Prupe.1G166100_v2.0.a1

Xyloglucan galactosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000894
Physical Location & Seq
Forward (+)
13488480 .. 13490065
1586 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G166100.1

Sequence Viewer

Length: 1305 bp
TATTCAAGTTTACTGGGTGTTAACAATGGGGTCAATCTTCTGGTAAACAAACAAGTTCACCCGATTCGTATTGTGAAGATTAACCGCACGGAACATCCATGCTCTGATCGTTACATTTACATCCATGAAGGTCTTCCTAGCAGATTCAACTATGACTTCCTCAACAACTGTGAGTCTCTTACTGCAGGGGCTATGACTGTTAGCAACATTTCAAATATGTGTCCTTACTTTGTTAATTTGGGTCTTGGTCCAGTAATTGAAAGCTCCGAAGGGGTTTTAGCCAATGAGAGTTGGTTTTCCACAAACCAGTTCTTGTTAGAAGTCATATTCCACAACAGGATGAGGCAGTATGAGTGTTTGACAGAAAACTCCACTCTGGCTTCAGCCATTTATGTCCCATTCTATGCTGGCATAGATGCCAGTGTCCATCTGCGGGATCCTAACCTCACAGCCAGAGACTCTTCGGCGAAAGATCTTGTTCGATGGCTTTCGAGCAAACCCGAATGGAAGAAAATGTGGGGAAGTGACCATTTCTTTGTTGCTGGGAGGGTTTCCTGGGACTTCAGGAGGCGAAGAGACAATAGTTCTAATTGGGGTAGTAAACTCAGGTTCTTGCCTGAGTCTATGAACATGAGCATGTTATCAATTGAAGGAAGCGCATGGAAAAATGACCTTGCTATACCATACCCTACAAGCTTTCATCCTAAAGAGGACAGTGAGGTGGTTCAGTGGCAGAACAGAGTTAGAAAACAAGAAAGGCCTCACTTGTTTGCTTTTGTTGGTGCACCGAGGGCTCGCCAGAAAAATTCTATCCGGGGCAAACTTATTGATCAGTGCCAAGCTTCAACTAATTGCAAGTTTCTACATTGCCGTAAAAACAATTGTGACAACCCGGTTACTATTATGAAGGTGTTTCAGAGCTCAGTTTATTGCTTGCAGCCTCCCGGCGATACGAGCACCAGGAGATCCACTTTTGACTCTTTTGTAGCTGGTTGCATTCCAGTATTCTTTCAACCGGCATCGGCTTACACTCAATACTTATGGCATTTACCAAAAAATCATACCAAGTATTCAGTGTTTATTCCGGTGAGGAGTGCTGAAGATTTGAAAGAAGGCGACATTGAGAAAGTCTTGCTTGGAATTTCAAAGGACAGGGAATTGGCCATGAGAGAGGAGGTTATAAGGCTAATACCAAAGCTGGTGTATGCAGATCCCAGGTCAAGATTGAAGACTCAAGATGCATTTGATTTAGCTGTGCAGGGAATTCTTGAGAGAATAGGAAATGTTAGGAAGGAAGGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

435

Amino Acids

49.69

Weight (kDa)

9.05

Isoelectric Point (pI)

