Prupe.1G166600_v2.0.a1

Xyloglucan galactosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000894
Physical Location & Seq
Reverse (-)
13530229 .. 13532164
1936 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G166600.1

Sequence Viewer

Length: 1257 bp
ATGCATGATGATCTTCCTGAAAAATTCAACCATGACTTGCTCAAGAACTGTAAATATCTTACTAGGGGGACTGATAAGCCCAATTTGTGTCCTTACTTTGAGAATTTTGGTTTTGGTCCTGAAATTGAGAACAATGAAGGGGTTTTGGCCAATGAGAGTTGGTTTTCCACAAACCAGTTCTTGTTGGAGTTCATATTCCACAACAAGATGAAGCATTATGAGTGTTTGACAAAAAATTCCACTCTGGCTTCGGCCATTTATGTCCCATTCTATGCTGGCCTTGATGCCAGCCTCCATCTGTGGGATTCTAATCTCACGGTCAGAGACACTTCGGCGAAAGAGCTTGTCGATTGGCTTTCGAGAAAACCCGAATGGAAGAAAATGTTGGGGAGAGACCATTTCTTGGTTGCTGGGAGGATTTCTTGGGATTTCAGGAGGCAAACAGATGATGTTTCTGATTGGGGTAGTAAACTGAGGTGGTTGCCTGAGTCTATGAACATGAGTATGTTATCAGTTGAAGGAAGCTCATGGAAAAATGACTATGCTATACCATACCCTACATATTTTCATCCTTCAAAGGACATTGAATTGATTCAATGGCAGGACAGAATGAGAAAGCTAGAAAGGCCTTACTTGTTCACTTTTGCTGGGGCACCAAGGCCTGACCAGCAGAGTTCGATTCGGGGCAAAATTATAGATCAGTGCCTAGCTTCAAGCACTTGTAAGTTAATAGATTGTAGTTCTGCTGGGAACATTGATTGTGACAACCCGGCTAGTGTAATGAGGGTGTTTCAGAGCTCAGTTTATTGCTTGCAGCCTGGAGGGGATTCATACACTAGGAGATCAGCTTTTGATTCTATTTTGGCTGGTTGTATACCCGTTTTTTTCCATCCGGGTACCGCCTATTCTCAATACTTGTGGCATTTGCCAAAGAATCATAGCAGCTACTCTGTGTTTATTCCAGTGAGGGAGGCAAAAGATGTGCCAGCCAGCATTGAGGAAATCTTGCTTGGCATTTCAGAGGATAAGGAATTTGCCATGAGAGAGGAGGTTATAAGGCTAATTCCAAACCTGGTTTATGCAGATCCCAGGTCAAGATTAGAGACCGCAGACGCATTCGATTTAGCTGTGAAAGGAATTCTTGAAAGGATAGAGGATGTTAGGGAGGTGATTAGGGAGGGGAAGGATCCTAGTGTTGGTTTTGCTGATGAGGATAGTTACAAGTACACATTTCCTCAGACACAAGAACAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

419

Amino Acids

48.1

Weight (kDa)

5.33

Isoelectric Point (pI)

