Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000894

Physical Location & Seq

Genomic Coordinates Reverse (-)

19110340 .. 19111432

Gene Structure 1093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0120400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGTTGCTTCTGCGGGTAACTTCAACCAAGACTTTAAAATTACATGGGGGGACGGTCGAGCCAAGATACTCAACGACGGTCAACTTCTTACTCTCTCGCTCGACAAAGCCTCTGGCTCTGGTTTTGAATCCCAAAACGAATATCTATTCGGCAAGATTGACATGCAGCTCAAGCTTGTCGCCGGAAACTCTGCTGGAACTGTCACAGCCTATTATTTGAAATCAGAAGGGTCTACTTGGGATGAGATAGACTTCGAGTTCTTGGGCAACTTGAGTGGCGACCCTTACATTCTTCACACCAATATCTTCAGCCAAGGCAAAGGAAACCGAGAGCAGCAATTTCACCTCTGGTTCGACCCAACTGCTGATTTCCACACCTATTCCATTCTCTGGAATCCACAGCGCATTGTTTTTTCAGTTGATGGCACTCCCATTAGAGAGTTCAAGAATCAAGAGTCGAAAGGTGTTCCATTTTTGAAGAGCCAAGCAATGAGAATACACTCGAGCCTTTGGAACGCCGATGATTGGGCAACAAGAGGTGGACTTGTGAAGACAGATTGGAGTGCAACTCCTTTCACTGCCTCTTACAGGAATTTCAATGCTGAAGCTTGCATTTGGTCTTCTGGAGCATCTTCTTGCAGTTCAACTAGTACTCAAAATGGCGATTGGTTATCACAAGAGCTGGACAGTACAAGTCAAGAAAGGATGAAATGGGTGCAGAACAACTACCTGATCTACAATTACTGCGCAGATGTCAAGCGGTTTGCTCAGGGCCTCCCTGTAGAATGCAACACTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

266

Amino Acids

29.87

Weight (kDa)

5.12

Isoelectric Point (pI)