46.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1181
AciI CCGC 2 cut(s) 85, 433
AclWI GGATC 4 cut(s) 431, 444, 960, 1205
AcoI YGGCCR 1 cut(s) 1161
AcsI RAATTY 3 cut(s) 805, 1140, 1263
AcuI CTGAAG 3 cut(s) 366, 547, 1119
AfiI CCNNNNNNNGG 1 cut(s) 433
AjnI CCWGG 3 cut(s) 554, 959, 1214
AluBI AGCT 7 cut(s) 264, 696, 842, 921, 989, 1198, 1253
AluI AGCT 7 cut(s) 264, 696, 842, 921, 989, 1198, 1253
Alw21I GWGCWC 3 cut(s) 787, 923, 959
Alw26I GTCTC 3 cut(s) 180, 450, 570
Alw44I GTGCAC 1 cut(s) 783
AlwI GGATC 4 cut(s) 431, 444, 960, 1205
AoxI GGCC 2 cut(s) 758, 1161
ApaLI GTGCAC 1 cut(s) 783
ApeKI GCWGC 1 cut(s) 937
ApoI RAATTY 3 cut(s) 805, 1140, 1263
ArsI GACNNNNNNTTYG 2 cut(s) 518, 550
Asp700I GAANNNNTTC 1 cut(s) 132
AspLEI GCGC 1 cut(s) 659
AspS9I GGNCC 1 cut(s) 248
AsuC2I CCSGG 3 cut(s) 815, 893, 945
AsuHPI GGTGA 2 cut(s) 50, 1099
AvaII GGWCC 1 cut(s) 248
BaeGI GKGCMC 1 cut(s) 787
BalI TGGCCA 1 cut(s) 1163
BamHI GGATCC 1 cut(s) 436
BanII GRGCYC 2 cut(s) 796, 923
BbsI GAAGAC 2 cut(s) 125, 1235
Bbv12I GWGCWC 3 cut(s) 787, 923, 959
BbvI GCAGC 1 cut(s) 949
BccI CCATC 2 cut(s) 435, 477
BceAI ACGGC 1 cut(s) 855
BciT130I CCWGG 3 cut(s) 556, 961, 1216
BclI TGATCA 1 cut(s) 829
BcnI CCSGG 3 cut(s) 815, 893, 945
BcoDI GTCTC 3 cut(s) 180, 450, 570
BfaI CTAG 1 cut(s) 138
BfmI CTRYAG 1 cut(s) 183
BglII AGATCT 1 cut(s) 472
BisI GCNGC 1 cut(s) 938
BlsI GCNGC 1 cut(s) 939
Bme1390I CCNGG 6 cut(s) 556, 815, 893, 945, 961, 1216
Bme18I GGWCC 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 248
BmiI GGNNCC 1 cut(s) 438
BmrFI CCNGG 6 cut(s) 556, 815, 893, 945, 961, 1216
BmrI ACTGGG 1 cut(s) 23
BmsI GCATC 3 cut(s) 406, 1028, 1228
BmuI ACTGGG 1 cut(s) 23
BpiI GAAGAC 2 cut(s) 125, 1235
BpuEI CTTGAG 2 cut(s) 1218, 1289
BpuMI CCSGG 3 cut(s) 815, 893, 945
BsaJI CCNNGG 4 cut(s) 555, 788, 814, 1214
BsaWI WCCGGW 1 cut(s) 1084
Bsc4I CCNNNNNNNGG 1 cut(s) 433
Bse118I RCCGGY 1 cut(s) 1015
Bse1I ACTGG 5 cut(s) 18, 251, 307, 420, 1001
Bse3DI GCAATG 1 cut(s) 865
BseBI CCWGG 3 cut(s) 556, 961, 1216
BseDI CCNNGG 4 cut(s) 555, 788, 814, 1214
BseGI GGATG 4 cut(s) 94, 120, 345, 700
BseLI CCNNNNNNNGG 1 cut(s) 433
BseMI GCAATG 1 cut(s) 865
BseMII CTCAG 3 cut(s) 609, 619, 936
BseNI ACTGG 5 cut(s) 18, 251, 307, 420, 1001
BseRI GAGGAG 2 cut(s) 1105, 1187
BseSI GKGCMC 1 cut(s) 787
BseXI GCAGC 1 cut(s) 949
