RchiOBHm_Chr4g0413411

Xyloglucan galactosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000894
Physical Location & Seq
Reverse (-)
37628895 .. 37630379
1485 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38394

Sequence Viewer

Length: 1485 bp
ATGGGGAAACCACTTGCTGGAAAGTGCTCTCCAGAAGTTTGGTTAGGCATTCTCTTCTCTTTTATTTTGTGCTTTTTTCTGCTTCCCTTTGATTACCCAAGTAATTTTTTGGGGGTAAATAATGGTGTTAGTCTCTTTGAAAACAAAGAAACACACCCAATTGGTATTGTAAAGAATCAGTCGATTTCTGTTATCAACCAATCTACCACAGATTCATGCTCTGGTCGTTACATTTATATCCATGATGATCTTCCTACCAAATTTAACTATGATCTGATCAACAACTGTGAGTCTCTTACTGGAAGTAACATGCCCAATATGTGTCCACACATAAAGAATTTCGGTTTTGGTCAGGAAATTAACAACTCTGAAGGGGTTTTAACCAACAAGAGATGGTTCTCCACTAACCAGTTCTCATTAGAACTCATATTTCACAGCAAGATGAAGCACTATGAGTGCTTGACAAACAACTCCGCTCAGGCTTCAGCTATTTATATACCAATCTATCCTGGCCTTGAGGAGAGTCAACATCTGTGGGATCCAAACCTCACAGCCAGAGACTCTTTCGGTGAAGAGTTTTCCAAGTGGGTTTCGAGTAGATTCGAATGGAAGAAAATGTGGGGGAGAGACCATTTCTTTGTTTCAGGGAGGGTTGCTTTCGACTATAGGAGGAAAACAGACAACATTTCTGACTGGGGTAGTACACTCAGGGTCTCGCCAGAGTCTAACAACATGACTATGTTAACAATTGAAGGAAGCTCACGGACAAATGATATTGCTATACCATACCCCACTGGCTTTCATCCTGCAAAGGACAGTGAAGTGTTTCAGTGGCAGAACAGAGTGAGGGGGCAAGAAAGGCCTTACTTGTTCACTTTTGTTGGTGGACCAAGGCCTGACCAGCCAAACTCTATCCGGGGCAAACTTTTTGATCAGTGTCAAGCCTCAAGTACTTGCAAGGTACTAAATTGCCATTCAAGTGGGATCAATTGTGAAGAAACGGTTACTGTTATGAGGGTGTTTCAGAAATCAGTTTATTGCTTGCACCCTACAGGGGATACATTCACCAGAAAATCAGCTTTTGACTCTATTCTGGCTGGTTGCATTCCTGTTTTCTTTCATCCGGCTAGCGCTTATAACCAGTATTTATGGTACTTGCCTAAGAATTACACCAAGTATTCTGTATTTATTCCAGTGAGGAAAGCACAAAATTTGAAAGACGGTAGCATTGAGAAAATCTTACTTGAAATTTCAAAGGACATGGAATTCGCCATGAGAGAGCAAGTGATAAGCCTAATTCCAAAGTTGGTGTACGGAGATCCCAGGTCAAGATTAGAGACCAAAGATGCATTTGATATTGCTGTCAACAAAATACTTGAGAGGATAGAAAATGTAAGGAAGGTGGTCAGAGAGGGGAGGGATCCTAGTATCGGATTTGCCGAGCCGGATGGTAATAAGTTCCTATTTCCTGAGGAGCTAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

494

Amino Acids

56.52

Weight (kDa)

6.84

Isoelectric Point (pI)

