AT4G25440

Zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000488
Physical Location & Seq
Reverse (-)
13006690 .. 13009618
2929 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G25440.1

Sequence Viewer

Length: 1293 bp
ATGGATTTAGATATGAACGGAGGAAACAAGAGAGTCTTTCAAAGACTGGGCGGTGGCTCTAATCGGCCGACGACGGACTCAAATCAGAAGGTTTGTTTCCACTGGCGAGCTGGCCGGTGCAATCGTTACCCATGCCCTTACCTGCATAGAGAATTGCCGGGTCCGGGTTCGGGTCCAGTAGCAGCTTCTTCAAATAAAAGGGTCGCTGATGAATCTGGGTTTGCGGGTCCGAGTCACCGGAGAGGGCCTGGGTTCAGCGGGACTGCTAATAACTGGGGAAGATTTGGTGGGAACAGAACGGTGACCAAGACGGAGAAACTTTGCAAATTCTGGGTTGATGGAAATTGCCCTTATGGTGATAAATGTAGATACTTGCATTGCTGGAGCAAAGGAGATAGTTTCTCCTTGTTGACGCAGCTTGACGGGCATCAGAAGGTTGTTACTGGGATTGCTCTGCCTTCAGGATCAGATAAGCTTTACACGGCGAGTAAAGATGAAACTGTGCGAATATGGGATTGTGCTTCTGGACAGTGTACAGGTGTACTCAATCTTGGTGGGGAAGTTGGCTGCATCATTAGTGAAGGTCCCTGGCTATTGGTTGGCATGCCAAATCTTGTTAAGGCGTGGAATATCCAAAACAATGCAGACCTGAGCCTCAATGGACCTGTTGGCCAAGTATATTCATTGGTTGTGGGTACTGATCTATTGTTCGCTGGCACACAAGATGGCTCTATTTTGGTTTGGAGATACAATAGCACCACTAGCTGTTTTGATCCAGCTGCATCACTATTGGGTCACACGCTTGCAGTTGTCTCTTTATATGTTGGGGCAAACAGACTCTATTCTGGTGCCATGGACAATTCTATAAAAGTTTGGAGCCTGGATAATCTGCAGTGTATTCAAACGCTTACAGAGCATACATCAGTTGTTATGTCTCTCATTTGCTGGGATCAGTTTCTTCTGTCATGTTCATTGGACAATACCGTCAAGATATGGGCTGCTACTGAAGGTGGAAACTTAGAAGTGACATATACTCACAAAGAAGAATACGGCGTGCTAGCTCTCTGTGGCGTCCATGATGCAGAAGCCAAGCCAGTATTGCTATGTTCGTGCAATGACAATTCGTTGCACCTCTATGATTTGCCATCGTTTACGGAAAGGGGCAAAATTTTAGCTAAGCAAGAGATTCGGTCAATCCAGATAGGTCCCGGGGGCATATTTTTCACCGGTGATGGAAGTGGTCAAGTTAAAGTATGGAAGTGGTCTACTGAGTCGACCCCTATTTTGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
WD40 zf-CCCH

Protein Analysis

430

Amino Acids

46.66

Weight (kDa)

7.08

Isoelectric Point (pI)

27.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH_DUS3L PF25585 105 - 126 2.5e-06 DUS3L CCCH zinc finger domain
zf-CCCH_4 PF18044 106 - 126 4.4e-08 CCCH-type zinc finger
zf_CCCH_4 PF18345 108 - 126 2.4e-08 Zinc finger domain
Beta-prop_WDR5 PF25175 128 - 182 3.6e-07 WDR5 beta-propeller domain
WD40 PF00400 136 - 172 3e-06 WD domain, G-beta repeat
Beta-prop_WDR3_1st PF25173 137 - 180 1.8e-06 WDR3 first beta-propeller domain
Beta-prop_THOC3 PF25174 137 - 313 3.5e-21 THOC3 beta-propeller domain