26.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	8 - 188	7e-66	Glycosyl hydrolases family 16
XET_C	PF06955	220 - 263	5.4e-19	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13990 AT4G13990
fragaria_vesca	FvH4_4g13210 FvH4_4g13212 FvH4_4g13213 FvH4_4g13214 FvH4_4g13214 FvH4_4g13214
malus_domestica	MD00G1064500.v1.1 MD00G1064600.v1.1 MD04G1017500.v1.1 MD04G1017600.v1.1 MD04G1017700.v1.1 MD04G1017900.v1.1
prunus_persica	Prupe.1G165700_v2.0.a1 Prupe.1G165800_v2.0.a1 Prupe.1G166100_v2.0.a1 Prupe.1G166200_v2.0.a1 Prupe.1G166300_v2.0.a1 Prupe.1G166600_v2.0.a1
pyrus_communis	pycom04g01400 pycom04g01410 pycom420g00900 pycom420g00910
rosa_chinensis	RchiOBHm_Chr1g0331261 RchiOBHm_Chr4g0413361 RchiOBHm_Chr4g0413371 RchiOBHm_Chr4g0413411
rosa_laevigata	RLG00000008220 RLG00000008221 RLG00000008222 RLG00000008223
rosa_multiflora	Rmu_sc0005828.1_g000002 Rmu_sc0007671.1_g000003 Rmu_sc0007671.1_g000004 Rmu_sc0007671.1_g000007 Rmu_sc0007671.1_g000010 Rmu_sc0009573.1_g000011 Rmu_sc0009573.1_g000012
rosa_roxburghii	Rroxscaffold_5G00357290 Rroxscaffold_5G00357300 Rroxscaffold_5G00357320
rosa_rugosa	Rorug04G0120200 Rorug04G0120300 Rorug04G0120400 Rorug04G0120500
rosa_samantha	Rh1AG117000 Rh4AG179600 Rh4AG179700 Rh4AG179800 Rh4BG178700 Rh4BG178800 Rh4BG178900 Rh4CG190200 Rh4CG190400 Rh4CG190500 Rh4CG190600 Rh4CG190700 Rh4DG174600 Rh4DG174700 Rh4DG174900
rosa_wichuraiana	Rw4G014930 Rw4G014940 Rw4G014960 Rw4G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	748
AccB7I	CCANNNNNTGG	1 cut(s)	390
AccI	GTMKAC	1 cut(s)	233
AciI	CCGC	2 cut(s)	14, 760
AcsI	RAATTY	1 cut(s)	592
AcuI	CTGAAG	2 cut(s)	292, 624
AfaI	GTAC	2 cut(s)	652, 691
AfiI	CCNNNNNNNGG	3 cut(s)	390, 525, 588
AgsI	TTSAA	7 cut(s)	25, 128, 220, 445, 478, 598, 645
AhlI	ACTAGT	1 cut(s)	647
AluBI	AGCT	4 cut(s)	169, 175, 608, 682
AluI	AGCT	4 cut(s)	169, 175, 608, 682
Ama87I	CYCGRG	1 cut(s)	502
AoxI	GGCC	1 cut(s)	772
ApeKI	GCWGC	2 cut(s)	166, 334
ApoI	RAATTY	1 cut(s)	592
AspLEI	GCGC	2 cut(s)	405, 749
AspS9I	GGNCC	1 cut(s)	772
AsuHPI	GGTGA	1 cut(s)	335
AvaI	CYCGRG	1 cut(s)	502
BbsI	GAAGAC	2 cut(s)	557, 612
BbvI	GCAGC	2 cut(s)	178, 346
BccI	CCATC	1 cut(s)	416
BcgI	CGANNNNNNTGC	2 cut(s)	344, 378
BcuI	ACTAGT	1 cut(s)	647
BfaI	CTAG	1 cut(s)	648
BfmI	CTRYAG	1 cut(s)	780
BisI	GCNGC	2 cut(s)	167, 335
BlsI	GCNGC	2 cut(s)	168, 336
BmcAI	AGTACT	1 cut(s)	652
BmeT110I	CYCGRG	1 cut(s)	502
BmgT120I	GGNCC	1 cut(s)	772
BmsI	GCATC	1 cut(s)	638
BpiI	GAAGAC	2 cut(s)	557, 612
BplI	GAGNNNNNCTC	2 cut(s)	553, 585
BpmI	CTGGAG	1 cut(s)	645
Bpu10I	CCTNAGC	1 cut(s)	768
BpuEI	CTTGAG	2 cut(s)	155, 292
BsaJI	CCNNGG	1 cut(s)	313
Bsc4I	CCNNNNNNNGG	3 cut(s)	390, 525, 588
