Rw4G014960

Xyloglucan galactosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000894
Physical Location & Seq
Reverse (-)
34467785 .. 34468795
1011 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G014960.1

Sequence Viewer

Length: 834 bp
ATGTGTCCATACTTGGAGAATTTCGGTTTTGGTCCAGAAATAAACAACTCTGAAGGGGTTTTAGCCAACGAAAGTTGGTACTCCACAAACCAGTTCTCATTAGATGTCATATTCCACAACAAGATGAAGCAGTATAAGTGCTTGACAAACAACTCCACTCTGGATTCGGCCATTTATATACCGATTTATGCTGGCCTCGAGGACAGTCTCCATTTGTGGGATCCCGACCTCACTGCAAGAGACTCTTTCGGTTTAGACTTTATTAAGTGGATCTCGAGAAGACCCGAATGGAAGAAAATGTGGGGCAGAGACCATTTGTTTGTTGTTGGGAGGATTTCATGGGATTTCAGAAGGAAAACAGACCACAATACTGATTGGGGTAGTAAATTGCGCTTCTTGCCAGAGTCCAAGAATATGACTATGTTGTCAATTGAAGGAAGCTCATGGACAAATGATATTGCTATACCATACCCTACAGGCTTTCACCCTGCAAAGGATAGTGAGGTGTTACAATGGCAGAAGAAAATGAGAAAACAAGAAAGGCCTTACTTGTTTGCTTTTGTTGGGGGACCGAGGCCTGAGCTAGAAACTTCAATTCGGGTTAAACTTATTGAACAGTGCCAAGCTTCAGGTAGCGCTTATACCCAATACTTATGGCATCTACCAAAGAATCACACCAAGTATTCGGTGTTTATTCCGGTTATGGATGCAACAGATTTGAATGAAGTCAGCATTGAGAAAACCTTGCTTGGAATCTCAAGGGCCAAGGAACTAGCAATGAGAGAGGAGGTTATACGGCTTATACCAAACCTGGTGTATTCAGATCCCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

277

Amino Acids

32.27

Weight (kDa)

6.67

Isoelectric Point (pI)