Beta-prop_EML_2 PF23414 148 - 340 1.8e-08 Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz PF24807 193 - 346 1.6e-10 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 199 - 381 3.5e-19 WDR3 first beta-propeller domain
WD40_WDHD1_1st PF24817 201 - 425 4.9e-11 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 206 - 381 1e-15 WDR5 beta-propeller domain
WDR55 PF24796 233 - 381 8.4e-07 WDR55
WD40_Prp19 PF24814 233 - 313 6.5e-06 Prp19 WD40 domain
Beta-prop_SCAP PF24017 236 - 338 6.3e-06 SCAP Beta-propeller
Beta-prop_WDR3_2nd PF25172 260 - 379 1.2e-09 WDR3 second beta-propeller domain
WD40_Prp19 PF24814 278 - 424 8.7e-15 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 278 - 423 6.5e-14 THOC3 beta-propeller domain
WD40 PF00400 298 - 332 7.1e-06 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000488)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25440 AT4G25440 AT4G25440 AT5G51980 AT5G51980
fragaria_vesca FvH4_2g11580 FvH4_3g29280 FvH4_4g05980 FvH4_7g28880 FvH4_7g28880
malus_domestica MD01G1195600.v1.1 MD02G1195200.v1.1 MD07G1262400.v1.1
prunus_persica Prupe.2G102200_v2.0.a1 Prupe.2G102200_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G288900_v2.0.a1
pyrus_communis pycom01g20620 pycom02g15900 pycom07g24140
rosa_chinensis RchiOBHm_Chr1g0376561 RchiOBHm_Chr3g0483051 RchiOBHm_Chr3g0483061 RchiOBHm_Chr3g0483601 RchiOBHm_Chr3g0483611 RchiOBHm_Chr4g0402321 RchiOBHm_Chr6g0270771
rosa_laevigata RLG00000009464 RLG00000009486 RLG00000013770 RLG00000023264 RLG00000023325 RLG00000026601 RLG00000035049
rosa_multiflora Rmu_co8110388.1_g000001 Rmu_co8419409.1_g000001 Rmu_sc0000555.1_g000012 Rmu_sc0000642.1_g000020 Rmu_sc0001308.1_g000010 Rmu_sc0002963.1_g000021 Rmu_sc0004788.1_g000012 Rmu_sc0005594.1_g000015 Rmu_sc0022770.1_g000001
rosa_roxburghii Rroxscaffold_4G00282000 Rroxscaffold_5G00341940 Rroxscaffold_5G00341950 Rroxscaffold_6G00398950 Rroxscaffold_7G00197610
rosa_rugosa Rorug01G0396500 Rorug03G0207400 Rorug03G0346000 Rorug04G0166800 Rorug06G0056400 Rorug06G0056500
rosa_samantha Rh1AG412700 Rh1BG372400 Rh1BG372600 Rh1CG386200 Rh1CG386500 Rh1DG403300 Rh1DG403500 Rh3AG255500 Rh3AG255600 Rh3BG292600 Rh3CG290200 Rh3DG278800 Rh3DG286100 Rh4AG075500 Rh4AG111600 Rh4BG071900 Rh4BG072100 Rh4BG231300 Rh4CG080200 Rh4CG080300 Rh4DG069300 Rh4DG069500 Rh6AG175700 Rh6BG178900 Rh6CG175200 Rh6DG167500
