Rh1AG117000

Xyloglucan galactosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000894
Physical Location & Seq
Reverse (-)
20086024 .. 20104383
18360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG117000.1

Sequence Viewer

Length: 501 bp
ATGTTCAAGTCCTTCTGGTTTGAGAGAGCTGCTCATCCAGACCAAATGGAGAAACTACTTACCGGAAAGTGTTCTCGAGAAGTCTTGTTTGGCATACTTTCTCCATCTTTGGGATACAGAGACTCTTCGAGTAAAGATCTAGTCAAGTGGCTTTCAGGGAAACCTGAATGGAAGACAATGTGGGGCAAAGACCATTTCATGGTGACTGGCAGGACTTCTTGGGATTTCAGGAGGACTAACGACAATGCGGAATGGCCATGGGGCAGTGGTCTTAGGTTCTTGCCACAGTCAAAGAACATGAGTATGCTTTCGGTAGAAGGAAGCTTGTGGAAAAATGACTTTGCTATTCCATACCCCACGAACTTTCATCCAGCAAAGGATAGTGAGATTATCCAGTGGCAGAACAGAATGAGATATCTAGAGAGGCCTTACTTGTTTTCTTTTATTGGAGCGCCAAGGCCTGGCATGGAGAAATCTATCAGGGGGGAACTTATTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

166

Amino Acids

19.51

Weight (kDa)

9.41

Isoelectric Point (pI)