41.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 24 - 210 9.7e-43 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 424
AbsI CCTCGAGG 1 cut(s) 197
AclWI GGATC 4 cut(s) 215, 228, 278, 818
AcoI YGGCCR 1 cut(s) 168
AcsI RAATTY 1 cut(s) 19
AcuI CTGAAG 2 cut(s) 72, 612
AfaI GTAC 1 cut(s) 80
AfeI AGCGCT 1 cut(s) 637
AfiI CCNNNNNNNGG 2 cut(s) 217, 493
AgsI TTSAA 4 cut(s) 434, 594, 614, 721
AjnI CCWGG 1 cut(s) 810
AluBI AGCT 3 cut(s) 441, 583, 626
AluI AGCT 3 cut(s) 441, 583, 626
Alw26I GTCTC 3 cut(s) 212, 234, 303
AlwI GGATC 4 cut(s) 215, 228, 278, 818
Ama87I CYCGRG 2 cut(s) 197, 274
Aor51HI AGCGCT 1 cut(s) 637
AoxI GGCC 5 cut(s) 168, 193, 542, 575, 762
ApoI RAATTY 1 cut(s) 19
ArsI GACNNNNNNTTYG 2 cut(s) 302, 334
AspLEI GCGC 2 cut(s) 393, 638
AspS9I GGNCC 3 cut(s) 32, 569, 762
AsuHPI GGTGA 1 cut(s) 476
AvaI CYCGRG 2 cut(s) 197, 274
AvaII GGWCC 2 cut(s) 32, 569
BamHI GGATCC 1 cut(s) 220
BbsI GAAGAC 1 cut(s) 286
BceAI ACGGC 1 cut(s) 812
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BciT130I CCWGG 1 cut(s) 812
BcoDI GTCTC 3 cut(s) 212, 234, 303
BfaI CTAG 2 cut(s) 584, 773
BfmI CTRYAG 1 cut(s) 474
BfoI RGCGCY 1 cut(s) 639
Bme1390I CCNGG 1 cut(s) 812
Bme18I GGWCC 2 cut(s) 32, 569
BmeT110I CYCGRG 2 cut(s) 197, 274
BmgT120I GGNCC 3 cut(s) 32, 569, 762
BmiI GGNNCC 2 cut(s) 222, 570
BmrFI CCNGG 1 cut(s) 812
BmsI GCATC 2 cut(s) 667, 697
BpiI GAAGAC 1 cut(s) 286
Bpu10I CCTNAGC 1 cut(s) 579
BpuEI CTTGAG 1 cut(s) 742
BsaI GGTCTC 1 cut(s) 303
BsaJI CCNNGG 2 cut(s) 572, 765
BsaWI WCCGGW 1 cut(s) 697
Bsc4I CCNNNNNNNGG 2 cut(s) 217, 493
Bse1I ACTGG 1 cut(s) 91
Bse3DI GCAATG 1 cut(s) 783
BseBI CCWGG 1 cut(s) 812
BseDI CCNNGG 2 cut(s) 572, 765
BseGI GGATG 1 cut(s) 712
BseLI CCNNNNNNNGG 2 cut(s) 217, 493
BseMI GCAATG 1 cut(s) 783
BseMII CTCAG 1 cut(s) 570
BseNI ACTGG 1 cut(s) 91
BseRI GAGGAG 1 cut(s) 800
BshFI GGCC 5 cut(s) 170, 195, 544, 577, 764
BsiHKCI CYCGRG 2 cut(s) 197, 274
BsiSI CCGG 1 cut(s) 698
BslFI GGGAC 1 cut(s) 582
BslI CCNNNNNNNGG 2 cut(s) 217, 493
BsmAI GTCTC 3 cut(s) 212, 234, 303
BsmFI GGGAC 1 cut(s) 582
BsnI GGCC 5 cut(s) 170, 195, 544, 577, 764
Bso31I GGTCTC 1 cut(s) 303
BsoBI CYCGRG 2 cut(s) 197, 274
Bsp143I GATC 3 cut(s) 220, 270, 823
BspANI GGCC 5 cut(s) 170, 195, 544, 577, 764
BspCNI CTCAG 1 cut(s) 571
BspLI GGNNCC 2 cut(s) 222, 570
BspPI GGATC 4 cut(s) 215, 228, 278, 818
BspTNI GGTCTC 1 cut(s) 303
BsrDI GCAATG 1 cut(s) 783
BsrI ACTGG 1 cut(s) 91
BssECI CCNNGG 2 cut(s) 572, 765
BssMI GATC 3 cut(s) 220, 270, 823
BssT1I CCWWGG 1 cut(s) 765
Bst2UI CCWGG 1 cut(s) 812
Bst4CI ACNGT 2 cut(s) 206, 618
BstC8I GCNNGC 1 cut(s) 193
BstDEI CTNAG 1 cut(s) 579
BstF5I GGATG 1 cut(s) 712
BstH2I RGCGCY 1 cut(s) 639
BstHHI GCGC 2 cut(s) 393, 638
BstKTI GATC 3 cut(s) 223, 273, 826
BstMAI GTCTC 3 cut(s) 212, 234, 303
BstMBI GATC 3 cut(s) 220, 270, 823
BstMWI GCNNNNNNNGC 1 cut(s) 397
BstNI CCWGG 1 cut(s) 812
BstSCI CCNGG 1 cut(s) 810
BstSFI CTRYAG 1 cut(s) 474
BstV2I GAAGAC 1 cut(s) 286
BstX2I RGATCY 3 cut(s) 220, 270, 823
BstYI RGATCY 3 cut(s) 220, 270, 823
BsuRI GGCC 5 cut(s) 170, 195, 544, 577, 764
BtsCI GGATG 1 cut(s) 712
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 2 cut(s) 231, 623
Cac8I GCNNGC 1 cut(s) 193
CfoI GCGC 2 cut(s) 393, 638
Cfr13I GGNCC 3 cut(s) 32, 569, 762
CsiI ACCWGGT 1 cut(s) 810
Csp6I GTAC 1 cut(s) 79
CviAII CATG 3 cut(s) 339, 444, 829
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 1 cut(s) 579
DpnI GATC 3 cut(s) 222, 272, 825
DpnII GATC 3 cut(s) 220, 270, 823