rosa_wichuraiana Rw1G036190 Rw3G023110 Rw4G006070 Rw6G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 983
Acc36I ACCTGC 1 cut(s) 150
AccB1I GGYRCC 1 cut(s) 848
AccI GTMKAC 2 cut(s) 1265, 1274
AciI CCGC 3 cut(s) 51, 224, 258
AclWI GGATC 3 cut(s) 472, 767, 957
AcoI YGGCCR 3 cut(s) 65, 112, 670
AcsI RAATTY 2 cut(s) 326, 1167
AcuI CTGAAG 2 cut(s) 444, 1026
AcyI GRCGYC 1 cut(s) 1071
AfaI GTAC 3 cut(s) 535, 543, 697
AfiI CCNNNNNNNGG 2 cut(s) 164, 170
AgeI ACCGGT 1 cut(s) 1226
AgsI TTSAA 3 cut(s) 41, 192, 902
AjnI CCWGG 3 cut(s) 247, 587, 879
AluBI AGCT 8 cut(s) 110, 185, 418, 475, 765, 779, 1061, 1175
AluI AGCT 8 cut(s) 110, 185, 418, 475, 765, 779, 1061, 1175
Alw26I GTCTC 2 cut(s) 817, 939
AlwI GGATC 3 cut(s) 472, 767, 957
Ama87I CYCGRG 1 cut(s) 1208
AoxI GGCC 4 cut(s) 65, 112, 245, 670
ApeKI GCWGC 5 cut(s) 182, 415, 567, 779, 998
ApoI RAATTY 2 cut(s) 326, 1167
ArsI GACNNNNNNTTYG 1 cut(s) 1267
AsiGI ACCGGT 1 cut(s) 1226
AspS9I GGNCC 7 cut(s) 161, 173, 227, 245, 584, 662, 1205
AsuC2I CCSGG 4 cut(s) 159, 165, 1209, 1210
AsuHPI GGTGA 5 cut(s) 227, 313, 368, 1216, 1241
AsuNHI GCTAGC 1 cut(s) 1057
AvaI CYCGRG 1 cut(s) 1208
AvaII GGWCC 6 cut(s) 161, 173, 227, 584, 662, 1205
BalI TGGCCA 1 cut(s) 672
BanI GGYRCC 1 cut(s) 848
BbvI GCAGC 5 cut(s) 194, 427, 554, 766, 985
BccI CCATC 4 cut(s) 332, 719, 1153, 1226
BceAI ACGGC 2 cut(s) 498, 1066
BcgI CGANNNNNNTGC 2 cut(s) 1169, 1203
BciT130I CCWGG 3 cut(s) 249, 589, 881
BcnI CCSGG 4 cut(s) 159, 165, 1209, 1210
BcoDI GTCTC 2 cut(s) 817, 939
BfaI CTAG 2 cut(s) 762, 1058
BfmI CTRYAG 1 cut(s) 890
BfuAI ACCTGC 1 cut(s) 150
BisI GCNGC 5 cut(s) 183, 416, 568, 780, 999
BlpI GCTNAGC 1 cut(s) 1176
BlsI GCNGC 5 cut(s) 184, 417, 569, 781, 1000
Bme1390I CCNGG 7 cut(s) 159, 165, 249, 589, 881, 1209, 1210
Bme18I GGWCC 6 cut(s) 161, 173, 227, 584, 662, 1205
BmeT110I CYCGRG 1 cut(s) 1208
BmgT120I GGNCC 7 cut(s) 161, 173, 227, 245, 584, 662, 1205
BmiI GGNNCC 7 cut(s) 162, 174, 228, 586, 850, 878, 1207
BmrFI CCNGG 7 cut(s) 159, 165, 249, 589, 881, 1209, 1210
BmrI ACTGGG 3 cut(s) 56, 283, 453