43.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 72 - 406 5.5e-76 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1137
AccB7I CCANNNNNTGG 1 cut(s) 17
AccBSI CCGCTC 1 cut(s) 476
AciI CCGC 1 cut(s) 474
AclWI GGATC 6 cut(s) 533, 546, 992, 1313, 1415, 1428
AcsI RAATTY 5 cut(s) 260, 337, 1210, 1248, 1265
AcuI CTGAAG 2 cut(s) 390, 468
AfaI GTAC 5 cut(s) 703, 952, 963, 1154, 1313
AfeI AGCGCT 1 cut(s) 1132
AfiI CCNNNNNNNGG 3 cut(s) 17, 1054, 1430
AgsI TTSAA 6 cut(s) 140, 752, 978, 1216, 1247, 1254
AjnI CCWGG 2 cut(s) 508, 1322
AluBI AGCT 4 cut(s) 488, 759, 1079, 1477
AluI AGCT 4 cut(s) 488, 759, 1079, 1477
Alw21I GWGCWC 1 cut(s) 29
Alw26I GTCTC 6 cut(s) 137, 297, 552, 621, 718, 1331
AlwI GGATC 6 cut(s) 533, 546, 992, 1313, 1415, 1428
Aor51HI AGCGCT 1 cut(s) 1132
AoxI GGCC 3 cut(s) 511, 860, 893
ApoI RAATTY 5 cut(s) 260, 337, 1210, 1248, 1265
ArsI GACNNNNNNTTYG 4 cut(s) 620, 652, 1250, 1282
Asp700I GAANNNNTTC 1 cut(s) 825
AspLEI GCGC 1 cut(s) 1133
AspS9I GGNCC 1 cut(s) 887
AsuC2I CCSGG 1 cut(s) 917
AsuHPI GGTGA 2 cut(s) 581, 1057
AsuII TTCGAA 1 cut(s) 603
AsuNHI GCTAGC 1 cut(s) 1127
AvaII GGWCC 1 cut(s) 887
AxyI CCTNAGG 1 cut(s) 1470
BamHI GGATCC 2 cut(s) 538, 1420
Bbv12I GWGCWC 1 cut(s) 29
BccI CCATC 2 cut(s) 387, 1442
BciT130I CCWGG 2 cut(s) 510, 1324
BciVI GTATCC 1 cut(s) 1051
BclI TGATCA 2 cut(s) 276, 931
BcnI CCSGG 1 cut(s) 917
BcoDI GTCTC 6 cut(s) 137, 297, 552, 621, 718, 1331
BfaI CTAG 3 cut(s) 1128, 1425, 1478
BfmI CTRYAG 2 cut(s) 664, 1050
BfoI RGCGCY 1 cut(s) 1134
BfuI GTATCC 1 cut(s) 1051
BmcAI AGTACT 1 cut(s) 952
Bme1390I CCNGG 3 cut(s) 510, 917, 1324
Bme18I GGWCC 1 cut(s) 887
BmgT120I GGNCC 1 cut(s) 887
BmiI GGNNCC 2 cut(s) 540, 1422
BmrFI CCNGG 3 cut(s) 510, 917, 1324
BmrI ACTGGG 1 cut(s) 703
BmsI GCATC 1 cut(s) 1336
BmtI GCTAGC 1 cut(s) 1131
BmuI ACTGGG 1 cut(s) 703
BpmI CTGGAG 1 cut(s) 15
Bpu10I CCTNAGC 1 cut(s) 477
Bpu14I TTCGAA 1 cut(s) 603
BpuEI CTTGAG 3 cut(s) 536, 931, 1397
BpuMI CCSGG 1 cut(s) 917
BsaI GGTCTC 3 cut(s) 621, 718, 1331
BsaJI CCNNGG 3 cut(s) 890, 916, 1322
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 1054, 1430
Bse1I ACTGG 6 cut(s) 304, 409, 698, 799, 1141, 1193
Bse21I CCTNAGG 1 cut(s) 1470
BseBI CCWGG 2 cut(s) 510, 1324
BseDI CCNNGG 3 cut(s) 890, 916, 1322
BseGI GGATG 3 cut(s) 802, 1120, 1453
BseLI CCNNNNNNNGG 3 cut(s) 17, 1054, 1430
BseMII CTCAG 3 cut(s) 491, 721, 1461
BseNI ACTGG 6 cut(s) 304, 409, 698, 799, 1141, 1193