54.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1055
Acc65I GGTACC 1 cut(s) 896
AccB1I GGYRCC 2 cut(s) 652, 896
AccB7I CCANNNNNTGG 1 cut(s) 403
AccI GTMKAC 1 cut(s) 874
AciI CCGC 2 cut(s) 900, 1107
AclWI GGATC 3 cut(s) 1079, 1181, 1194
AcoI YGGCCR 2 cut(s) 147, 252
AcsI RAATTY 5 cut(s) 23, 103, 235, 1031, 1137
AfaI GTAC 2 cut(s) 898, 1226
AfiI CCNNNNNNNGG 3 cut(s) 301, 403, 1196
AgsI TTSAA 7 cut(s) 28, 518, 576, 587, 596, 714, 1145
AjnI CCWGG 3 cut(s) 817, 1071, 1088
AjuI GAANNNNNNNTTGG 4 cut(s) 368, 400, 993, 1025
AluBI AGCT 8 cut(s) 343, 525, 619, 710, 798, 848, 945, 1127
AluI AGCT 8 cut(s) 343, 525, 619, 710, 798, 848, 945, 1127
Alw21I GWGCWC 1 cut(s) 800
Alw26I GTCTC 3 cut(s) 318, 387, 1097
AlwI GGATC 3 cut(s) 1079, 1181, 1194
AoxI GGCC 5 cut(s) 147, 252, 277, 626, 659
ApeKI GCWGC 2 cut(s) 814, 942
ApoI RAATTY 5 cut(s) 23, 103, 235, 1031, 1137
Asp700I GAANNNNTTC 1 cut(s) 591
Asp718I GGTACC 1 cut(s) 896
AspS9I GGNCC 1 cut(s) 116
AsuC2I CCSGG 2 cut(s) 770, 894
AsuHPI GGTGA 1 cut(s) 1180
AvaII GGWCC 1 cut(s) 116
BaeGI GKGCMC 1 cut(s) 655
BalI TGGCCA 1 cut(s) 149
BamHI GGATCC 1 cut(s) 1186
BanI GGYRCC 2 cut(s) 652, 896
BanII GRGCYC 1 cut(s) 800
Bbv12I GWGCWC 1 cut(s) 800
BbvI GCAGC 2 cut(s) 826, 954
BccI CCATC 2 cut(s) 303, 897
BciT130I CCWGG 3 cut(s) 819, 1073, 1090
BcnI CCSGG 2 cut(s) 770, 894
BcoDI GTCTC 3 cut(s) 318, 387, 1097
BfaI CTAG 6 cut(s) 63, 620, 707, 774, 837, 1191
BisI GCNGC 2 cut(s) 815, 943
BlsI GCNGC 2 cut(s) 816, 944
Bme1390I CCNGG 5 cut(s) 770, 819, 894, 1073, 1090
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 3 cut(s) 654, 898, 1188
BmrFI CCNGG 5 cut(s) 770, 819, 894, 1073, 1090
BmsI GCATC 1 cut(s) 274
BpmI CTGGAG 1 cut(s) 840
BpuEI CTTGAG 1 cut(s) 26
BpuMI CCSGG 2 cut(s) 770, 894
BsaBI GATNNNNATC 1 cut(s) 309
BsaI GGTCTC 2 cut(s) 387, 1097
BsaJI CCNNGG 2 cut(s) 656, 1088
Bsc4I CCNNNNNNNGG 3 cut(s) 301, 403, 1196
Bse1I ACTGG 2 cut(s) 175, 962
Bse8I GATNNNNATC 1 cut(s) 309
BseBI CCWGG 3 cut(s) 819, 1073, 1090
BseDI CCNNGG 2 cut(s) 656, 1088
BseGI GGATG 3 cut(s) 568, 889, 1162
BseJI GATNNNNATC 1 cut(s) 309
BseLI CCNNNNNNNGG 3 cut(s) 301, 403, 1196
BseMII CTCAG 4 cut(s) 464, 477, 813, 1250
BseNI ACTGG 2 cut(s) 175, 962
BseRI GAGGAG 1 cut(s) 1061