BmsI GCATC 4 cut(s) 436, 579, 791, 1069
BmtI GCTAGC 1 cut(s) 1061
BmuI ACTGGG 3 cut(s) 56, 283, 453
BpmI CTGGAG 1 cut(s) 403
Bpu10I CCTNAGC 1 cut(s) 650
Bpu1102I GCTNAGC 1 cut(s) 1176
BpuMI CCSGG 4 cut(s) 159, 165, 1209, 1210
BsaHI GRCGYC 1 cut(s) 1071
BsaJI CCNNGG 5 cut(s) 248, 587, 852, 1208, 1209
BsaWI WCCGGW 2 cut(s) 237, 1226
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 170
Bse118I RCCGGY 2 cut(s) 114, 1226
Bse1I ACTGG 6 cut(s) 51, 107, 176, 278, 448, 1094
Bse3DI GCAATG 2 cut(s) 376, 1120
BseBI CCWGG 3 cut(s) 249, 589, 881
BseDI CCNNGG 5 cut(s) 248, 587, 852, 1208, 1209
BseLI CCNNNNNNNGG 2 cut(s) 164, 170
BseMI GCAATG 2 cut(s) 376, 1120
BseMII CTCAG 2 cut(s) 641, 1260
BseNI ACTGG 6 cut(s) 51, 107, 176, 278, 448, 1094
BseX3I CGGCCG 1 cut(s) 65
BseXI GCAGC 5 cut(s) 194, 427, 554, 766, 985
BseYI CCCAGC 1 cut(s) 945
Bsh1285I CGRYCG 1 cut(s) 68
BshFI GGCC 4 cut(s) 67, 114, 247, 672
BshNI GGYRCC 1 cut(s) 848
BshTI ACCGGT 1 cut(s) 1226
BsiEI CGRYCG 1 cut(s) 68
BsiHKCI CYCGRG 1 cut(s) 1208
BsiSI CCGG 6 cut(s) 115, 158, 164, 238, 1209, 1227
BslFI GGGAC 3 cut(s) 274, 570, 1191
BslI CCNNNNNNNGG 2 cut(s) 164, 170
BsmAI GTCTC 2 cut(s) 817, 939
BsmFI GGGAC 3 cut(s) 274, 570, 1191
BsnI GGCC 4 cut(s) 67, 114, 247, 672
BsoBI CYCGRG 1 cut(s) 1208
Bsp1407I TGTACA 1 cut(s) 533
Bsp143I GATC 4 cut(s) 464, 700, 772, 949
Bsp1720I GCTNAGC 1 cut(s) 1176
Bsp19I CCATGG 1 cut(s) 852
BspACI CCGC 3 cut(s) 51, 224, 258
BspANI GGCC 4 cut(s) 67, 114, 247, 672
BspCNI CTCAG 2 cut(s) 642, 1261
BspLI GGNNCC 7 cut(s) 162, 174, 228, 586, 850, 878, 1207
BspMAI CTGCAG 1 cut(s) 894
BspMI ACCTGC 1 cut(s) 150
BspOI GCTAGC 1 cut(s) 1061
BspPI GGATC 3 cut(s) 472, 767, 957
BspT107I GGYRCC 1 cut(s) 848
BsrDI GCAATG 2 cut(s) 376, 1120
BsrFI RCCGGY 2 cut(s) 114, 1226
BsrGI TGTACA 1 cut(s) 533
BsrI ACTGG 6 cut(s) 51, 107, 176, 278, 448, 1094
BssAI RCCGGY 2 cut(s) 114, 1226
BssECI CCNNGG 5 cut(s) 248, 587, 852, 1208, 1209
BssMI GATC 4 cut(s) 464, 700, 772, 949
BssNI GRCGYC 1 cut(s) 1071
BssT1I CCWWGG 1 cut(s) 852
Bst2UI CCWGG 3 cut(s) 249, 589, 881
Bst4CI ACNGT 4 cut(s) 301, 502, 531, 985
BstACI GRCGYC 1 cut(s) 1071
BstAUI TGTACA 1 cut(s) 533
BstC8I GCNNGC 7 cut(s) 108, 112, 605, 715, 804, 1055, 1059