BseYI CCCAGC 1 cut(s) 542
BsgI GTGCAG 1 cut(s) 1277
BshFI GGCC 2 cut(s) 760, 1163
BsiHKAI GWGCWC 3 cut(s) 787, 923, 959
BsiSI CCGG 5 cut(s) 814, 893, 945, 1016, 1085
BslFI GGGAC 2 cut(s) 380, 572
BslI CCNNNNNNNGG 1 cut(s) 433
BsmAI GTCTC 3 cut(s) 180, 450, 570
BsmFI GGGAC 2 cut(s) 380, 572
BsmI GAATGC 1 cut(s) 996
BsnI GGCC 2 cut(s) 760, 1163
Bsp1286I GDGCHC 4 cut(s) 787, 796, 923, 959
Bsp143I GATC 6 cut(s) 106, 436, 472, 829, 965, 1210
BspACI CCGC 2 cut(s) 85, 433
BspANI GGCC 2 cut(s) 760, 1163
BspCNI CTCAG 3 cut(s) 610, 618, 935
BspLI GGNNCC 1 cut(s) 438
BspMAI CTGCAG 1 cut(s) 187
BspPI GGATC 4 cut(s) 431, 444, 960, 1205
BsrDI GCAATG 1 cut(s) 865
BsrFI RCCGGY 1 cut(s) 1015
BsrI ACTGG 5 cut(s) 18, 251, 307, 420, 1001
BssAI RCCGGY 1 cut(s) 1015
BssECI CCNNGG 4 cut(s) 555, 788, 814, 1214
BssMI GATC 6 cut(s) 106, 436, 472, 829, 965, 1210
Bst2UI CCWGG 3 cut(s) 556, 961, 1216
Bst4CI ACNGT 3 cut(s) 170, 199, 716
Bst6I CTCTTC 2 cut(s) 466, 568
BstC8I GCNNGC 3 cut(s) 409, 796, 935
BstDEI CTNAG 3 cut(s) 605, 618, 922
BstF5I GGATG 4 cut(s) 94, 120, 345, 700
BstHHI GCGC 1 cut(s) 659
BstKTI GATC 6 cut(s) 109, 439, 475, 832, 968, 1213
BstMAI GTCTC 3 cut(s) 180, 450, 570
BstMBI GATC 6 cut(s) 106, 436, 472, 829, 965, 1210
BstMWI GCNNNNNNNGC 2 cut(s) 791, 954
BstNI CCWGG 3 cut(s) 556, 961, 1216
BstNSI RCATGY 1 cut(s) 640
BstSCI CCNGG 6 cut(s) 554, 813, 891, 943, 959, 1214
BstSFI CTRYAG 1 cut(s) 183
BstSLI GKGCMC 1 cut(s) 787
BstV1I GCAGC 1 cut(s) 949
BstV2I GAAGAC 2 cut(s) 125, 1235
BstX2I RGATCY 4 cut(s) 436, 472, 965, 1210
BstYI RGATCY 4 cut(s) 436, 472, 965, 1210
BsuRI GGCC 2 cut(s) 760, 1163
BtsCI GGATG 4 cut(s) 94, 120, 345, 700
BtsIMutI CAGTG 5 cut(s) 427, 721, 734, 839, 1080
Cac8I GCNNGC 3 cut(s) 409, 796, 935
CfoI GCGC 1 cut(s) 659
Cfr10I RCCGGY 1 cut(s) 1015
Cfr13I GGNCC 1 cut(s) 248
CviAII CATG 6 cut(s) 99, 125, 631, 637, 660, 1165
DdeI CTNAG 3 cut(s) 605, 618, 922
DpnI GATC 6 cut(s) 108, 438, 474, 831, 967, 1212
DpnII GATC 6 cut(s) 106, 436, 472, 829, 965, 1210
EaeI YGGCCR 1 cut(s) 1161
Eam1104I CTCTTC 2 cut(s) 466, 568
EarI CTCTTC 2 cut(s) 466, 568
Ecl136II GAGCTC 1 cut(s) 921
Eco147I AGGCCT 1 cut(s) 760
Eco24I GRGCYC 2 cut(s) 796, 923
Eco47I GGWCC 1 cut(s) 248
Eco53kI GAGCTC 1 cut(s) 921
Eco57I CTGAAG 3 cut(s) 366, 547, 1119
EcoICRI GAGCTC 1 cut(s) 921