Bse3DI	GCAATG	1 cut(s)	495
BseDI	CCNNGG	1 cut(s)	313
BseGI	GGATG	2 cut(s)	247, 711
BseLI	CCNNNNNNNGG	3 cut(s)	390, 525, 588
BseMI	GCAATG	1 cut(s)	495
BseMII	CTCAG	1 cut(s)	782
BseXI	GCAGC	2 cut(s)	178, 346
BsgI	GTGCAG	1 cut(s)	737
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	1 cut(s)	774
BsiEI	CGRYCG	1 cut(s)	58
BsiHKCI	CYCGRG	1 cut(s)	502
BsiSI	CCGG	1 cut(s)	183
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	3 cut(s)	390, 525, 588
BsmFI	GGGAC	1 cut(s)	65
BsmI	GAATGC	1 cut(s)	791
BsnI	GGCC	1 cut(s)	774
BsoBI	CYCGRG	1 cut(s)	502
Bsp143I	GATC	1 cut(s)	732
BspACI	CCGC	2 cut(s)	14, 760
BspANI	GGCC	1 cut(s)	774
BspCNI	CTCAG	1 cut(s)	781
BspQI	GCTCTTC	1 cut(s)	473
BsrDI	GCAATG	1 cut(s)	495
BssECI	CCNNGG	1 cut(s)	313
BssMI	GATC	1 cut(s)	732
BssT1I	CCWWGG	1 cut(s)	313
Bst4CI	ACNGT	4 cut(s)	56, 80, 202, 689
Bst6I	CTCTTC	1 cut(s)	473
BstC8I	GCNNGC	1 cut(s)	610
BstDEI	CTNAG	2 cut(s)	768, 798
BstENI	CCTNNNNNAGG	1 cut(s)	586
BstF5I	GGATG	2 cut(s)	247, 711
BstHHI	GCGC	2 cut(s)	405, 749
BstKTI	GATC	1 cut(s)	735
BstMBI	GATC	1 cut(s)	732
BstMCI	CGRYCG	1 cut(s)	58
BstMWI	GCNNNNNNNGC	1 cut(s)	172
BstNSI	RCATGY	1 cut(s)	166
BstSFI	CTRYAG	1 cut(s)	780
BstV1I	GCAGC	2 cut(s)	178, 346
BstV2I	GAAGAC	2 cut(s)	557, 612
BsuRI	GGCC	1 cut(s)	774
BtsCI	GGATG	2 cut(s)	247, 711
BtsI	GCAGTG	1 cut(s)	576
BtsIMutI	CAGTG	1 cut(s)	576
Cac8I	GCNNGC	1 cut(s)	610
CfoI	GCGC	2 cut(s)	405, 749
Cfr13I	GGNCC	1 cut(s)	772
Csp6I	GTAC	2 cut(s)	651, 690
CspCI	CAANNNNNGTGG	2 cut(s)	256, 291
CviAII	CATG	2 cut(s)	45, 163
CviQI	GTAC	2 cut(s)	651, 690
DdeI	CTNAG	2 cut(s)	768, 798
DpnI	GATC	1 cut(s)	734
DpnII	GATC	1 cut(s)	732
DraI	TTTAAA	1 cut(s)	37
Eam1104I	CTCTTC	1 cut(s)	473
EarI	CTCTTC	1 cut(s)	473
Eco130I	CCWWGG	1 cut(s)	313
Eco57I	CTGAAG	2 cut(s)	292, 624
Eco88I	CYCGRG	1 cut(s)	502
EcoNI	CCTNNNNNAGG	1 cut(s)	586
EcoO109I	RGGNCCY	1 cut(s)	772
EcoT14I	CCWWGG	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	313
FaeI	CATG	2 cut(s)	48, 166
FaiI	YATR	2 cut(s)	46, 164
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	2 cut(s)	44, 162
FauI	CCCGC	1 cut(s)	7
FblI	GTMKAC	1 cut(s)	233
Fnu4HI	GCNGC	2 cut(s)	167, 335
FokI	GGATG	2 cut(s)	254, 718
Fsp4HI	GCNGC	2 cut(s)	167, 335
FspBI	CTAG	1 cut(s)	648
FspI	TGCGCA	1 cut(s)	748
GlaI	GCGC	2 cut(s)	404, 748
GluI	GCNGC	2 cut(s)	167, 335
GsuI	CTGGAG	1 cut(s)	645
HaeIII	GGCC	1 cut(s)	774
HapII	CCGG	1 cut(s)	183
HhaI	GCGC	2 cut(s)	405, 749
Hin1II	CATG	2 cut(s)	48, 166
Hin6I	GCGC	2 cut(s)	403, 747
HinP1I	GCGC	2 cut(s)	403, 747
HincII	GTYRAC	1 cut(s)	83
HindII	GTYRAC	1 cut(s)	83
HindIII	AAGCTT	2 cut(s)	173, 606
HinfI	GANTC	4 cut(s)	128, 394, 448, 455