24.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 41 - 166 4.2e-24 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 199, 461
AciI CCGC 1 cut(s) 248
AcoI YGGCCR 1 cut(s) 254
AfiI CCNNNNNNNGG 3 cut(s) 110, 199, 461
AgsI TTSAA 1 cut(s) 7
AjnI CCWGG 1 cut(s) 460
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
AluBI AGCT 2 cut(s) 29, 324
AluI AGCT 2 cut(s) 29, 324
Alw26I GTCTC 1 cut(s) 114
Ama87I CYCGRG 1 cut(s) 75
AoxI GGCC 3 cut(s) 254, 425, 458
ApeKI GCWGC 1 cut(s) 29
Asp700I GAANNNNTTC 1 cut(s) 70
AspLEI GCGC 1 cut(s) 454
AsuHPI GGTGA 1 cut(s) 214
AvaI CYCGRG 1 cut(s) 75
BalI TGGCCA 1 cut(s) 256
BbsI GAAGAC 1 cut(s) 179
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 112
BciT130I CCWGG 1 cut(s) 462
BciVI GTATCC 1 cut(s) 107
BcoDI GTCTC 1 cut(s) 114
BfaI CTAG 2 cut(s) 140, 419
BfoI RGCGCY 1 cut(s) 455
BfuI GTATCC 1 cut(s) 107
BglII AGATCT 1 cut(s) 136
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
Bme1390I CCNGG 1 cut(s) 462
BmeT110I CYCGRG 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 462
BpiI GAAGAC 1 cut(s) 179
BplI GAGNNNNNCTC 2 cut(s) 16, 48
BsaJI CCNNGG 2 cut(s) 257, 455
BsaWI WCCGGW 1 cut(s) 62
Bsc4I CCNNNNNNNGG 3 cut(s) 110, 199, 461
Bse1I ACTGG 2 cut(s) 211, 394
BseBI CCWGG 1 cut(s) 462
BseDI CCNNGG 2 cut(s) 257, 455
BseGI GGATG 2 cut(s) 34, 367
BseLI CCNNNNNNNGG 3 cut(s) 110, 199, 461
BseNI ACTGG 2 cut(s) 211, 394
BseXI GCAGC 1 cut(s) 16
BshFI GGCC 3 cut(s) 256, 427, 460
BsiHKCI CYCGRG 1 cut(s) 75
BsiSI CCGG 1 cut(s) 63
BslI CCNNNNNNNGG 3 cut(s) 110, 199, 461
BsmAI GTCTC 1 cut(s) 114
BsnI GGCC 3 cut(s) 256, 427, 460
BsoBI CYCGRG 1 cut(s) 75
Bsp143I GATC 1 cut(s) 136
Bsp19I CCATGG 1 cut(s) 257
BspACI CCGC 1 cut(s) 248
BspANI GGCC 3 cut(s) 256, 427, 460
BsrI ACTGG 2 cut(s) 211, 394
BssECI CCNNGG 2 cut(s) 257, 455
BssMI GATC 1 cut(s) 136
BssT1I CCWWGG 2 cut(s) 257, 455
Bst2UI CCWGG 1 cut(s) 462
Bst4CI ACNGT 1 cut(s) 288
Bst6I CTCTTC 1 cut(s) 130
BstDEI CTNAG 1 cut(s) 272
BstDSI CCRYGG 1 cut(s) 257
BstF5I GGATG 2 cut(s) 34, 367
BstH2I RGCGCY 1 cut(s) 455
BstHHI GCGC 1 cut(s) 454
BstKTI GATC 1 cut(s) 139
BstMAI GTCTC 1 cut(s) 114
BstMBI GATC 1 cut(s) 136
BstNI CCWGG 1 cut(s) 462
BstSCI CCNGG 1 cut(s) 460
BstV1I GCAGC 1 cut(s) 16
BstV2I GAAGAC 1 cut(s) 179
BstX2I RGATCY 1 cut(s) 136
BstYI RGATCY 1 cut(s) 136
BsuI GTATCC 1 cut(s) 107
BsuRI GGCC 3 cut(s) 256, 427, 460
BtgI CCRYGG 1 cut(s) 257
BtsCI GGATG 2 cut(s) 34, 367
BtsI GCAGTG 1 cut(s) 271
BtsIMutI CAGTG 2 cut(s) 271, 401
CfoI GCGC 1 cut(s) 454
CviAII CATG 4 cut(s) 199, 258, 298, 466
CviJI RGCY 6 cut(s) 29, 151, 256, 324, 427, 460
CviKI_1 RGCY 6 cut(s) 29, 151, 256, 324, 427, 460
DdeI CTNAG 1 cut(s) 272
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
EaeI YGGCCR 1 cut(s) 254
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
Eco130I CCWWGG 2 cut(s) 257, 455
Eco147I AGGCCT 2 cut(s) 427, 460
Eco32I GATATC 1 cut(s) 416
Eco88I CYCGRG 1 cut(s) 75
EcoRII CCWGG 1 cut(s) 460
EcoRV GATATC 1 cut(s) 416
EcoT14I CCWWGG 2 cut(s) 257, 455
ErhI CCWWGG 2 cut(s) 257, 455
FaeI CATG 4 cut(s) 202, 261, 301, 469
FaiI YATR 7 cut(s) 95, 200, 259, 299, 305, 352, 467
FatI CATG 4 cut(s) 198, 257, 297, 465
Fnu4HI GCNGC 1 cut(s) 30
FokI GGATG 2 cut(s) 21, 354
Fsp4HI GCNGC 1 cut(s) 30
FspBI CTAG 2 cut(s) 140, 419
GlaI GCGC 1 cut(s) 453
GluI GCNGC 1 cut(s) 30
HaeII RGCGCY 1 cut(s) 455
HaeIII GGCC 3 cut(s) 256, 427, 460
HapII CCGG 1 cut(s) 63
HhaI GCGC 1 cut(s) 454
Hin1II CATG 4 cut(s) 202, 261, 301, 469
Hin6I GCGC 1 cut(s) 452
HinP1I GCGC 1 cut(s) 452
HindIII AAGCTT 1 cut(s) 322
HinfI GANTC 1 cut(s) 122
HpaII CCGG 1 cut(s) 63
HphI GGTGA 1 cut(s) 214
Hpy188III TCNNGA 5 cut(s) 38, 75, 77, 229, 419
HpyAV CCTTC 2 cut(s) 22, 311
HpyCH4III ACNGT 1 cut(s) 288
HpyF3I CTNAG 1 cut(s) 272
Hsp92II CATG 4 cut(s) 202, 261, 301, 469
HspAI GCGC 1 cut(s) 452
Kzo9I GATC 1 cut(s) 136
LmnI GCTCC 1 cut(s) 449
Lsp1109I GCAGC 1 cut(s) 16
MaeI CTAG 2 cut(s) 140, 419
MaeIII GTNAC 1 cut(s) 202
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 2 cut(s) 117, 184
MflI RGATCY 1 cut(s) 136
MlsI TGGCCA 1 cut(s) 256
MluNI TGGCCA 1 cut(s) 256
MlyI GAGTC 1 cut(s) 116
MnlI CCTC 2 cut(s) 225, 417
Mox20I TGGCCA 1 cut(s) 256
MroXI GAANNNNTTC 1 cut(s) 70
MscI TGGCCA 1 cut(s) 256
MslI CAYNNNNRTG 1 cut(s) 302
Msp20I TGGCCA 1 cut(s) 256
MspI CCGG 1 cut(s) 63
MspR9I CCNGG 1 cut(s) 462
MvaI CCWGG 1 cut(s) 462
NcoI CCATGG 1 cut(s) 257
NdeII GATC 1 cut(s) 136
NlaIII CATG 4 cut(s) 202, 261, 301, 469
NmuCI GTSAC 1 cut(s) 202
PaeR7I CTCGAG 1 cut(s) 75
PceI AGGCCT 2 cut(s) 427, 460
PdmI GAANNNNTTC 1 cut(s) 70
PflMI CCANNNNNTGG 2 cut(s) 199, 461
PkrI GCNGC 1 cut(s) 31
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 460
PspGI CCWGG 1 cut(s) 460
PsuI RGATCY 1 cut(s) 136
RseI CAYNNNNRTG 1 cut(s) 302
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 1 cut(s) 136
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 1 cut(s) 462
SetI ASST 4 cut(s) 31, 166, 278, 326
Sfr274I CTCGAG 1 cut(s) 75
SlaI CTCGAG 1 cut(s) 75
SmiMI CAYNNNNRTG 1 cut(s) 302
SmlI CTYRAG 1 cut(s) 75
SmoI CTYRAG 1 cut(s) 75
SseBI AGGCCT 2 cut(s) 427, 460
SsiI CCGC 1 cut(s) 248
SspMI CTAG 2 cut(s) 140, 419
StuI AGGCCT 2 cut(s) 427, 460
StyD4I CCNGG 1 cut(s) 460
StyI CCWWGG 2 cut(s) 257, 455
TaaI ACNGT 1 cut(s) 288
TaqI TCGA 2 cut(s) 76, 128
TscAI CASTG 2 cut(s) 271, 401
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 2 cut(s) 187, 356
TspRI CASTG 2 cut(s) 271, 401
Van91I CCANNNNNTGG 2 cut(s) 199, 461
XbaI TCTAGA 1 cut(s) 418
XhoI CTCGAG 1 cut(s) 75
XmnI GAANNNNTTC 1 cut(s) 70
XspI CTAG 2 cut(s) 140, 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.