BstDEI CTNAG 4 cut(s) 650, 1018, 1176, 1269
BstDSI CCRYGG 1 cut(s) 852
BstEII GGTNACC 1 cut(s) 301
BstKTI GATC 4 cut(s) 467, 703, 775, 952
BstMAI GTCTC 2 cut(s) 817, 939
BstMBI GATC 4 cut(s) 464, 700, 772, 949
BstMCI CGRYCG 1 cut(s) 68
BstMWI GCNNNNNNNGC 4 cut(s) 424, 762, 913, 1099
BstNI CCWGG 3 cut(s) 249, 589, 881
BstNSI RCATGY 1 cut(s) 607
BstPI GGTNACC 1 cut(s) 301
BstSCI CCNGG 7 cut(s) 157, 163, 247, 587, 879, 1207, 1208
BstSFI CTRYAG 1 cut(s) 890
BstV1I GCAGC 5 cut(s) 194, 427, 554, 766, 985
BstZI CGGCCG 1 cut(s) 65
BsuRI GGCC 4 cut(s) 67, 114, 247, 672
BtgI CCRYGG 1 cut(s) 852
BtsI GCAGTG 1 cut(s) 899
BtsIMutI CAGTG 3 cut(s) 100, 536, 899
BveI ACCTGC 1 cut(s) 150
Cac8I GCNNGC 7 cut(s) 108, 112, 605, 715, 804, 1055, 1059
Cfr10I RCCGGY 2 cut(s) 114, 1226
Cfr13I GGNCC 7 cut(s) 161, 173, 227, 245, 584, 662, 1205
Cfr9I CCCGGG 1 cut(s) 1208
CseI GACGC 2 cut(s) 421, 1060
Csp6I GTAC 3 cut(s) 534, 542, 696
CspAI ACCGGT 1 cut(s) 1226
CspCI CAANNNNNGTGG 2 cut(s) 535, 570
CviAII CATG 5 cut(s) 132, 604, 853, 966, 1076
CviQI GTAC 3 cut(s) 534, 542, 696
DdeI CTNAG 4 cut(s) 650, 1018, 1176, 1269
DpnI GATC 4 cut(s) 466, 702, 774, 951
DpnII GATC 4 cut(s) 464, 700, 772, 949
DrdI GACNNNNNNGTC 1 cut(s) 983
DseDI GACNNNNNNGTC 1 cut(s) 983
EaeI YGGCCR 3 cut(s) 65, 112, 670
EagI CGGCCG 1 cut(s) 65
EclXI CGGCCG 1 cut(s) 65
Eco130I CCWWGG 1 cut(s) 852
Eco47I GGWCC 6 cut(s) 161, 173, 227, 584, 662, 1205
Eco52I CGGCCG 1 cut(s) 65
Eco57I CTGAAG 2 cut(s) 444, 1026
Eco88I CYCGRG 1 cut(s) 1208
Eco91I GGTNACC 1 cut(s) 301
EcoO109I RGGNCCY 3 cut(s) 245, 584, 1205
EcoO65I GGTNACC 1 cut(s) 301
EcoRII CCWGG 3 cut(s) 247, 587, 879
EcoT14I CCWWGG 1 cut(s) 852
ErhI CCWWGG 1 cut(s) 852
FaeI CATG 5 cut(s) 135, 607, 856, 969, 1079
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FaqI GGGAC 3 cut(s) 274, 570, 1191
FatI CATG 5 cut(s) 131, 603, 852, 965, 1075
FauI CCCGC 2 cut(s) 217, 251
FblI GTMKAC 2 cut(s) 1265, 1274
Fnu4HI GCNGC 5 cut(s) 183, 416, 568, 780, 999
Fsp4HI GCNGC 5 cut(s) 183, 416, 568, 780, 999
FspBI CTAG 2 cut(s) 762, 1058
GluI GCNGC 5 cut(s) 183, 416, 568, 780, 999
GsaI CCCAGC 1 cut(s) 949
GsuI CTGGAG 1 cut(s) 403
HaeIII GGCC 4 cut(s) 67, 114, 247, 672