EcoRI GAATTC 1 cut(s) 1263
EcoRII CCWGG 3 cut(s) 554, 959, 1214
EcoT22I ATGCAT 1 cut(s) 1243
EcoT38I GRGCYC 2 cut(s) 796, 923
FaeI CATG 6 cut(s) 102, 128, 634, 640, 663, 1168
FalI AAGNNNNNCTT 2 cut(s) 1119, 1151
FaqI GGGAC 2 cut(s) 380, 572
FatI CATG 6 cut(s) 98, 124, 630, 636, 659, 1164
FauI CCCGC 1 cut(s) 426
FbaI TGATCA 1 cut(s) 829
Fnu4HI GCNGC 1 cut(s) 938
FokI GGATG 4 cut(s) 81, 107, 352, 687
FriOI GRGCYC 2 cut(s) 796, 923
Fsp4HI GCNGC 1 cut(s) 938
FspBI CTAG 1 cut(s) 138
GlaI GCGC 1 cut(s) 658
GluI GCNGC 1 cut(s) 938
GsaI CCCAGC 1 cut(s) 546
HaeIII GGCC 2 cut(s) 760, 1163
HapII CCGG 5 cut(s) 814, 893, 945, 1016, 1085
HhaI GCGC 1 cut(s) 659
Hin1II CATG 6 cut(s) 102, 128, 634, 640, 663, 1168
Hin6I GCGC 1 cut(s) 657
HinP1I GCGC 1 cut(s) 657
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HindIII AAGCTT 2 cut(s) 694, 840
HinfI GANTC 7 cut(s) 64, 144, 173, 458, 620, 977, 1231
HpaI GTTAAC 1 cut(s) 22
HpaII CCGG 5 cut(s) 814, 893, 945, 1016, 1085
HphI GGTGA 2 cut(s) 50, 1099
Hpy166II GTNNAC 6 cut(s) 11, 22, 46, 58, 602, 785
Hpy188I TCNGA 3 cut(s) 106, 268, 918
Hpy188III TCNNGA 4 cut(s) 565, 1221, 1235, 1268
Hpy8I GTNNAC 6 cut(s) 11, 22, 46, 58, 602, 785
HpyAV CCTTC 7 cut(s) 122, 263, 644, 901, 1106, 1285, 1289
HpyCH4III ACNGT 3 cut(s) 170, 199, 716
HpyCH4V TGCA 8 cut(s) 185, 785, 855, 937, 996, 1208, 1241, 1258
HpyF10VI GCNNNNNNNGC 2 cut(s) 791, 954
HpyF3I CTNAG 3 cut(s) 605, 618, 922
Hsp92II CATG 6 cut(s) 102, 128, 634, 640, 663, 1168
HspAI GCGC 1 cut(s) 657
Ksp22I TGATCA 1 cut(s) 829
KspAI GTTAAC 1 cut(s) 22
Kzo9I GATC 6 cut(s) 106, 436, 472, 829, 965, 1210
LmnI GCTCC 1 cut(s) 269
Lsp1109I GCAGC 1 cut(s) 949
LweI GCATC 3 cut(s) 406, 1028, 1228
MaeI CTAG 1 cut(s) 138
MaeIII GTNAC 4 cut(s) 110, 524, 884, 895
MalI GATC 6 cut(s) 108, 438, 474, 831, 967, 1212
MboI GATC 6 cut(s) 106, 436, 472, 829, 965, 1210
MboII GAAGA 8 cut(s) 29, 88, 125, 453, 520, 585, 1112, 1240
MfeI CAATTG 2 cut(s) 645, 880
MflI RGATCY 4 cut(s) 436, 472, 965, 1210
MhlI GDGCHC 4 cut(s) 787, 796, 923, 959
MlsI TGGCCA 1 cut(s) 1163
MluNI TGGCCA 1 cut(s) 1163
MlyI GAGTC 5 cut(s) 182, 452, 629, 971, 1225
Mox20I TGGCCA 1 cut(s) 1163
Mph1103I ATGCAT 1 cut(s) 1243
MroXI GAANNNNTTC 1 cut(s) 132
MscI TGGCCA 1 cut(s) 1163
MseI TTAA 3 cut(s) 21, 81, 234
MslI CAYNNNNRTG 1 cut(s) 635
Msp20I TGGCCA 1 cut(s) 1163