BseRI GAGGAG 1 cut(s) 533
BshFI GGCC 3 cut(s) 513, 862, 895
BsiHKAI GWGCWC 1 cut(s) 29
BsiSI CCGG 3 cut(s) 916, 1124, 1445
BslI CCNNNNNNNGG 3 cut(s) 17, 1054, 1430
BsmAI GTCTC 6 cut(s) 137, 297, 552, 621, 718, 1331
BsmI GAATGC 2 cut(s) 48, 1104
BsnI GGCC 3 cut(s) 513, 862, 895
Bso31I GGTCTC 3 cut(s) 621, 718, 1331
Bsp119I TTCGAA 1 cut(s) 603
Bsp1286I GDGCHC 1 cut(s) 29
Bsp143I GATC 8 cut(s) 247, 271, 276, 538, 931, 984, 1318, 1420
BspACI CCGC 1 cut(s) 474
BspANI GGCC 3 cut(s) 513, 862, 895
BspCNI CTCAG 3 cut(s) 490, 720, 1462
BspLI GGNNCC 2 cut(s) 540, 1422
BspOI GCTAGC 1 cut(s) 1131
BspPI GGATC 6 cut(s) 533, 546, 992, 1313, 1415, 1428
BspT104I TTCGAA 1 cut(s) 603
BspTNI GGTCTC 3 cut(s) 621, 718, 1331
BsrBI CCGCTC 1 cut(s) 476
BsrI ACTGG 6 cut(s) 304, 409, 698, 799, 1141, 1193
BssECI CCNNGG 3 cut(s) 890, 916, 1322
BssMI GATC 8 cut(s) 247, 271, 276, 538, 931, 984, 1318, 1420
BssT1I CCWWGG 1 cut(s) 890
Bst2UI CCWGG 2 cut(s) 510, 1324
Bst4CI ACNGT 5 cut(s) 287, 818, 1003, 1009, 1223
Bst6I CTCTTC 2 cut(s) 59, 567
BstBI TTCGAA 1 cut(s) 603
BstC8I GCNNGC 2 cut(s) 1043, 1129
BstDEI CTNAG 4 cut(s) 477, 707, 1161, 1470
BstF5I GGATG 3 cut(s) 802, 1120, 1453
BstH2I RGCGCY 1 cut(s) 1134
BstHHI GCGC 1 cut(s) 1133
BstKTI GATC 8 cut(s) 250, 274, 279, 541, 934, 987, 1321, 1423
BstMAI GTCTC 6 cut(s) 137, 297, 552, 621, 718, 1331
BstMBI GATC 8 cut(s) 247, 271, 276, 538, 931, 984, 1318, 1420
BstMWI GCNNNNNNNGC 2 cut(s) 859, 901
BstNI CCWGG 2 cut(s) 510, 1324
BstNSI RCATGY 1 cut(s) 313
BstSCI CCNGG 3 cut(s) 508, 915, 1322
BstSFI CTRYAG 2 cut(s) 664, 1050
BstX2I RGATCY 3 cut(s) 538, 1318, 1420
BstXI CCANNNNNNTGG 2 cut(s) 39, 980
BstYI RGATCY 3 cut(s) 538, 1318, 1420
Bsu36I CCTNAGG 1 cut(s) 1470
BsuI GTATCC 1 cut(s) 1051
BsuRI GGCC 3 cut(s) 513, 862, 895
BtsCI GGATG 3 cut(s) 802, 1120, 1453
BtsIMutI CAGTG 5 cut(s) 792, 823, 836, 941, 1200
Cac8I GCNNGC 2 cut(s) 1043, 1129
CfoI GCGC 1 cut(s) 1133
Cfr13I GGNCC 1 cut(s) 887
Csp6I GTAC 5 cut(s) 702, 951, 962, 1153, 1312
CspCI CAANNNNNGTGG 2 cut(s) 515, 550
CviAII CATG 6 cut(s) 216, 242, 310, 733, 1261, 1273
CviQI GTAC 5 cut(s) 702, 951, 962, 1153, 1312
DdeI CTNAG 4 cut(s) 477, 707, 1161, 1470
DpnI GATC 8 cut(s) 249, 273, 278, 540, 933, 986, 1320, 1422
DpnII GATC 8 cut(s) 247, 271, 276, 538, 931, 984, 1318, 1420
Eam1104I CTCTTC 2 cut(s) 59, 567
EarI CTCTTC 2 cut(s) 59, 567
Eco130I CCWWGG 1 cut(s) 890