HapII CCGG 6 cut(s) 115, 158, 164, 238, 1209, 1227
HgaI GACGC 2 cut(s) 421, 1060
Hin1I GRCGYC 1 cut(s) 1071
Hin1II CATG 5 cut(s) 135, 607, 856, 969, 1079
HincII GTYRAC 2 cut(s) 411, 1275
HindII GTYRAC 2 cut(s) 411, 1275
HindIII AAGCTT 1 cut(s) 473
HinfI GANTC 7 cut(s) 33, 77, 212, 232, 837, 1186, 1271
HpaII CCGG 6 cut(s) 115, 158, 164, 238, 1209, 1227
HphI GGTGA 5 cut(s) 227, 313, 368, 1216, 1241
Hpy166II GTNNAC 6 cut(s) 411, 534, 542, 1152, 1266, 1275
Hpy188I TCNGA 4 cut(s) 87, 231, 432, 469
Hpy188III TCNNGA 5 cut(s) 462, 525, 988, 1198, 1290
Hpy8I GTNNAC 6 cut(s) 411, 534, 542, 1152, 1266, 1275
Hpy99I CGWCG 2 cut(s) 73, 76
HpyAV CCTTC 5 cut(s) 82, 427, 468, 575, 1001
HpyCH4III ACNGT 4 cut(s) 301, 502, 531, 985
HpyF10VI GCNNNNNNNGC 4 cut(s) 424, 762, 913, 1099
HpyF3I CTNAG 4 cut(s) 650, 1018, 1176, 1269
Hsp92I GRCGYC 1 cut(s) 1071
Hsp92II CATG 5 cut(s) 135, 607, 856, 969, 1079
Kzo9I GATC 4 cut(s) 464, 700, 772, 949
LmnI GCTCC 2 cut(s) 384, 876
Lsp1109I GCAGC 5 cut(s) 194, 427, 554, 766, 985
LweI GCATC 4 cut(s) 436, 579, 791, 1069
MaeI CTAG 2 cut(s) 762, 1058
MaeIII GTNAC 6 cut(s) 125, 233, 301, 439, 794, 1024
MalI GATC 4 cut(s) 466, 702, 774, 951
MboI GATC 4 cut(s) 464, 700, 772, 949
MboII GAAGA 4 cut(s) 180, 291, 950, 1055
MlsI TGGCCA 1 cut(s) 672
MluCI AATT 6 cut(s) 152, 326, 343, 859, 1120, 1167
MluNI TGGCCA 1 cut(s) 672
MlyI GAGTC 5 cut(s) 42, 71, 241, 831, 1280
MnlI CCTC 4 cut(s) 14, 236, 665, 1142
Mox20I TGGCCA 1 cut(s) 672
MscI TGGCCA 1 cut(s) 672
MseI TTAA 2 cut(s) 618, 1248
MslI CAYNNNNRTG 1 cut(s) 1134
Msp20I TGGCCA 1 cut(s) 672
MspA1I CMGCKG 2 cut(s) 258, 779
MspI CCGG 6 cut(s) 115, 158, 164, 238, 1209, 1227
MspR9I CCNGG 7 cut(s) 159, 165, 249, 589, 881, 1209, 1210
MvaI CCWGG 3 cut(s) 249, 589, 881
MwoI GCNNNNNNNGC 4 cut(s) 424, 762, 913, 1099
NciI CCSGG 4 cut(s) 159, 165, 1209, 1210
NcoI CCATGG 1 cut(s) 852
NdeII GATC 4 cut(s) 464, 700, 772, 949
NheI GCTAGC 1 cut(s) 1057
NlaIII CATG 5 cut(s) 135, 607, 856, 969, 1079
NlaIV GGNNCC 7 cut(s) 162, 174, 228, 586, 850, 878, 1207
NmuCI GTSAC 4 cut(s) 233, 301, 794, 1024
NspI RCATGY 1 cut(s) 607
PaeI GCATGC 1 cut(s) 607
PfeI GAWTC 2 cut(s) 212, 1186
PinAI ACCGGT 1 cut(s) 1226
