Rh4BG178900

Xyloglucan galactosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000894
Physical Location & Seq
Reverse (-)
31668311 .. 31668949
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG178900.1

Sequence Viewer

Length: 639 bp
ATGAGAAAACAAGAAAGGCCTTACTTGTTTGCTTTTGTTGGGGGACCGAGGCCTGAGCTAGAAACTTCAATTCGGGGTAAACTTATTGAACACTTGCAAGTTACTAGATTGCAATTCAGGCGGAACAATTGTGCTCAACCTGTTACAATTATGAGGGTGTTTCAAAGATCAGTCTATTGCTTGCAGCCTACAGGGGATTCATACACTAGGAAATCCGCTTTTGACTCTTTCCTAGCTAGTTGTATCCCCGTTTTCTTTCATCCAGGTAGCGCTTATACCCAATACTTATGGCATCTACCAAAGAATCACACCAAGTATTCGGTGTTTATTCCGGTTAAGGAAGCAACAGATTTGAATGAAGTCAGCATTGAGAAAACCTTGCTCGGAATCTCAAAGGCTAAGGAACTAGCGATGAGAGAGGAGGTTATACGGCTTATACGTACCAAACCTGGTGTATTCAGATCCCATGTCAACATTAGAGACCCCGGATGCATTTTCAAAAGAATTCTCGAGAGGATTGAAAATGTTAGGAAGGTGAGTAGAGAAGGGAAGGATCCTAGTATTGGATTTACAGAGGAGGAGGGTAACAAGTACAAATTCAATGTGTCAAGACTCAAGAGAAAAAAATTGATTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

212

Amino Acids

24.72

Weight (kDa)

9.98

Isoelectric Point (pI)