Eco147I AGGCCT 2 cut(s) 862, 895
Eco31I GGTCTC 3 cut(s) 621, 718, 1331
Eco47I GGWCC 1 cut(s) 887
Eco47III AGCGCT 1 cut(s) 1132
Eco57I CTGAAG 2 cut(s) 390, 468
Eco81I CCTNAGG 1 cut(s) 1470
EcoRI GAATTC 1 cut(s) 1265
EcoRII CCWGG 2 cut(s) 508, 1322
EcoT14I CCWWGG 1 cut(s) 890
EcoT22I ATGCAT 1 cut(s) 1351
ErhI CCWWGG 1 cut(s) 890
FaeI CATG 6 cut(s) 219, 245, 313, 736, 1264, 1276
FatI CATG 6 cut(s) 215, 241, 309, 732, 1260, 1272
FbaI TGATCA 2 cut(s) 276, 931
FokI GGATG 3 cut(s) 789, 1107, 1460
FspBI CTAG 3 cut(s) 1128, 1425, 1478
GlaI GCGC 1 cut(s) 1132
GsuI CTGGAG 1 cut(s) 15
HaeII RGCGCY 1 cut(s) 1134
HaeIII GGCC 3 cut(s) 513, 862, 895
HapII CCGG 3 cut(s) 916, 1124, 1445
HhaI GCGC 1 cut(s) 1133
Hin1II CATG 6 cut(s) 219, 245, 313, 736, 1264, 1276
Hin6I GCGC 1 cut(s) 1131
HinP1I GCGC 1 cut(s) 1131
HincII GTYRAC 3 cut(s) 527, 744, 1366
HindII GTYRAC 3 cut(s) 527, 744, 1366
HinfI GANTC 8 cut(s) 175, 212, 290, 523, 560, 600, 722, 1085
HpaI GTTAAC 1 cut(s) 744
HpaII CCGG 3 cut(s) 916, 1124, 1445
HphI GGTGA 2 cut(s) 581, 1057
Hpy166II GTNNAC 8 cut(s) 326, 527, 704, 744, 873, 887, 1312, 1366
Hpy188I TCNGA 6 cut(s) 276, 370, 691, 1026, 1409, 1433
Hpy188III TCNNGA 4 cut(s) 32, 353, 1329, 1469
Hpy8I GTNNAC 8 cut(s) 326, 527, 704, 744, 873, 887, 1312, 1366
HpyAV CCTTC 3 cut(s) 365, 746, 1393
HpyCH4III ACNGT 5 cut(s) 287, 818, 1003, 1009, 1223
HpyCH4V TGCA 5 cut(s) 809, 957, 1045, 1104, 1349
HpyF10VI GCNNNNNNNGC 2 cut(s) 859, 901
HpyF3I CTNAG 4 cut(s) 477, 707, 1161, 1470
Hsp92II CATG 6 cut(s) 219, 245, 313, 736, 1264, 1276
HspAI GCGC 1 cut(s) 1131
Ksp22I TGATCA 2 cut(s) 276, 931
KspAI GTTAAC 1 cut(s) 744
Kzo9I GATC 8 cut(s) 247, 271, 276, 538, 931, 984, 1318, 1420
LmnI GCTCC 1 cut(s) 1474
LweI GCATC 1 cut(s) 1336
MaeI CTAG 3 cut(s) 1128, 1425, 1478
MaeIII GTNAC 3 cut(s) 227, 305, 1003
MalI GATC 8 cut(s) 249, 273, 278, 540, 933, 986, 1320, 1422
MbiI CCGCTC 1 cut(s) 476
MboI GATC 8 cut(s) 247, 271, 276, 538, 931, 984, 1318, 1420
MboII GAAGA 5 cut(s) 46, 242, 584, 622, 1007
MfeI CAATTG 3 cut(s) 159, 747, 988
MflI RGATCY 3 cut(s) 538, 1318, 1420
MhlI GDGCHC 1 cut(s) 29
MlyI GAGTC 5 cut(s) 299, 532, 554, 731, 1079
Mph1103I ATGCAT 1 cut(s) 1351
MroXI GAANNNNTTC 1 cut(s) 825
MseI TTAA 4 cut(s) 264, 360, 380, 743
MslI CAYNNNNRTG 2 cut(s) 737, 978
MspI CCGG 3 cut(s) 916, 1124, 1445
MspR9I CCNGG 3 cut(s) 510, 917, 1324
MunI CAATTG 3 cut(s) 159, 747, 988
Mva1269I GAATGC 2 cut(s) 48, 1104
