Rh4CG190500

Xyloglucan galactosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000894
Physical Location & Seq
Reverse (-)
41029393 .. 41029833
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG190500.1

Sequence Viewer

Length: 441 bp
ATGATTTGCAACTGGAGATCCGCTTTTGACTCTTTCCTAGCTGGTTGTATCCCCGTTTTCTTTCATCCAGGTAGCGCTTATACCCAATACTTATGGCATCTACCAAAGAATCACACCAAGTATTCGGTGTTTATTCCGGTTATGGATGCAACAGATTTGAATGAAGTCAGCATTGAGAAAACCTTGCTCGGAATCTCAAGGGCCAAGGAACTAGCAATGAGAGAGGAGGTTATACGGCTTATACCAAACCTGGTGTATTCAGATCCCATGTCAACATTAGAGACCCCAGATGCATTTGATATAGCGGTCAAAAGAATTCTCCAGAGGATTGAAAATGTTAGGAAGGTGAGTAGAGAAGGGAAGGATCCTAGTATTGGATTTACAGAGGAGGAGGGTAACAAGTACAAATTCAATGTGTCTAAAGAAAAACAAATTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

146

Amino Acids

16.79

Weight (kDa)

6.31

Isoelectric Point (pI)

44.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 6 - 55 9.1e-10 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 21, 305
AclWI GGATC 4 cut(s) 12, 257, 359, 372
AcsI RAATTY 2 cut(s) 315, 407
AfaI GTAC 1 cut(s) 404
AfeI AGCGCT 1 cut(s) 76
AfiI CCNNNNNNNGG 1 cut(s) 374
AgsI TTSAA 3 cut(s) 160, 332, 412
AjnI CCWGG 2 cut(s) 67, 249
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
Alw26I GTCTC 1 cut(s) 275
AlwI GGATC 4 cut(s) 12, 257, 359, 372
Aor51HI AGCGCT 1 cut(s) 76
AoxI GGCC 1 cut(s) 201
ApoI RAATTY 2 cut(s) 315, 407
AspLEI GCGC 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 201
AsuHPI GGTGA 1 cut(s) 358
BamHI GGATCC 1 cut(s) 364
BceAI ACGGC 1 cut(s) 251
BciT130I CCWGG 2 cut(s) 69, 251
BciVI GTATCC 1 cut(s) 59
BcoDI GTCTC 1 cut(s) 275
BfaI CTAG 3 cut(s) 38, 212, 369
BfoI RGCGCY 1 cut(s) 78
BfuI GTATCC 1 cut(s) 59
Bme1390I CCNGG 2 cut(s) 69, 251
BmgT120I GGNCC 1 cut(s) 201
BmiI GGNNCC 1 cut(s) 366
BmrFI CCNGG 2 cut(s) 69, 251
BmsI GCATC 3 cut(s) 106, 136, 280
BpmI CTGGAG 2 cut(s) 34, 305
BpuEI CTTGAG 1 cut(s) 181
BsaI GGTCTC 1 cut(s) 275
BsaJI CCNNGG 1 cut(s) 204
BsaWI WCCGGW 1 cut(s) 136
Bsc4I CCNNNNNNNGG 1 cut(s) 374
Bse1I ACTGG 1 cut(s) 17
Bse3DI GCAATG 1 cut(s) 222
BseBI CCWGG 2 cut(s) 69, 251
BseDI CCNNGG 1 cut(s) 204
BseGI GGATG 2 cut(s) 64, 151
BseLI CCNNNNNNNGG 1 cut(s) 374
BseMI GCAATG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 17
BseRI GAGGAG 3 cut(s) 239, 401, 404
BshFI GGCC 1 cut(s) 203
BsiSI CCGG 1 cut(s) 137
BslI CCNNNNNNNGG 1 cut(s) 374
BsmAI GTCTC 1 cut(s) 275
BsnI GGCC 1 cut(s) 203
Bso31I GGTCTC 1 cut(s) 275
Bsp143I GATC 3 cut(s) 17, 262, 364
BspACI CCGC 2 cut(s) 21, 305
BspANI GGCC 1 cut(s) 203
BspLI GGNNCC 1 cut(s) 366
BspPI GGATC 4 cut(s) 12, 257, 359, 372
BspTNI GGTCTC 1 cut(s) 275
BsrDI GCAATG 1 cut(s) 222
BsrI ACTGG 1 cut(s) 17
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 3 cut(s) 17, 262, 364
BssT1I CCWWGG 1 cut(s) 204
Bst2UI CCWGG 2 cut(s) 69, 251
BstF5I GGATG 2 cut(s) 64, 151
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 3 cut(s) 20, 265, 367
BstMAI GTCTC 1 cut(s) 275
BstMBI GATC 3 cut(s) 17, 262, 364
BstNI CCWGG 2 cut(s) 69, 251
BstSCI CCNGG 2 cut(s) 67, 249
BstX2I RGATCY 3 cut(s) 17, 262, 364