51.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 1 - 120 1.1e-27 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 121, 216
AclWI GGATC 3 cut(s) 456, 548, 561
AcsI RAATTY 2 cut(s) 504, 596
AfaI GTAC 2 cut(s) 442, 593
AfeI AGCGCT 1 cut(s) 271
AfiI CCNNNNNNNGG 1 cut(s) 563
AgsI TTSAA 8 cut(s) 69, 89, 164, 355, 499, 521, 601, 635
AjnI CCWGG 2 cut(s) 262, 448
AluBI AGCT 2 cut(s) 58, 236
AluI AGCT 2 cut(s) 58, 236
Alw21I GWGCWC 1 cut(s) 136
Alw26I GTCTC 1 cut(s) 474
AlwI GGATC 3 cut(s) 456, 548, 561
Ama87I CYCGRG 1 cut(s) 509
Aor51HI AGCGCT 1 cut(s) 271
AoxI GGCC 2 cut(s) 17, 50
ApeKI GCWGC 1 cut(s) 184
ApoI RAATTY 2 cut(s) 504, 596
AspLEI GCGC 1 cut(s) 272
AspS9I GGNCC 1 cut(s) 44
AsuC2I CCSGG 1 cut(s) 486
AsuHPI GGTGA 1 cut(s) 547
AvaI CYCGRG 1 cut(s) 509
AvaII GGWCC 1 cut(s) 44
BamHI GGATCC 1 cut(s) 553
Bbv12I GWGCWC 1 cut(s) 136
BbvI GCAGC 1 cut(s) 196
BceAI ACGGC 1 cut(s) 446
BciT130I CCWGG 2 cut(s) 264, 450
BciVI GTATCC 1 cut(s) 254
BcnI CCSGG 1 cut(s) 486
BcoDI GTCTC 1 cut(s) 474
BfaI CTAG 7 cut(s) 59, 105, 207, 233, 237, 407, 558
BfmI CTRYAG 1 cut(s) 189
BfoI RGCGCY 1 cut(s) 273
BfuI GTATCC 1 cut(s) 254
BisI GCNGC 1 cut(s) 185
BlsI GCNGC 1 cut(s) 186
Bme1390I CCNGG 3 cut(s) 264, 450, 486
Bme18I GGWCC 1 cut(s) 44
BmeT110I CYCGRG 1 cut(s) 509
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 2 cut(s) 45, 555
BmrFI CCNGG 3 cut(s) 264, 450, 486
BmsI GCATC 2 cut(s) 301, 479
Bpu10I CCTNAGC 2 cut(s) 54, 399
BpuEI CTTGAG 1 cut(s) 599
BpuMI CCSGG 1 cut(s) 486
BsaAI YACGTR 1 cut(s) 440
BsaI GGTCTC 1 cut(s) 474
BsaJI CCNNGG 2 cut(s) 47, 484
BsaWI WCCGGW 1 cut(s) 331
Bsc4I CCNNNNNNNGG 1 cut(s) 563
BseBI CCWGG 2 cut(s) 264, 450
BseDI CCNNGG 2 cut(s) 47, 484
BseGI GGATG 2 cut(s) 259, 494
BseLI CCNNNNNNNGG 1 cut(s) 563
BseMII CTCAG 1 cut(s) 45
BseRI GAGGAG 3 cut(s) 434, 590, 593
BseXI GCAGC 1 cut(s) 196
BshFI GGCC 2 cut(s) 19, 52
BsiHKAI GWGCWC 1 cut(s) 136
BsiHKCI CYCGRG 1 cut(s) 509
BsiSI CCGG 2 cut(s) 332, 486
BslFI GGGAC 1 cut(s) 57
BslI CCNNNNNNNGG 1 cut(s) 563
BsmAI GTCTC 1 cut(s) 474
BsmFI GGGAC 1 cut(s) 57
BsnI GGCC 2 cut(s) 19, 52
Bso31I GGTCTC 1 cut(s) 474
BsoBI CYCGRG 1 cut(s) 509
Bsp1286I GDGCHC 1 cut(s) 136
Bsp143I GATC 3 cut(s) 167, 461, 553
BspACI CCGC 2 cut(s) 121, 216
BspANI GGCC 2 cut(s) 19, 52
BspCNI CTCAG 1 cut(s) 46
BspLI GGNNCC 2 cut(s) 45, 555
BspPI GGATC 3 cut(s) 456, 548, 561
BspTNI GGTCTC 1 cut(s) 474
BssECI CCNNGG 2 cut(s) 47, 484
BssMI GATC 3 cut(s) 167, 461, 553
Bst2UI CCWGG 2 cut(s) 264, 450
BstBAI YACGTR 1 cut(s) 440
BstC8I GCNNGC 1 cut(s) 182
BstDEI CTNAG 2 cut(s) 54, 399
BstF5I GGATG 2 cut(s) 259, 494
BstH2I RGCGCY 1 cut(s) 273
BstHHI GCGC 1 cut(s) 272
BstKTI GATC 3 cut(s) 170, 464, 556
BstMAI GTCTC 1 cut(s) 474
BstMBI GATC 3 cut(s) 167, 461, 553
BstMWI GCNNNNNNNGC 1 cut(s) 118
BstNI CCWGG 2 cut(s) 264, 450
BstSCI CCNGG 3 cut(s) 262, 448, 484
BstSFI CTRYAG 1 cut(s) 189
BstSNI TACGTA 1 cut(s) 440
BstV1I GCAGC 1 cut(s) 196
BstX2I RGATCY 2 cut(s) 461, 553
BstYI RGATCY 2 cut(s) 461, 553
BsuI GTATCC 1 cut(s) 254
BsuRI GGCC 2 cut(s) 19, 52
BtgZI GCGATG 1 cut(s) 425
BtsCI GGATG 2 cut(s) 259, 494
Cac8I GCNNGC 1 cut(s) 182
CfoI GCGC 1 cut(s) 272
Cfr13I GGNCC 1 cut(s) 44
CsiI ACCWGGT 1 cut(s) 448
Csp6I GTAC 2 cut(s) 441, 592
CviAII CATG 1 cut(s) 467
CviJI RGCY 7 cut(s) 19, 52, 58, 187, 236, 398, 433
CviKI_1 RGCY 7 cut(s) 19, 52, 58, 187, 236, 398, 433
CviQI GTAC 2 cut(s) 441, 592
DdeI CTNAG 2 cut(s) 54, 399
DpnI GATC 3 cut(s) 169, 463, 555
DpnII GATC 3 cut(s) 167, 461, 553
EciI GGCGGA 1 cut(s) 136
Eco105I TACGTA 1 cut(s) 440
Eco147I AGGCCT 2 cut(s) 19, 52
Eco31I GGTCTC 1 cut(s) 474
Eco47I GGWCC 1 cut(s) 44
Eco47III AGCGCT 1 cut(s) 271
Eco88I CYCGRG 1 cut(s) 509