PkrI GCNGC 5 cut(s) 184, 417, 569, 781, 1000
PleI GAGTC 5 cut(s) 41, 71, 240, 831, 1279
PpsI GAGTC 5 cut(s) 41, 71, 240, 831, 1279
PpuMI RGGWCCY 2 cut(s) 584, 1205
Psp5II RGGWCCY 2 cut(s) 584, 1205
Psp6I CCWGG 3 cut(s) 247, 587, 879
PspEI GGTNACC 1 cut(s) 301
PspFI CCCAGC 1 cut(s) 945
PspGI CCWGG 3 cut(s) 247, 587, 879
PspN4I GGNNCC 7 cut(s) 162, 174, 228, 586, 850, 878, 1207
PspPI GGNCC 7 cut(s) 161, 173, 227, 245, 584, 662, 1205
PspPPI RGGWCCY 2 cut(s) 584, 1205
PstI CTGCAG 1 cut(s) 894
PvuII CAGCTG 1 cut(s) 779
RsaI GTAC 3 cut(s) 535, 543, 697
RsaNI GTAC 3 cut(s) 534, 542, 696
RseI CAYNNNNRTG 1 cut(s) 1134
SalI GTCGAC 1 cut(s) 1273
SaqAI TTAA 2 cut(s) 618, 1248
SatI GCNGC 5 cut(s) 183, 416, 568, 780, 999
Sau3AI GATC 4 cut(s) 464, 700, 772, 949
Sau96I GGNCC 7 cut(s) 161, 173, 227, 245, 584, 662, 1205
SchI GAGTC 5 cut(s) 42, 71, 241, 831, 1280
ScrFI CCNGG 7 cut(s) 159, 165, 249, 589, 881, 1209, 1210
SfaNI GCATC 4 cut(s) 436, 579, 791, 1069
SfcI CTRYAG 1 cut(s) 890
SgrAI CRCCGGYG 1 cut(s) 1226
SinI GGWCC 6 cut(s) 161, 173, 227, 584, 662, 1205
SmaI CCCGGG 1 cut(s) 1210
SmiMI CAYNNNNRTG 1 cut(s) 1134
SphI GCATGC 1 cut(s) 607
Sse9I AATT 6 cut(s) 152, 326, 343, 859, 1120, 1167
SsiI CCGC 3 cut(s) 51, 224, 258
SspMI CTAG 2 cut(s) 762, 1058
StyD4I CCNGG 7 cut(s) 157, 163, 247, 587, 879, 1207, 1208
StyI CCWWGG 1 cut(s) 852
TaaI ACNGT 4 cut(s) 301, 502, 531, 985
TaqI TCGA 1 cut(s) 1274
TaqII GACCGA 1 cut(s) 1179
TasI AATT 6 cut(s) 152, 326, 343, 859, 1120, 1167
TatI WGTACW 2 cut(s) 533, 541
TfiI GAWTC 2 cut(s) 212, 1186
Tru1I TTAA 2 cut(s) 618, 1248
Tru9I TTAA 2 cut(s) 618, 1248
TscAI CASTG 3 cut(s) 107, 536, 899
TseFI GTSAC 4 cut(s) 233, 301, 794, 1024
TseI GCWGC 5 cut(s) 182, 415, 567, 779, 998
Tsp45I GTSAC 4 cut(s) 233, 301, 794, 1024
TspDTI ATGAA 5 cut(s) 29, 225, 510, 672, 960
TspGWI ACGGA 4 cut(s) 33, 89, 326, 1169
TspMI CCCGGG 1 cut(s) 1208
TspRI CASTG 3 cut(s) 107, 536, 899
VpaK11BI GGWCC 6 cut(s) 161, 173, 227, 584, 662, 1205
XapI RAATTY 2 cut(s) 326, 1167
XceI RCATGY 1 cut(s) 607
XcmI CCANNNNNNNNNTGG 1 cut(s) 107
XmaI CCCGGG 1 cut(s) 1208
XmiI GTMKAC 2 cut(s) 1265, 1274
XspI CTAG 2 cut(s) 762, 1058
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.