BstYI RGATCY 3 cut(s) 17, 262, 364
BsuI GTATCC 1 cut(s) 59
BsuRI GGCC 1 cut(s) 203
BtsCI GGATG 2 cut(s) 64, 151
CfoI GCGC 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 201
CsiI ACCWGGT 1 cut(s) 249
Csp6I GTAC 1 cut(s) 403
CviAII CATG 1 cut(s) 268
CviJI RGCY 3 cut(s) 41, 203, 238
CviKI_1 RGCY 3 cut(s) 41, 203, 238
CviQI GTAC 1 cut(s) 403
DpnI GATC 3 cut(s) 19, 264, 366
DpnII GATC 3 cut(s) 17, 262, 364
Eco130I CCWWGG 1 cut(s) 204
Eco31I GGTCTC 1 cut(s) 275
Eco47III AGCGCT 1 cut(s) 76
EcoRI GAATTC 1 cut(s) 315
EcoRII CCWGG 2 cut(s) 67, 249
EcoT14I CCWWGG 1 cut(s) 204
EcoT22I ATGCAT 1 cut(s) 295
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 1 cut(s) 271
FaiI YATR 7 cut(s) 81, 94, 143, 233, 242, 269, 302
FatI CATG 1 cut(s) 267
FokI GGATG 2 cut(s) 51, 158
FspBI CTAG 3 cut(s) 38, 212, 369
GlaI GCGC 1 cut(s) 76
GsuI CTGGAG 2 cut(s) 34, 305
HaeII RGCGCY 1 cut(s) 78
HaeIII GGCC 1 cut(s) 203
HapII CCGG 1 cut(s) 137
HhaI GCGC 1 cut(s) 77
Hin1II CATG 1 cut(s) 271
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HincII GTYRAC 1 cut(s) 273
HindII GTYRAC 1 cut(s) 273
HinfI GANTC 3 cut(s) 29, 109, 192
HpaII CCGG 1 cut(s) 137
HphI GGTGA 1 cut(s) 358
Hpy166II GTNNAC 1 cut(s) 273
Hpy188I TCNGA 2 cut(s) 191, 262
Hpy188III TCNNGA 1 cut(s) 322
Hpy8I GTNNAC 1 cut(s) 273
HpyAV CCTTC 3 cut(s) 337, 350, 355
HpyCH4V TGCA 3 cut(s) 9, 149, 293
Hsp92II CATG 1 cut(s) 271
HspAI GCGC 1 cut(s) 75
Kzo9I GATC 3 cut(s) 17, 262, 364
LpnPI CCDG 8 cut(s) 27, 54, 81, 150, 236, 263, 300, 335
LweI GCATC 3 cut(s) 106, 136, 280
MabI ACCWGGT 1 cut(s) 249
MaeI CTAG 3 cut(s) 38, 212, 369
MaeIII GTNAC 1 cut(s) 395
MalI GATC 3 cut(s) 19, 264, 366
MboI GATC 3 cut(s) 17, 262, 364
MflI RGATCY 3 cut(s) 17, 262, 364
MluCI AATT 3 cut(s) 315, 407, 432
MlyI GAGTC 1 cut(s) 23
MnlI CCTC 6 cut(s) 217, 220, 318, 379, 382, 385
Mph1103I ATGCAT 1 cut(s) 295
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 2 cut(s) 69, 251
MvaI CCWGG 2 cut(s) 69, 251
NdeII GATC 3 cut(s) 17, 262, 364
NlaIII CATG 1 cut(s) 271
NlaIV GGNNCC 1 cut(s) 366
NsiI ATGCAT 1 cut(s) 295
PfeI GAWTC 2 cut(s) 109, 192
PleI GAGTC 1 cut(s) 23
PpsI GAGTC 1 cut(s) 23
Psp6I CCWGG 2 cut(s) 67, 249
PspGI CCWGG 2 cut(s) 67, 249
PspN4I GGNNCC 1 cut(s) 366
PspPI GGNCC 1 cut(s) 201
PsuI RGATCY 3 cut(s) 17, 262, 364
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
Sau3AI GATC 3 cut(s) 17, 262, 364
Sau96I GGNCC 1 cut(s) 201
SchI GAGTC 1 cut(s) 23
ScrFI CCNGG 2 cut(s) 69, 251
SetI ASST 6 cut(s) 43, 73, 185, 231, 252, 348
SexAI ACCWGGT 1 cut(s) 249
SfaNI GCATC 3 cut(s) 106, 136, 280
SmlI CTYRAG 1 cut(s) 196
SmoI CTYRAG 1 cut(s) 196
Sse9I AATT 3 cut(s) 315, 407, 432
SsiI CCGC 2 cut(s) 21, 305
SspMI CTAG 3 cut(s) 38, 212, 369
StyD4I CCNGG 2 cut(s) 67, 249
StyI CCWWGG 1 cut(s) 204
TasI AATT 3 cut(s) 315, 407, 432
TatI WGTACW 1 cut(s) 402
TfiI GAWTC 2 cut(s) 109, 192
TspDTI ATGAA 2 cut(s) 53, 177
XapI RAATTY 2 cut(s) 315, 407
XspI CTAG 3 cut(s) 38, 212, 369
Zsp2I ATGCAT 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.