Rh4AG075500

SCF-dependent proteasomal ubiquitin-dependent protein catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000488
Physical Location & Seq
Reverse (-)
15424328 .. 15425880
1553 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG075500.1

Sequence Viewer

Length: 441 bp
ATGGACCATACAATAAGGGTGTGGAATCTGGACACTTTGGAGTGTGCTATGACTCTAAATGGACATTCTGATGCTGTGACGTCTCTTATTTGTTGGACCACATTTCTGATCTCATGCTCATTAGACCACACGATAAAGGTGTGGACTATGTGTAAAGGAGGCAACATTGAAGAAATCTACACTCACACTGAAGAAGACGGTCTTCTTGCTCTCTCTGGAATGCATGATGCTGAAGACAAACCAGTCCTACTTTGCTCATCAAAAGACAATTCTGTCCGCATATATGATTTGCCATCCTTTGATGAGAGGGGAAGATTATTTGCAAAACGGGAAGTTCGGGCTATTCAAGTTGGCCTTGGAGGACTATTCTTCACTGGAGATGAAGCTGGTGGACTTTCCGTGTGGAAGTGGTTGGAACCTGCAGTCAAACAAGAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04114 ko04120 ko04218 ko04310 ko04340 ko04341 ko04390 ko04624 ko04710 ko05131 map03040 map04114 map04120 map04218 map04310 map04340 map04341 map04390 map04624 map04710 map05131
Pfam Domains
Protein Families
WD40 zf-CCCH

Protein Analysis

146

Amino Acids

16.31

Weight (kDa)

4.89

Isoelectric Point (pI)

