RLG00000035049

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000488
Physical Location & Seq
Forward (+)
59811323 .. 59817469
6147 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035049

Sequence Viewer

Length: 891 bp
ATGGCTCTCAGGGTATCCAATTCTAGACTCACAAGGACAGAGGGATCCGTTTATGCAAGAAGACCTGCTGCCGAAACCGTCTGCAAGTTTTGGGCGATGAGCAGATGCCTCAAGAAAGAGTGTCGGTTCCTACACGCTGACCCGGAACAAAAGAGTCCTGCTTTAATGGCAGAGAAGGCAAAATCTATGGGGAAAGCGTCTGATTCTGCTACTGTAAATGTTGACAAAAGCATTGGTACCCATAAAGAGAAAGCAAAGGCCGAAGCAGTCTACAAGTTCTGGGCGGATGGAATCAGGGTAATCAATCTTGGTGCTGAAGCAGGTTGCTTGATTAGTAAGGGTGCATGGGTTTTCTGTGGTGCTTCCAATCTCGTCACGGCGTGGAATATTCAGTCTAATGCTGAATTCACCCTAGCTGGACCTAGTGGTCAAATCCATGCCATGGAAGTTGGGAATGATATGGCTCTCAGTGGCCACAGTGCTGCTGTGGTTTCTTTAAGGGTTGGAAATATTAGACTCCACTCAGGTTCTATAAACCATACAATAAGGGTGTGGAAGCTGGACACTTTAGGGTGTGCTATGACTCTAAATGGACATTCTGATGCTGAGGCAACATTGAAGAAATCTACACCCACACTGAAGAAGACGGTCTTGTTGCTCTCTCTGGAATGCATGATGCTGAAGATAAACCAGTCCTACTTTTGCTCATCAAAGGACAATTCTGTCCGCTTATATGATTTGCCATCCTTTGATAAGAGGGGAAGATTATTTGCAAAACTAGAAGTTCGGGCTATTCAAGTAGGCCCTAGAGGACTATTCTTCACTGGGGATGGAACTGGTGGACTTTCCATGTGGAAGTGGTTGGAATCTGCAGTCAAACATGAGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04120 map03040 map04120
Pfam Domains
Protein Families
WD40 zf-CCCH

Protein Analysis

297

Amino Acids

32.29

Weight (kDa)

9.51

Isoelectric Point (pI)