BseSI GKGCMC 1 cut(s) 655
BseXI GCAGC 2 cut(s) 826, 954
BseYI CCCAGC 3 cut(s) 410, 647, 746
BshFI GGCC 5 cut(s) 149, 254, 279, 628, 661
BshNI GGYRCC 2 cut(s) 652, 896
BsiHKAI GWGCWC 1 cut(s) 800
BsiSI CCGG 2 cut(s) 770, 893
BslFI GGGAC 2 cut(s) 82, 248
BslI CCNNNNNNNGG 3 cut(s) 301, 403, 1196
BsmAI GTCTC 3 cut(s) 318, 387, 1097
BsmFI GGGAC 2 cut(s) 82, 248
BsmI GAATGC 1 cut(s) 1115
BsnI GGCC 5 cut(s) 149, 254, 279, 628, 661
Bso31I GGTCTC 2 cut(s) 387, 1097
Bsp1286I GDGCHC 2 cut(s) 655, 800
Bsp143I GATC 5 cut(s) 10, 697, 842, 1084, 1186
BspACI CCGC 2 cut(s) 900, 1107
BspANI GGCC 5 cut(s) 149, 254, 279, 628, 661
BspCNI CTCAG 4 cut(s) 465, 478, 812, 1249
BspLI GGNNCC 3 cut(s) 654, 898, 1188
BspPI GGATC 3 cut(s) 1079, 1181, 1194
BspT107I GGYRCC 2 cut(s) 652, 896
BspTNI GGTCTC 2 cut(s) 387, 1097
BsrI ACTGG 2 cut(s) 175, 962
BssECI CCNNGG 2 cut(s) 656, 1088
BssMI GATC 5 cut(s) 10, 697, 842, 1084, 1186
BssNAI GTATAC 1 cut(s) 875
BssT1I CCWWGG 1 cut(s) 656
Bst1107I GTATAC 1 cut(s) 875
Bst2UI CCWGG 3 cut(s) 819, 1073, 1090
Bst4CI ACNGT 2 cut(s) 50, 319
BstC8I GCNNGC 5 cut(s) 277, 289, 812, 987, 991
BstDEI CTNAG 4 cut(s) 473, 486, 799, 1236
BstF5I GGATG 3 cut(s) 568, 889, 1162
BstKTI GATC 5 cut(s) 13, 700, 845, 1087, 1189
BstMAI GTCTC 3 cut(s) 318, 387, 1097
BstMBI GATC 5 cut(s) 10, 697, 842, 1084, 1186
BstMWI GCNNNNNNNGC 2 cut(s) 625, 667
BstNI CCWGG 3 cut(s) 819, 1073, 1090
BstSCI CCNGG 5 cut(s) 768, 817, 892, 1071, 1088
BstSLI GKGCMC 1 cut(s) 655
BstV1I GCAGC 2 cut(s) 826, 954
BstX2I RGATCY 2 cut(s) 1084, 1186
BstYI RGATCY 2 cut(s) 1084, 1186
BstZ17I GTATAC 1 cut(s) 875
BsuRI GGCC 5 cut(s) 149, 254, 279, 628, 661
BtsCI GGATG 3 cut(s) 568, 889, 1162
BtsIMutI CAGTG 2 cut(s) 707, 969
Cac8I GCNNGC 5 cut(s) 277, 289, 812, 987, 991
Cfr13I GGNCC 1 cut(s) 116
CseI GACGC 1 cut(s) 1121
CsiI ACCWGGT 1 cut(s) 1071
Csp6I GTAC 2 cut(s) 897, 1225
CspCI CAANNNNNGTGG 2 cut(s) 899, 934
CviAII CATG 5 cut(s) 5, 32, 499, 528, 1039
CviQI GTAC 2 cut(s) 897, 1225
DdeI CTNAG 4 cut(s) 473, 486, 799, 1236
DpnI GATC 5 cut(s) 12, 699, 844, 1086, 1188
DpnII GATC 5 cut(s) 10, 697, 842, 1084, 1186
EaeI YGGCCR 2 cut(s) 147, 252
Ecl136II GAGCTC 1 cut(s) 798
Eco130I CCWWGG 1 cut(s) 656