EcoRI GAATTC 1 cut(s) 504
EcoRII CCWGG 2 cut(s) 262, 448
EcoT22I ATGCAT 1 cut(s) 494
FaeI CATG 1 cut(s) 470
FaiI YATR 7 cut(s) 152, 202, 276, 289, 428, 437, 468
FaqI GGGAC 1 cut(s) 57
FatI CATG 1 cut(s) 466
Fnu4HI GCNGC 1 cut(s) 185
FokI GGATG 2 cut(s) 246, 501
Fsp4HI GCNGC 1 cut(s) 185
FspBI CTAG 7 cut(s) 59, 105, 207, 233, 237, 407, 558
GlaI GCGC 1 cut(s) 271
GluI GCNGC 1 cut(s) 185
HaeII RGCGCY 1 cut(s) 273
HaeIII GGCC 2 cut(s) 19, 52
HapII CCGG 2 cut(s) 332, 486
HhaI GCGC 1 cut(s) 272
Hin1II CATG 1 cut(s) 470
Hin6I GCGC 1 cut(s) 270
HinP1I GCGC 1 cut(s) 270
HincII GTYRAC 1 cut(s) 472
HindII GTYRAC 1 cut(s) 472
HinfI GANTC 5 cut(s) 197, 224, 304, 387, 612
HpaII CCGG 2 cut(s) 332, 486
HphI GGTGA 1 cut(s) 547
Hpy166II GTNNAC 2 cut(s) 80, 472
Hpy188I TCNGA 2 cut(s) 386, 461
Hpy188III TCNNGA 4 cut(s) 509, 511, 609, 616
Hpy8I GTNNAC 2 cut(s) 80, 472
HpyAV CCTTC 3 cut(s) 526, 539, 544
HpyCH4IV ACGT 1 cut(s) 439
HpyCH4V TGCA 4 cut(s) 97, 112, 184, 492
HpyF10VI GCNNNNNNNGC 1 cut(s) 118
HpyF3I CTNAG 2 cut(s) 54, 399
HpySE526I ACGT 1 cut(s) 439
Hsp92II CATG 1 cut(s) 470
HspAI GCGC 1 cut(s) 270
Kzo9I GATC 3 cut(s) 167, 461, 553
Lsp1109I GCAGC 1 cut(s) 196
LweI GCATC 2 cut(s) 301, 479
MabI ACCWGGT 1 cut(s) 448
MaeI CTAG 7 cut(s) 59, 105, 207, 233, 237, 407, 558
MaeII ACGT 1 cut(s) 439
MaeIII GTNAC 3 cut(s) 100, 142, 584
MalI GATC 3 cut(s) 169, 463, 555
MboI GATC 3 cut(s) 167, 461, 553
MfeI CAATTG 1 cut(s) 127
MflI RGATCY 2 cut(s) 461, 553
MhlI GDGCHC 1 cut(s) 136
MluCI AATT 7 cut(s) 69, 113, 127, 147, 504, 596, 626
MlyI GAGTC 2 cut(s) 218, 606
MnlI CCTC 8 cut(s) 42, 147, 412, 415, 507, 568, 571, 574
Mph1103I ATGCAT 1 cut(s) 494
MseI TTAA 1 cut(s) 336
MspI CCGG 2 cut(s) 332, 486
MspR9I CCNGG 3 cut(s) 264, 450, 486
MunI CAATTG 1 cut(s) 127
MvaI CCWGG 2 cut(s) 264, 450
MwoI GCNNNNNNNGC 1 cut(s) 118
NciI CCSGG 1 cut(s) 486
NdeII GATC 3 cut(s) 167, 461, 553
NlaIII CATG 1 cut(s) 470
NlaIV GGNNCC 2 cut(s) 45, 555
NsiI ATGCAT 1 cut(s) 494
PaeR7I CTCGAG 1 cut(s) 509
PceI AGGCCT 2 cut(s) 19, 52
PcsI WCGNNNNNNNCGW 1 cut(s) 436
PfeI GAWTC 3 cut(s) 197, 304, 387
PkrI GCNGC 1 cut(s) 186
PleI GAGTC 2 cut(s) 218, 606
PpsI GAGTC 2 cut(s) 218, 606
Ppu21I YACGTR 1 cut(s) 440
Psp6I CCWGG 2 cut(s) 262, 448
PspGI CCWGG 2 cut(s) 262, 448
PspN4I GGNNCC 2 cut(s) 45, 555
PspPI GGNCC 1 cut(s) 44
PsuI RGATCY 2 cut(s) 461, 553
RsaI GTAC 2 cut(s) 442, 593
RsaNI GTAC 2 cut(s) 441, 592
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 1 cut(s) 185
Sau3AI GATC 3 cut(s) 167, 461, 553
Sau96I GGNCC 1 cut(s) 44
SchI GAGTC 2 cut(s) 218, 606
ScrFI CCNGG 3 cut(s) 264, 450, 486
SduI GDGCHC 1 cut(s) 136
SetI ASST 9 cut(s) 60, 142, 238, 268, 380, 426, 442, 451, 537
SexAI ACCWGGT 1 cut(s) 448
SfaNI GCATC 2 cut(s) 301, 479
SfcI CTRYAG 1 cut(s) 189
Sfr274I CTCGAG 1 cut(s) 509
SinI GGWCC 1 cut(s) 44
SlaI CTCGAG 1 cut(s) 509
SmlI CTYRAG 2 cut(s) 509, 614
SmoI CTYRAG 2 cut(s) 509, 614
SnaBI TACGTA 1 cut(s) 440
Sse9I AATT 7 cut(s) 69, 113, 127, 147, 504, 596, 626
SseBI AGGCCT 2 cut(s) 19, 52
SsiI CCGC 2 cut(s) 121, 216
SspMI CTAG 7 cut(s) 59, 105, 207, 233, 237, 407, 558
StuI AGGCCT 2 cut(s) 19, 52
StyD4I CCNGG 3 cut(s) 262, 448, 484
TaiI ACGT 1 cut(s) 442
TaqI TCGA 1 cut(s) 510
TaqII GACCGA 1 cut(s) 61
TasI AATT 7 cut(s) 69, 113, 127, 147, 504, 596, 626
TatI WGTACW 1 cut(s) 591
TfiI GAWTC 3 cut(s) 197, 304, 387
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TseI GCWGC 1 cut(s) 184
TspDTI ATGAA 3 cut(s) 189, 248, 372
VpaK11BI GGWCC 1 cut(s) 44
XapI RAATTY 2 cut(s) 504, 596
XhoI CTCGAG 1 cut(s) 509
XspI CTAG 7 cut(s) 59, 105, 207, 233, 237, 407, 558
Zsp2I ATGCAT 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.