MspI CCGG 5 cut(s) 814, 893, 945, 1016, 1085
MspR9I CCNGG 6 cut(s) 556, 815, 893, 945, 961, 1216
MunI CAATTG 2 cut(s) 645, 880
Mva1269I GAATGC 1 cut(s) 996
MvaI CCWGG 3 cut(s) 556, 961, 1216
MwoI GCNNNNNNNGC 2 cut(s) 791, 954
NciI CCSGG 3 cut(s) 815, 893, 945
NdeII GATC 6 cut(s) 106, 436, 472, 829, 965, 1210
NlaIII CATG 6 cut(s) 102, 128, 634, 640, 663, 1168
NlaIV GGNNCC 1 cut(s) 438
NmuCI GTSAC 2 cut(s) 524, 884
NsiI ATGCAT 1 cut(s) 1243
NspI RCATGY 1 cut(s) 640
PceI AGGCCT 1 cut(s) 760
PctI GAATGC 1 cut(s) 996
PdmI GAANNNNTTC 1 cut(s) 132
PfeI GAWTC 2 cut(s) 64, 144
PkrI GCNGC 1 cut(s) 939
PleI GAGTC 5 cut(s) 181, 452, 628, 971, 1225
PpsI GAGTC 5 cut(s) 181, 452, 628, 971, 1225
PsiI TTATAA 1 cut(s) 1181
Psp124BI GAGCTC 1 cut(s) 923
Psp6I CCWGG 3 cut(s) 554, 959, 1214
PspFI CCCAGC 1 cut(s) 542
PspGI CCWGG 3 cut(s) 554, 959, 1214
PspN4I GGNNCC 1 cut(s) 438
PspPI GGNCC 1 cut(s) 248
PstI CTGCAG 1 cut(s) 187
PsuI RGATCY 4 cut(s) 436, 472, 965, 1210
RseI CAYNNNNRTG 1 cut(s) 635
SacI GAGCTC 1 cut(s) 923
SaqAI TTAA 3 cut(s) 21, 81, 234
SatI GCNGC 1 cut(s) 938
Sau3AI GATC 6 cut(s) 106, 436, 472, 829, 965, 1210
Sau96I GGNCC 1 cut(s) 248
SchI GAGTC 5 cut(s) 182, 452, 629, 971, 1225
ScrFI CCNGG 6 cut(s) 556, 815, 893, 945, 961, 1216
SduI GDGCHC 4 cut(s) 787, 796, 923, 959
SfaNI GCATC 3 cut(s) 406, 1028, 1228
SfcI CTRYAG 1 cut(s) 183
SinI GGWCC 1 cut(s) 248
SmiMI CAYNNNNRTG 1 cut(s) 635
SmlI CTYRAG 2 cut(s) 1233, 1268
SmoI CTYRAG 2 cut(s) 1233, 1268
SseBI AGGCCT 1 cut(s) 760
SsiI CCGC 2 cut(s) 85, 433
SspMI CTAG 1 cut(s) 138
SstI GAGCTC 1 cut(s) 923
StuI AGGCCT 1 cut(s) 760
StyD4I CCNGG 6 cut(s) 554, 813, 891, 943, 959, 1214
TaaI ACNGT 3 cut(s) 170, 199, 716
TaqI TCGA 2 cut(s) 481, 491
TfiI GAWTC 2 cut(s) 64, 144
Tru1I TTAA 3 cut(s) 21, 81, 234
Tru9I TTAA 3 cut(s) 21, 81, 234
TscAI CASTG 5 cut(s) 427, 721, 734, 839, 1080
TseFI GTSAC 2 cut(s) 524, 884
TseI GCWGC 1 cut(s) 937
Tsp45I GTSAC 2 cut(s) 524, 884
TspDTI ATGAA 4 cut(s) 141, 641, 689, 920
TspGWI ACGGA 1 cut(s) 104
TspRI CASTG 5 cut(s) 427, 721, 734, 839, 1080
VneI GTGCAC 1 cut(s) 783
VpaK11BI GGWCC 1 cut(s) 248
XapI RAATTY 3 cut(s) 805, 1140, 1263
XceI RCATGY 1 cut(s) 640
XmnI GAANNNNTTC 1 cut(s) 132
XspI CTAG 1 cut(s) 138
Zsp2I ATGCAT 1 cut(s) 1243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.