DrdI GACNNNNNNGTC 1 cut(s) 424
DseDI GACNNNNNNGTC 1 cut(s) 424
EaeI YGGCCR 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 765
Eco147I AGGCCT 2 cut(s) 544, 577
Eco31I GGTCTC 1 cut(s) 303
Eco47I GGWCC 2 cut(s) 32, 569
Eco47III AGCGCT 1 cut(s) 637
Eco57I CTGAAG 2 cut(s) 72, 612
Eco88I CYCGRG 2 cut(s) 197, 274
EcoRII CCWGG 1 cut(s) 810
EcoT14I CCWWGG 1 cut(s) 765
ErhI CCWWGG 1 cut(s) 765
FaeI CATG 3 cut(s) 342, 447, 832
FalI AAGNNNNNCTT 2 cut(s) 229, 261
FaqI GGGAC 1 cut(s) 582
FatI CATG 3 cut(s) 338, 443, 828
FokI GGATG 1 cut(s) 719
FspBI CTAG 2 cut(s) 584, 773
GlaI GCGC 2 cut(s) 392, 637
HaeII RGCGCY 1 cut(s) 639
HaeIII GGCC 5 cut(s) 170, 195, 544, 577, 764
HapII CCGG 1 cut(s) 698
HhaI GCGC 2 cut(s) 393, 638
Hin1II CATG 3 cut(s) 342, 447, 832
Hin6I GCGC 2 cut(s) 391, 636
HinP1I GCGC 2 cut(s) 391, 636
HindIII AAGCTT 1 cut(s) 624
HinfI GANTC 5 cut(s) 164, 242, 404, 670, 753
HpaII CCGG 1 cut(s) 698
HphI GGTGA 1 cut(s) 476
Hpy188I TCNGA 3 cut(s) 52, 350, 823
Hpy188III TCNNGA 5 cut(s) 35, 161, 224, 274, 276
HpyAV CCTTC 3 cut(s) 47, 345, 428
HpyCH4III ACNGT 2 cut(s) 206, 618
HpyCH4V TGCA 3 cut(s) 236, 491, 710
HpyF10VI GCNNNNNNNGC 1 cut(s) 397
HpyF3I CTNAG 1 cut(s) 579
Hsp92II CATG 3 cut(s) 342, 447, 832
HspAI GCGC 2 cut(s) 391, 636
Kzo9I GATC 3 cut(s) 220, 270, 823
LweI GCATC 2 cut(s) 667, 697
MabI ACCWGGT 1 cut(s) 810
MaeI CTAG 2 cut(s) 584, 773
MaeIII GTNAC 1 cut(s) 507
MalI GATC 3 cut(s) 222, 272, 825
MboI GATC 3 cut(s) 220, 270, 823
MboII GAAGA 3 cut(s) 291, 304, 532
MfeI CAATTG 1 cut(s) 429
MflI RGATCY 3 cut(s) 220, 270, 823
MluCI AATT 4 cut(s) 19, 386, 429, 594
MlyI GAGTC 2 cut(s) 236, 413
MnlI CCTC 8 cut(s) 193, 206, 239, 324, 496, 567, 778, 781
MseI TTAA 2 cut(s) 264, 603
MspI CCGG 1 cut(s) 698
MspR9I CCNGG 1 cut(s) 812
MunI CAATTG 1 cut(s) 429
MvaI CCWGG 1 cut(s) 812
MwoI GCNNNNNNNGC 1 cut(s) 397
NdeII GATC 3 cut(s) 220, 270, 823
NlaIII CATG 3 cut(s) 342, 447, 832
NlaIV GGNNCC 2 cut(s) 222, 570
PaeR7I CTCGAG 2 cut(s) 197, 274
PceI AGGCCT 2 cut(s) 544, 577
PfeI GAWTC 3 cut(s) 164, 670, 753
PleI GAGTC 2 cut(s) 236, 412
PpsI GAGTC 2 cut(s) 236, 412
Psp6I CCWGG 1 cut(s) 810
PspGI CCWGG 1 cut(s) 810
PspN4I GGNNCC 2 cut(s) 222, 570
PspPI GGNCC 3 cut(s) 32, 569, 762
PspXI VCTCGAGB 1 cut(s) 197
PsuI RGATCY 3 cut(s) 220, 270, 823
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
SaqAI TTAA 2 cut(s) 264, 603
Sau3AI GATC 3 cut(s) 220, 270, 823
Sau96I GGNCC 3 cut(s) 32, 569, 762
SchI GAGTC 2 cut(s) 236, 413
ScrFI CCNGG 1 cut(s) 812
SetI ASST 9 cut(s) 231, 443, 507, 585, 628, 634, 746, 792, 813
SexAI ACCWGGT 1 cut(s) 810
SfaNI GCATC 2 cut(s) 667, 697
SfcI CTRYAG 1 cut(s) 474
Sfr274I CTCGAG 2 cut(s) 197, 274
SinI GGWCC 2 cut(s) 32, 569
SlaI CTCGAG 2 cut(s) 197, 274
SmlI CTYRAG 3 cut(s) 197, 274, 757
SmoI CTYRAG 3 cut(s) 197, 274, 757
Sse9I AATT 4 cut(s) 19, 386, 429, 594
SseBI AGGCCT 2 cut(s) 544, 577
SspMI CTAG 2 cut(s) 584, 773
StuI AGGCCT 2 cut(s) 544, 577
StyD4I CCNGG 1 cut(s) 810
StyI CCWWGG 1 cut(s) 765
TaaI ACNGT 2 cut(s) 206, 618
TaqI TCGA 2 cut(s) 198, 275
TaqII GACCGA 1 cut(s) 586
TasI AATT 4 cut(s) 19, 386, 429, 594
TfiI GAWTC 3 cut(s) 164, 670, 753
Tru1I TTAA 2 cut(s) 264, 603
Tru9I TTAA 2 cut(s) 264, 603
TscAI CASTG 2 cut(s) 238, 623
TspDTI ATGAA 3 cut(s) 140, 327, 738
TspRI CASTG 2 cut(s) 238, 623
VpaK11BI GGWCC 2 cut(s) 32, 569
XapI RAATTY 1 cut(s) 19
XhoI CTCGAG 2 cut(s) 197, 274
XspI CTAG 2 cut(s) 584, 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.