MvaI CCWGG 2 cut(s) 510, 1324
MwoI GCNNNNNNNGC 2 cut(s) 859, 901
NciI CCSGG 1 cut(s) 917
NdeII GATC 8 cut(s) 247, 271, 276, 538, 931, 984, 1318, 1420
NheI GCTAGC 1 cut(s) 1127
NlaIII CATG 6 cut(s) 219, 245, 313, 736, 1264, 1276
NlaIV GGNNCC 2 cut(s) 540, 1422
NmeAIII GCCGAG 1 cut(s) 1465
NsiI ATGCAT 1 cut(s) 1351
NspI RCATGY 1 cut(s) 313
NspV TTCGAA 1 cut(s) 603
PceI AGGCCT 2 cut(s) 862, 895
PcsI WCGNNNNNNNCGW 1 cut(s) 1437
PctI GAATGC 2 cut(s) 48, 1104
PdmI GAANNNNTTC 1 cut(s) 825
PfeI GAWTC 3 cut(s) 175, 212, 600
PflMI CCANNNNNTGG 1 cut(s) 17
PleI GAGTC 5 cut(s) 298, 531, 554, 730, 1079
PpsI GAGTC 5 cut(s) 298, 531, 554, 730, 1079
PsiI TTATAA 1 cut(s) 1137
Psp6I CCWGG 2 cut(s) 508, 1322
PspGI CCWGG 2 cut(s) 508, 1322
PspN4I GGNNCC 2 cut(s) 540, 1422
PspPI GGNCC 1 cut(s) 887
PsuI RGATCY 3 cut(s) 538, 1318, 1420
RsaI GTAC 5 cut(s) 703, 952, 963, 1154, 1313
RsaNI GTAC 5 cut(s) 702, 951, 962, 1153, 1312
RseI CAYNNNNRTG 2 cut(s) 737, 978
SaqAI TTAA 4 cut(s) 264, 360, 380, 743
Sau3AI GATC 8 cut(s) 247, 271, 276, 538, 931, 984, 1318, 1420
Sau96I GGNCC 1 cut(s) 887
ScaI AGTACT 1 cut(s) 952
SchI GAGTC 5 cut(s) 299, 532, 554, 731, 1079
ScrFI CCNGG 3 cut(s) 510, 917, 1324
SduI GDGCHC 1 cut(s) 29
SetI ASST 8 cut(s) 490, 549, 761, 963, 1081, 1328, 1404, 1479
SfaNI GCATC 1 cut(s) 1336
SfcI CTRYAG 2 cut(s) 664, 1050
SfuI TTCGAA 1 cut(s) 603
SinI GGWCC 1 cut(s) 887
SmiMI CAYNNNNRTG 2 cut(s) 737, 978
SmlI CTYRAG 3 cut(s) 515, 946, 1376
SmoI CTYRAG 3 cut(s) 515, 946, 1376
SseBI AGGCCT 2 cut(s) 862, 895
SsiI CCGC 1 cut(s) 474
SspMI CTAG 3 cut(s) 1128, 1425, 1478
StuI AGGCCT 2 cut(s) 862, 895
StyD4I CCNGG 3 cut(s) 508, 915, 1322
StyI CCWWGG 1 cut(s) 890
TaaI ACNGT 5 cut(s) 287, 818, 1003, 1009, 1223
TaqI TCGA 4 cut(s) 182, 593, 603, 660
TatI WGTACW 2 cut(s) 701, 950
TfiI GAWTC 3 cut(s) 175, 212, 600
Tru1I TTAA 4 cut(s) 264, 360, 380, 743
Tru9I TTAA 4 cut(s) 264, 360, 380, 743
TscAI CASTG 5 cut(s) 799, 823, 836, 941, 1200
TspDTI ATGAA 4 cut(s) 204, 458, 791, 1109
TspGWI ACGGA 2 cut(s) 778, 1329
TspRI CASTG 5 cut(s) 799, 823, 836, 941, 1200
Van91I CCANNNNNTGG 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 887
XapI RAATTY 5 cut(s) 260, 337, 1210, 1248, 1265
XceI RCATGY 1 cut(s) 313
XmnI GAANNNNTTC 1 cut(s) 825
XspI CTAG 3 cut(s) 1128, 1425, 1478
ZrmI AGTACT 1 cut(s) 952
Zsp2I ATGCAT 1 cut(s) 1351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.