31.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR3_1st PF25173 152 - 286 3e-07 WDR3 first beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000488)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25440 AT4G25440 AT4G25440 AT5G51980 AT5G51980
fragaria_vesca FvH4_2g11580 FvH4_3g29280 FvH4_4g05980 FvH4_7g28880 FvH4_7g28880
malus_domestica MD01G1195600.v1.1 MD02G1195200.v1.1 MD07G1262400.v1.1
prunus_persica Prupe.2G102200_v2.0.a1 Prupe.2G102200_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G288900_v2.0.a1
pyrus_communis pycom01g20620 pycom02g15900 pycom07g24140
rosa_chinensis RchiOBHm_Chr1g0376561 RchiOBHm_Chr3g0483051 RchiOBHm_Chr3g0483061 RchiOBHm_Chr3g0483601 RchiOBHm_Chr3g0483611 RchiOBHm_Chr4g0402321 RchiOBHm_Chr6g0270771
rosa_laevigata RLG00000009464 RLG00000009486 RLG00000013770 RLG00000023264 RLG00000023325 RLG00000026601 RLG00000035049
rosa_multiflora Rmu_co8110388.1_g000001 Rmu_co8419409.1_g000001 Rmu_sc0000555.1_g000012 Rmu_sc0000642.1_g000020 Rmu_sc0001308.1_g000010 Rmu_sc0002963.1_g000021 Rmu_sc0004788.1_g000012 Rmu_sc0005594.1_g000015 Rmu_sc0022770.1_g000001
rosa_roxburghii Rroxscaffold_4G00282000 Rroxscaffold_5G00341940 Rroxscaffold_5G00341950 Rroxscaffold_6G00398950 Rroxscaffold_7G00197610
rosa_rugosa Rorug01G0396500 Rorug03G0207400 Rorug03G0346000 Rorug04G0166800 Rorug06G0056400 Rorug06G0056500
rosa_samantha Rh1AG412700 Rh1BG372400 Rh1BG372600 Rh1CG386200 Rh1CG386500 Rh1DG403300 Rh1DG403500 Rh3AG255500 Rh3AG255600 Rh3BG292600 Rh3CG290200 Rh3DG278800 Rh3DG286100 Rh4AG075500 Rh4AG111600 Rh4BG071900 Rh4BG072100 Rh4BG231300 Rh4CG080200 Rh4CG080300 Rh4DG069300 Rh4DG069500 Rh6AG175700 Rh6BG178900 Rh6CG175200 Rh6DG167500
rosa_wichuraiana Rw1G036190 Rw3G023110 Rw4G006070 Rw6G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 426, 722
Acc36I ACCTGC 2 cut(s) 73, 311
Acc65I GGTACC 1 cut(s) 236
AccB1I GGYRCC 1 cut(s) 236
AccB7I CCANNNNNTGG 1 cut(s) 442
AccI GTMKAC 1 cut(s) 270
AciI CCGC 2 cut(s) 284, 727
AclWI GGATC 2 cut(s) 39, 52
AcoI YGGCCR 1 cut(s) 472
AcsI RAATTY 1 cut(s) 404
AcuI CTGAAG 3 cut(s) 336, 659, 701
AdeI CACNNNGTG 1 cut(s) 381
AfaI GTAC 1 cut(s) 238
AfiI CCNNNNNNNGG 1 cut(s) 442
AgsI TTSAA 2 cut(s) 619, 797
AluBI AGCT 2 cut(s) 416, 559
AluI AGCT 2 cut(s) 416, 559
AlwI GGATC 2 cut(s) 39, 52
AoxI GGCC 3 cut(s) 258, 472, 802
ApeKI GCWGC 2 cut(s) 68, 482
ApoI RAATTY 1 cut(s) 404
Asp718I GGTACC 1 cut(s) 236
AspS9I GGNCC 2 cut(s) 419, 803
AsuC2I CCSGG 1 cut(s) 143
AsuHPI GGTGA 1 cut(s) 400
AvaII GGWCC 1 cut(s) 419
BalI TGGCCA 1 cut(s) 474
BamHI GGATCC 1 cut(s) 44
BanI GGYRCC 1 cut(s) 236
BbsI GAAGAC 2 cut(s) 67, 650
BbvCI CCTCAGC 1 cut(s) 606
BbvI GCAGC 2 cut(s) 55, 469
BccI CCATC 3 cut(s) 281, 751, 824
BceAI ACGGC 1 cut(s) 393
BciVI GTATCC 1 cut(s) 25
BcnI CCSGG 1 cut(s) 143
BfaI CTAG 5 cut(s) 24, 413, 423, 779, 807
BfmI CTRYAG 1 cut(s) 870
BfuAI ACCTGC 2 cut(s) 73, 311
BfuI GTATCC 1 cut(s) 25
BisI GCNGC 2 cut(s) 69, 483
BlsI GCNGC 2 cut(s) 70, 484
Bme1390I CCNGG 1 cut(s) 143
Bme18I GGWCC 1 cut(s) 419
BmgT120I GGNCC 2 cut(s) 419, 803
BmiI GGNNCC 3 cut(s) 46, 128, 238
BmrFI CCNGG 1 cut(s) 143
