 685
MalI GATC 6 cut(s) 222, 615, 668, 1002, 1088, 1104
MboI GATC 6 cut(s) 220, 613, 666, 1000, 1086, 1102
MboII GAAGA 3 cut(s) 266, 304, 689
MfeI CAATTG 2 cut(s) 429, 670
MflI RGATCY 3 cut(s) 220, 1000, 1102
MlyI GAGTC 4 cut(s) 214, 236, 413, 761
Mph1103I ATGCAT 1 cut(s) 1033
MroXI GAANNNNTTC 1 cut(s) 507
MseI TTAA 4 cut(s) 42, 62, 425, 977
MslI CAYNNNNRTG 2 cut(s) 419, 660
MspI CCGG 3 cut(s) 598, 806, 1127
MspR9I CCNGG 3 cut(s) 192, 599, 1006
MunI CAATTG 2 cut(s) 429, 670
Mva1269I GAATGC 1 cut(s) 786
MvaI CCWGG 2 cut(s) 192, 1006
MwoI GCNNNNNNNGC 2 cut(s) 541, 583
NciI CCSGG 1 cut(s) 599
NdeII GATC 6 cut(s) 220, 613, 666, 1000, 1086, 1102
NheI GCTAGC 1 cut(s) 809
NlaIII CATG 3 cut(s) 418, 946, 958
NlaIV GGNNCC 2 cut(s) 222, 1104
NsiI ATGCAT 1 cut(s) 1033
NspV TTCGAA 1 cut(s) 285
PceI AGGCCT 2 cut(s) 544, 577
PctI GAATGC 1 cut(s) 786
PdmI GAANNNNTTC 1 cut(s) 507
PfeI GAWTC 1 cut(s) 282
PleI GAGTC 4 cut(s) 213, 236, 412, 761
PpsI GAGTC 4 cut(s) 213, 236, 412, 761
PsiI TTATAA 1 cut(s) 819
Psp6I CCWGG 2 cut(s) 190, 1004
PspGI CCWGG 2 cut(s) 190, 1004
PspN4I GGNNCC 2 cut(s) 222, 1104
PspPI GGNCC 1 cut(s) 569
PsuI RGATCY 3 cut(s) 220, 1000, 1102
RsaI GTAC 4 cut(s) 634, 645, 836, 995
RsaNI GTAC 4 cut(s) 633, 644, 835, 994
RseI CAYNNNNRTG 2 cut(s) 419, 660
SaqAI TTAA 4 cut(s) 42, 62, 425, 977
Sau3AI GATC 6 cut(s) 220, 613, 666, 1000, 1086, 1102
Sau96I GGNCC 1 cut(s) 569
ScaI AGTACT 1 cut(s) 634
SchI GAGTC 4 cut(s) 214, 236, 413, 761
ScrFI CCNGG 3 cut(s) 192, 599, 1006
SfaNI GCATC 1 cut(s) 1018
SfcI CTRYAG 2 cut(s) 346, 732
SfuI TTCGAA 1 cut(s) 285
SinI GGWCC 1 cut(s) 569
SmiMI CAYNNNNRTG 2 cut(s) 419, 660
SmlI CTYRAG 3 cut(s) 197, 628, 1058
SmoI CTYRAG 3 cut(s) 197, 628, 1058
SseBI AGGCCT 2 cut(s) 544, 577
SspMI CTAG 4 cut(s) 776, 810, 1107, 1160
StuI AGGCCT 2 cut(s) 544, 577
StyD4I CCNGG 3 cut(s) 190, 597, 1004
StyI CCWWGG 1 cut(s) 572
TaaI ACNGT 4 cut(s) 500, 685, 691, 905
TaqI TCGA 4 cut(s) 275, 285, 342, 765
TatI WGTACW 1 cut(s) 632
TfiI GAWTC 1 cut(s) 282
Tru1I TTAA 4 cut(s) 42, 62, 425, 977
Tru9I TTAA 4 cut(s) 42, 62, 425, 977
TscAI CASTG 5 cut(s) 481, 505, 518, 623, 882
TspDTI ATGAA 3 cut(s) 140, 473, 791
TspGWI ACGGA 2 cut(s) 460, 1011
TspRI CASTG 5 cut(s) 481, 505, 518, 623, 882
VpaK11BI GGWCC 1 cut(s) 569
XapI RAATTY 4 cut(s) 19, 892, 930, 947
XmnI GAANNNNTTC 1 cut(s) 507
XspI CTAG 4 cut(s) 776, 810, 1107, 1160
ZrmI AGTACT 1 cut(s) 634
Zsp2I ATGCAT 1 cut(s) 1033
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.