Eco147I AGGCCT 2 cut(s) 628, 661
Eco24I GRGCYC 1 cut(s) 800
Eco31I GGTCTC 2 cut(s) 387, 1097
Eco47I GGWCC 1 cut(s) 116
Eco53kI GAGCTC 1 cut(s) 798
EcoICRI GAGCTC 1 cut(s) 798
EcoRI GAATTC 1 cut(s) 1137
EcoRII CCWGG 3 cut(s) 817, 1071, 1088
EcoT14I CCWWGG 1 cut(s) 656
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 800
ErhI CCWWGG 1 cut(s) 656
FaeI CATG 5 cut(s) 8, 35, 502, 531, 1042
FalI AAGNNNNNCTT 2 cut(s) 1125, 1157
FaqI GGGAC 2 cut(s) 82, 248
FatI CATG 5 cut(s) 4, 31, 498, 527, 1038
FblI GTMKAC 1 cut(s) 874
Fnu4HI GCNGC 2 cut(s) 815, 943
FokI GGATG 3 cut(s) 555, 876, 1169
FriOI GRGCYC 1 cut(s) 800
Fsp4HI GCNGC 2 cut(s) 815, 943
FspBI CTAG 6 cut(s) 63, 620, 707, 774, 837, 1191
GluI GCNGC 2 cut(s) 815, 943
GsaI CCCAGC 3 cut(s) 414, 651, 750
GsuI CTGGAG 1 cut(s) 840
HaeIII GGCC 5 cut(s) 149, 254, 279, 628, 661
HapII CCGG 2 cut(s) 770, 893
HgaI GACGC 1 cut(s) 1121
Hin1II CATG 5 cut(s) 8, 35, 502, 531, 1042
HinfI GANTC 7 cut(s) 305, 488, 592, 679, 827, 854, 934
HpaII CCGG 2 cut(s) 770, 893
HphI GGTGA 1 cut(s) 1180
Hpy166II GTNNAC 4 cut(s) 470, 639, 875, 1227
Hpy188I TCNGA 5 cut(s) 323, 457, 795, 1021, 1239
Hpy188III TCNNGA 7 cut(s) 17, 43, 119, 360, 433, 1095, 1142
Hpy8I GTNNAC 4 cut(s) 470, 639, 875, 1227
HpyAV CCTTC 4 cut(s) 131, 512, 582, 1177
HpyCH4III ACNGT 2 cut(s) 50, 319
HpyCH4V TGCA 3 cut(s) 4, 814, 1082
HpyF10VI GCNNNNNNNGC 2 cut(s) 625, 667
HpyF3I CTNAG 4 cut(s) 473, 486, 799, 1236
Hsp92II CATG 5 cut(s) 8, 35, 502, 531, 1042
KpnI GGTACC 1 cut(s) 900
Kzo9I GATC 5 cut(s) 10, 697, 842, 1084, 1186
Lsp1109I GCAGC 2 cut(s) 826, 954
LweI GCATC 1 cut(s) 274
MabI ACCWGGT 1 cut(s) 1071
MaeI CTAG 6 cut(s) 63, 620, 707, 774, 837, 1191
MaeIII GTNAC 2 cut(s) 761, 1217
MalI GATC 5 cut(s) 12, 699, 844, 1086, 1188
MboI GATC 5 cut(s) 10, 697, 842, 1084, 1186
MboII GAAGA 2 cut(s) 5, 388
MflI RGATCY 2 cut(s) 1084, 1186
MhlI GDGCHC 2 cut(s) 655, 800
MlsI TGGCCA 1 cut(s) 149
MluNI TGGCCA 1 cut(s) 149
MlyI GAGTC 1 cut(s) 497
MmeI TCCRAC 1 cut(s) 165
Mox20I TGGCCA 1 cut(s) 149
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 591
MscI TGGCCA 1 cut(s) 149
MseI TTAA 1 cut(s) 728
MslI CAYNNNNRTG 1 cut(s) 503
Msp20I TGGCCA 1 cut(s) 149
MspI CCGG 2 cut(s) 770, 893
MspR9I CCNGG 5 cut(s) 770, 819, 894, 1073, 1090