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	3 cut(s)	83, 234, 542
Hpy188I	TCNGA	1 cut(s)	226
Hpy188III	TCNNGA	5 cut(s)	391, 445, 452, 624, 698
Hpy8I	GTNNAC	3 cut(s)	83, 234, 542
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	1 cut(s)	221
HpyCH4III	ACNGT	4 cut(s)	56, 80, 202, 689
HpyCH4V	TGCA	6 cut(s)	166, 566, 612, 639, 718, 789
HpyF10VI	GCNNNNNNNGC	1 cut(s)	172
HpyF3I	CTNAG	2 cut(s)	768, 798
Hsp92II	CATG	2 cut(s)	48, 166
HspAI	GCGC	2 cut(s)	403, 747
Kzo9I	GATC	1 cut(s)	732
LguI	GCTCTTC	1 cut(s)	473
LmnI	GCTCC	1 cut(s)	626
Lsp1109I	GCAGC	2 cut(s)	178, 346
LweI	GCATC	1 cut(s)	638
MaeI	CTAG	1 cut(s)	648
MaeIII	GTNAC	2 cut(s)	17, 202
MalI	GATC	1 cut(s)	734
MboI	GATC	1 cut(s)	732
MboII	GAAGA	6 cut(s)	284, 298, 490, 562, 612, 624
MluCI	AATT	4 cut(s)	39, 338, 592, 739
MlyI	GAGTC	1 cut(s)	464
MnlI	CCTC	5 cut(s)	121, 356, 530, 592, 785
MseI	TTAA	1 cut(s)	36
MspI	CCGG	1 cut(s)	183
Mva1269I	GAATGC	1 cut(s)	791
MwoI	GCNNNNNNNGC	1 cut(s)	172
NdeII	GATC	1 cut(s)	732
NlaIII	CATG	2 cut(s)	48, 166
NmuCI	GTSAC	1 cut(s)	202
NsbI	TGCGCA	1 cut(s)	748
NspI	RCATGY	1 cut(s)	166
PaeR7I	CTCGAG	1 cut(s)	502
PciSI	GCTCTTC	1 cut(s)	473
PctI	GAATGC	1 cut(s)	791
PfeI	GAWTC	3 cut(s)	128, 394, 448
PflMI	CCANNNNNTGG	1 cut(s)	390
PkrI	GCNGC	2 cut(s)	168, 336
PleI	GAGTC	1 cut(s)	463
PpsI	GAGTC	1 cut(s)	463
PspPI	GGNCC	1 cut(s)	772
PspXI	VCTCGAGB	1 cut(s)	502
RsaI	GTAC	2 cut(s)	652, 691
RsaNI	GTAC	2 cut(s)	651, 690
SapI	GCTCTTC	1 cut(s)	473
SaqAI	TTAA	1 cut(s)	36
SatI	GCNGC	2 cut(s)	167, 335
Sau3AI	GATC	1 cut(s)	732
Sau96I	GGNCC	1 cut(s)	772
ScaI	AGTACT	1 cut(s)	652
SchI	GAGTC	1 cut(s)	464
SetI	ASST	9 cut(s)	171, 177, 348, 380, 466, 541, 610, 684, 732
SfaNI	GCATC	1 cut(s)	638
SfcI	CTRYAG	1 cut(s)	780
Sfr274I	CTCGAG	1 cut(s)	502
SlaI	CTCGAG	1 cut(s)	502
SmlI	CTYRAG	3 cut(s)	170, 271, 502
SmoI	CTYRAG	3 cut(s)	170, 271, 502
SpeI	ACTAGT	1 cut(s)	647
Sse9I	AATT	4 cut(s)	39, 338, 592, 739
SsiI	CCGC	2 cut(s)	14, 760
SspMI	CTAG	1 cut(s)	648
StyI	CCWWGG	1 cut(s)	313
TaaI	ACNGT	4 cut(s)	56, 80, 202, 689
TaqI	TCGA	6 cut(s)	58, 102, 255, 354, 458, 503
TasI	AATT	4 cut(s)	39, 338, 592, 739
TatI	WGTACW	2 cut(s)	650, 689
TfiI	GAWTC	3 cut(s)	128, 394, 448
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TscAI	CASTG	1 cut(s)	583
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	2 cut(s)	166, 334
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	1 cut(s)	722
TspRI	CASTG	1 cut(s)	583
Van91I	CCANNNNNTGG	1 cut(s)	390
XagI	CCTNNNNNAGG	1 cut(s)	586
XapI	RAATTY	1 cut(s)	592
XceI	RCATGY	1 cut(s)	166
XhoI	CTCGAG	1 cut(s)	502
XmiI	GTMKAC	1 cut(s)	233
XspI	CTAG	1 cut(s)	648
ZrmI	AGTACT	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.