BmrI ACTGGG 1 cut(s) 834
BmsI GCATC 3 cut(s) 95, 592, 666
BmuI ACTGGG 1 cut(s) 834
BpiI GAAGAC 2 cut(s) 67, 650
Bpu10I CCTNAGC 1 cut(s) 606
BpuEI CTTGAG 1 cut(s) 95
BpuMI CCSGG 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 441
Bsc4I CCNNNNNNNGG 1 cut(s) 442
Bse1I ACTGG 3 cut(s) 691, 829, 841
BseDI CCNNGG 1 cut(s) 441
BseGI GGATG 3 cut(s) 292, 743, 835
BseLI CCNNNNNNNGG 1 cut(s) 442
BseMII CTCAG 4 cut(s) 22, 481, 537, 597
BseNI ACTGG 3 cut(s) 691, 829, 841
BseXI GCAGC 2 cut(s) 55, 469
BshFI GGCC 3 cut(s) 260, 474, 804
BshNI GGYRCC 1 cut(s) 236
BsiSI CCGG 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 442
BsmI GAATGC 1 cut(s) 674
BsnI GGCC 3 cut(s) 260, 474, 804
Bsp143I GATC 1 cut(s) 44
Bsp19I CCATGG 1 cut(s) 441
BspACI CCGC 2 cut(s) 284, 727
BspANI GGCC 3 cut(s) 260, 474, 804
BspCNI CTCAG 4 cut(s) 21, 480, 536, 598
BspHI TCATGA 1 cut(s) 887
BspLI GGNNCC 3 cut(s) 46, 128, 238
BspMAI CTGCAG 1 cut(s) 874
BspMI ACCTGC 2 cut(s) 73, 311
BspPI GGATC 2 cut(s) 39, 52
BspT107I GGYRCC 1 cut(s) 236
BsrI ACTGG 3 cut(s) 691, 829, 841
BssECI CCNNGG 1 cut(s) 441
BssMI GATC 1 cut(s) 44
BssT1I CCWWGG 1 cut(s) 441
Bst4CI ACNGT 4 cut(s) 79, 214, 479, 649
BstDEI CTNAG 4 cut(s) 8, 467, 523, 606
BstDSI CCRYGG 1 cut(s) 441
BstF5I GGATG 3 cut(s) 292, 743, 835
BstKTI GATC 1 cut(s) 47
BstMBI GATC 1 cut(s) 44
BstMWI GCNNNNNNNGC 2 cut(s) 167, 176
BstSCI CCNGG 1 cut(s) 141
BstSFI CTRYAG 1 cut(s) 870
BstV1I GCAGC 2 cut(s) 55, 469
BstV2I GAAGAC 2 cut(s) 67, 650
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
BsuI GTATCC 1 cut(s) 25
BsuRI GGCC 3 cut(s) 260, 474, 804
BtgI CCRYGG 1 cut(s) 441
BtgZI GCGATG 1 cut(s) 110
BtsCI GGATG 3 cut(s) 292, 743, 835
BtsIMutI CAGTG 4 cut(s) 475, 484, 635, 822
BveI ACCTGC 2 cut(s) 73, 311
CciI TCATGA 1 cut(s) 887
Cfr13I GGNCC 2 cut(s) 419, 803
CseI GACGC 1 cut(s) 186
Csp6I GTAC 1 cut(s) 237
CviAII CATG 7 cut(s) 345, 437, 442, 673, 850, 881, 888
CviJI RGCY 8 cut(s) 5, 260, 416, 464, 474, 559, 791, 804
CviKI_1 RGCY 8 cut(s) 5, 260, 416, 464, 474, 559, 791, 804
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 4 cut(s) 8, 467, 523, 606
DpnI GATC 1 cut(s) 46
DpnII GATC 1 cut(s) 44
DraIII CACNNNGTG 1 cut(s) 381
DrdI GACNNNNNNGTC 2 cut(s) 426, 722
DseDI GACNNNNNNGTC 2 cut(s) 426, 722
EaeI YGGCCR 1 cut(s) 472
EciI GGCGGA 1 cut(s) 299
Eco130I CCWWGG 1 cut(s) 441
Eco47I GGWCC 1 cut(s) 419
Eco57I CTGAAG 3 cut(s) 336, 659, 701
EcoO109I RGGNCCY 1 cut(s) 803
EcoRI GAATTC 1 cut(s) 404
EcoT14I CCWWGG 1 cut(s) 441
EcoT22I ATGCAT 1 cut(s) 674
ErhI CCWWGG 1 cut(s) 441
FaeI CATG 7 cut(s) 348, 440, 445, 676, 853, 884, 891
FalI AAGNNNNNCTT 2 cut(s) 635, 667
FatI CATG 7 cut(s) 344, 436, 441, 672, 849, 880, 887
FblI GTMKAC 1 cut(s) 270
Fnu4HI GCNGC 2 cut(s) 69, 483
FokI GGATG 3 cut(s) 299, 730, 842
Fsp4HI GCNGC 2 cut(s) 69, 483
FspBI CTAG 5 cut(s) 24, 413, 423, 779, 807
GluI GCNGC 2 cut(s) 69, 483
HaeIII GGCC 3 cut(s) 260, 474, 804
HapII CCGG 1 cut(s) 143
HgaI GACGC 1 cut(s) 186
Hin1II CATG 7 cut(s) 348, 440, 445, 676, 853, 884, 891
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HinfI GANTC 8 cut(s) 27, 154, 203, 291, 516, 583, 866, 884