Mva1269I GAATGC 1 cut(s) 1115
MvaI CCWGG 3 cut(s) 819, 1073, 1090
MwoI GCNNNNNNNGC 2 cut(s) 625, 667
NciI CCSGG 2 cut(s) 770, 894
NdeII GATC 5 cut(s) 10, 697, 842, 1084, 1186
NlaIII CATG 5 cut(s) 8, 35, 502, 531, 1042
NlaIV GGNNCC 3 cut(s) 654, 898, 1188
NmuCI GTSAC 1 cut(s) 761
NsiI ATGCAT 1 cut(s) 6
PceI AGGCCT 2 cut(s) 628, 661
PctI GAATGC 1 cut(s) 1115
PdmI GAANNNNTTC 1 cut(s) 591
PfeI GAWTC 6 cut(s) 305, 592, 679, 827, 854, 934
PflMI CCANNNNNTGG 1 cut(s) 403
PkrI GCNGC 2 cut(s) 816, 944
PleI GAGTC 1 cut(s) 496
PpsI GAGTC 1 cut(s) 496
PsiI TTATAA 1 cut(s) 1055
Psp124BI GAGCTC 1 cut(s) 800
Psp6I CCWGG 3 cut(s) 817, 1071, 1088
PspFI CCCAGC 3 cut(s) 410, 647, 746
PspGI CCWGG 3 cut(s) 817, 1071, 1088
PspN4I GGNNCC 3 cut(s) 654, 898, 1188
PspPI GGNCC 1 cut(s) 116
PsuI RGATCY 2 cut(s) 1084, 1186
RsaI GTAC 2 cut(s) 898, 1226
RsaNI GTAC 2 cut(s) 897, 1225
RseI CAYNNNNRTG 1 cut(s) 503
SacI GAGCTC 1 cut(s) 800
SaqAI TTAA 1 cut(s) 728
SatI GCNGC 2 cut(s) 815, 943
Sau3AI GATC 5 cut(s) 10, 697, 842, 1084, 1186
Sau96I GGNCC 1 cut(s) 116
SchI GAGTC 1 cut(s) 497
ScrFI CCNGG 5 cut(s) 770, 819, 894, 1073, 1090
SduI GDGCHC 2 cut(s) 655, 800
SexAI ACCWGGT 1 cut(s) 1071
SfaNI GCATC 1 cut(s) 274
SinI GGWCC 1 cut(s) 116
SmiMI CAYNNNNRTG 1 cut(s) 503
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
SseBI AGGCCT 2 cut(s) 628, 661
SsiI CCGC 2 cut(s) 900, 1107
SspMI CTAG 6 cut(s) 63, 620, 707, 774, 837, 1191
SstI GAGCTC 1 cut(s) 800
StuI AGGCCT 2 cut(s) 628, 661
StyD4I CCNGG 5 cut(s) 768, 817, 892, 1071, 1088
StyI CCWWGG 1 cut(s) 656
TaaI ACNGT 2 cut(s) 50, 319
TaqI TCGA 4 cut(s) 348, 359, 677, 1119
TatI WGTACW 1 cut(s) 1224
TfiI GAWTC 6 cut(s) 305, 592, 679, 827, 854, 934
Tru1I TTAA 1 cut(s) 728
Tru9I TTAA 1 cut(s) 728
TscAI CASTG 2 cut(s) 707, 969
TseFI GTSAC 1 cut(s) 761
TseI GCWGC 2 cut(s) 814, 942
Tsp45I GTSAC 1 cut(s) 761
TspDTI ATGAA 6 cut(s) 150, 181, 224, 509, 557, 819
TspRI CASTG 2 cut(s) 707, 969
Van91I CCANNNNNTGG 1 cut(s) 403
VpaK11BI GGWCC 1 cut(s) 116
XapI RAATTY 5 cut(s) 23, 103, 235, 1031, 1137
XmiI GTMKAC 1 cut(s) 874
XmnI GAANNNNTTC 1 cut(s) 591
XspI CTAG 6 cut(s) 63, 620, 707, 774, 837, 1191
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.