HpaII CCGG 1 cut(s) 143
HphI GGTGA 1 cut(s) 400
Hpy166II GTNNAC 3 cut(s) 223, 271, 842
Hpy188I TCNGA 2 cut(s) 202, 601
Hpy188III TCNNGA 4 cut(s) 24, 112, 665, 888
Hpy8I GTNNAC 3 cut(s) 223, 271, 842
HpyAV CCTTC 1 cut(s) 169
HpyCH4III ACNGT 4 cut(s) 79, 214, 479, 649
HpyCH4V TGCA 6 cut(s) 56, 84, 344, 672, 773, 872
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 176
HpyF3I CTNAG 4 cut(s) 8, 467, 523, 606
Hsp92II CATG 7 cut(s) 348, 440, 445, 676, 853, 884, 891
KpnI GGTACC 1 cut(s) 240
Kzo9I GATC 1 cut(s) 44
Lsp1109I GCAGC 2 cut(s) 55, 469
LweI GCATC 3 cut(s) 95, 592, 666
MaeI CTAG 5 cut(s) 24, 413, 423, 779, 807
MaeIII GTNAC 1 cut(s) 373
MalI GATC 1 cut(s) 46
MboI GATC 1 cut(s) 44
MboII GAAGA 7 cut(s) 72, 631, 652, 655, 694, 774, 811
MflI RGATCY 1 cut(s) 44
MlsI TGGCCA 1 cut(s) 474
MluCI AATT 3 cut(s) 19, 404, 718
MluNI TGGCCA 1 cut(s) 474
MlyI GAGTC 4 cut(s) 21, 163, 510, 577
MmeI TCCRAC 2 cut(s) 484, 843
MnlI CCTC 5 cut(s) 34, 119, 601, 750, 803
Mox20I TGGCCA 1 cut(s) 474
Mph1103I ATGCAT 1 cut(s) 674
MscI TGGCCA 1 cut(s) 474
MseI TTAA 2 cut(s) 164, 497
MslI CAYNNNNRTG 1 cut(s) 600
Msp20I TGGCCA 1 cut(s) 474
MspI CCGG 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 143
Mva1269I GAATGC 1 cut(s) 674
MwoI GCNNNNNNNGC 2 cut(s) 167, 176
NciI CCSGG 1 cut(s) 143
NcoI CCATGG 1 cut(s) 441
NdeII GATC 1 cut(s) 44
NlaIII CATG 7 cut(s) 348, 440, 445, 676, 853, 884, 891
NlaIV GGNNCC 3 cut(s) 46, 128, 238
NmuCI GTSAC 1 cut(s) 373
NsiI ATGCAT 1 cut(s) 674
PagI TCATGA 1 cut(s) 887
PctI GAATGC 1 cut(s) 674
PfeI GAWTC 3 cut(s) 203, 291, 866
PflMI CCANNNNNTGG 1 cut(s) 442
PkrI GCNGC 2 cut(s) 70, 484
PleI GAGTC 4 cut(s) 21, 162, 510, 577
PpsI GAGTC 4 cut(s) 21, 162, 510, 577
PspN4I GGNNCC 3 cut(s) 46, 128, 238
PspPI GGNCC 2 cut(s) 419, 803
PstI CTGCAG 1 cut(s) 874
PsuI RGATCY 1 cut(s) 44
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
RseI CAYNNNNRTG 1 cut(s) 600
SaqAI TTAA 2 cut(s) 164, 497
SatI GCNGC 2 cut(s) 69, 483
Sau3AI GATC 1 cut(s) 44
Sau96I GGNCC 2 cut(s) 419, 803
SchI GAGTC 4 cut(s) 21, 163, 510, 577
ScrFI CCNGG 1 cut(s) 143
SetI ASST 6 cut(s) 67, 325, 418, 424, 529, 561
SfaNI GCATC 3 cut(s) 95, 592, 666
SfcI CTRYAG 1 cut(s) 870
SinI GGWCC 1 cut(s) 419
SmiMI CAYNNNNRTG 1 cut(s) 600
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 3 cut(s) 19, 404, 718
SsiI CCGC 2 cut(s) 284, 727
SspI AATATT 2 cut(s) 388, 511
SspMI CTAG 5 cut(s) 24, 413, 423, 779, 807
StyD4I CCNGG 1 cut(s) 141
StyI CCWWGG 1 cut(s) 441
TaaI ACNGT 4 cut(s) 79, 214, 479, 649
TasI AATT 3 cut(s) 19, 404, 718
TfiI GAWTC 3 cut(s) 203, 291, 866
Tru1I TTAA 2 cut(s) 164, 497
Tru9I TTAA 2 cut(s) 164, 497
TscAI CASTG 4 cut(s) 475, 484, 642, 829
TseFI GTSAC 1 cut(s) 373
TseI GCWGC 2 cut(s) 68, 482
Tsp45I GTSAC 1 cut(s) 373
TspGWI ACGGA 1 cut(s) 37
TspRI CASTG 4 cut(s) 475, 484, 642, 829
Van91I CCANNNNNTGG 1 cut(s) 442
VpaK11BI GGWCC 1 cut(s) 419
XapI RAATTY 1 cut(s) 404
XbaI TCTAGA 1 cut(s) 23
XmiI GTMKAC 1 cut(s) 270
XspI CTAG 5 cut(s) 24, 413, 423, 779, 807
Zsp2I ATGCAT 1 cut(s) 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.