45.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_Prp19 PF24814 1 - 135 1.6e-09 Prp19 WD40 domain
Beta-prop_WDR3_1st PF25173 2 - 136 7.9e-17 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 2 - 100 3.1e-14 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 2 - 138 2.5e-13 THOC3 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 2 - 96 2.5e-09 WDR3 second beta-propeller domain
WD40_WDHD1_1st PF24817 2 - 136 3.7e-08 WDHD1 first WD40 domain
Beta-prop_SCAP PF24017 2 - 64 4.1e-08 SCAP Beta-propeller
WD40_CDC20-Fz PF24807 3 - 106 6.4e-06 CDC20/Fizzy WD40 domain
WD40 PF00400 14 - 48 9.8e-07 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000488)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25440 AT4G25440 AT4G25440 AT5G51980 AT5G51980
fragaria_vesca FvH4_2g11580 FvH4_3g29280 FvH4_4g05980 FvH4_7g28880 FvH4_7g28880
malus_domestica MD01G1195600.v1.1 MD02G1195200.v1.1 MD07G1262400.v1.1
prunus_persica Prupe.2G102200_v2.0.a1 Prupe.2G102200_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G288900_v2.0.a1
pyrus_communis pycom01g20620 pycom02g15900 pycom07g24140
rosa_chinensis RchiOBHm_Chr1g0376561 RchiOBHm_Chr3g0483051 RchiOBHm_Chr3g0483061 RchiOBHm_Chr3g0483601 RchiOBHm_Chr3g0483611 RchiOBHm_Chr4g0402321 RchiOBHm_Chr6g0270771
rosa_laevigata RLG00000009464 RLG00000009486 RLG00000013770 RLG00000023264 RLG00000023325 RLG00000026601 RLG00000035049
rosa_multiflora Rmu_co8110388.1_g000001 Rmu_co8419409.1_g000001 Rmu_sc0000555.1_g000012 Rmu_sc0000642.1_g000020 Rmu_sc0001308.1_g000010 Rmu_sc0002963.1_g000021 Rmu_sc0004788.1_g000012 Rmu_sc0005594.1_g000015 Rmu_sc0022770.1_g000001
rosa_roxburghii Rroxscaffold_4G00282000 Rroxscaffold_5G00341940 Rroxscaffold_5G00341950 Rroxscaffold_6G00398950 Rroxscaffold_7G00197610
rosa_rugosa Rorug01G0396500 Rorug03G0207400 Rorug03G0346000 Rorug04G0166800 Rorug06G0056400 Rorug06G0056500
rosa_samantha Rh1AG412700 Rh1BG372400 Rh1BG372600 Rh1CG386200 Rh1CG386500 Rh1DG403300 Rh1DG403500 Rh3AG255500 Rh3AG255600 Rh3BG292600 Rh3CG290200 Rh3DG278800 Rh3DG286100 Rh4AG075500 Rh4AG111600 Rh4BG071900 Rh4BG072100 Rh4BG231300 Rh4CG080200 Rh4CG080300 Rh4DG069300 Rh4DG069500 Rh6AG175700 Rh6BG178900 Rh6CG175200 Rh6DG167500
rosa_wichuraiana Rw1G036190 Rw3G023110 Rw4G006070 Rw6G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 242, 272
AatII GACGTC 1 cut(s) 83
Acc36I ACCTGC 1 cut(s) 427
AciI CCGC 1 cut(s) 277
AcuI CTGAAG 2 cut(s) 210, 252
AcyI GRCGYC 1 cut(s) 80
AgsI TTSAA 2 cut(s) 170, 347
AluBI AGCT 1 cut(s) 386
AluI AGCT 1 cut(s) 386
Alw26I GTCTC 1 cut(s) 87
AoxI GGCC 1 cut(s) 352
AspS9I GGNCC 2 cut(s) 4, 96
AvaII GGWCC 2 cut(s) 4, 96
BbsI GAAGAC 3 cut(s) 194, 201, 240
BccI CCATC 1 cut(s) 301
BcoDI GTCTC 1 cut(s) 87
BfmI CTRYAG 1 cut(s) 420
BfuAI ACCTGC 1 cut(s) 427
Bme18I GGWCC 2 cut(s) 4, 96
BmgT120I GGNCC 2 cut(s) 4, 96
BmiI GGNNCC 1 cut(s) 417
BmsI GCATC 2 cut(s) 61, 217
BpiI GAAGAC 3 cut(s) 194, 201, 240
BpmI CTGGAG 1 cut(s) 396
BsaHI GRCGYC 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 355
Bse1I ACTGG 2 cut(s) 242, 379
BseDI CCNNGG 1 cut(s) 355
BseGI GGATG 1 cut(s) 293
BseNI ACTGG 2 cut(s) 242, 379
BshFI GGCC 1 cut(s) 354
BsmAI GTCTC 1 cut(s) 87
BsmBI CGTCTC 1 cut(s) 87
BsmI GAATGC 1 cut(s) 225
BsnI GGCC 1 cut(s) 354
Bsp143I GATC 1 cut(s) 108
BspACI CCGC 1 cut(s) 277
BspANI GGCC 1 cut(s) 354
BspLI GGNNCC 1 cut(s) 417
BspMAI CTGCAG 1 cut(s) 424
BspMI ACCTGC 1 cut(s) 427
BsrI ACTGG 2 cut(s) 242, 379
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 1 cut(s) 108
BssNI GRCGYC 1 cut(s) 80
BssT1I CCWWGG 1 cut(s) 355
Bst4CI ACNGT 1 cut(s) 200
BstACI GRCGYC 1 cut(s) 80
BstF5I GGATG 1 cut(s) 293
BstKTI GATC 1 cut(s) 111
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 1 cut(s) 108
BstSFI CTRYAG 1 cut(s) 420
BstV2I GAAGAC 3 cut(s) 194, 201, 240
BsuRI GGCC 1 cut(s) 354
BtsCI GGATG 1 cut(s) 293
BtsIMutI CAGTG 2 cut(s) 186, 372
BveI ACCTGC 1 cut(s) 427
Cfr13I GGNCC 2 cut(s) 4, 96
CviAII CATG 2 cut(s) 114, 224
CviJI RGCY 3 cut(s) 341, 354, 386
CviKI_1 RGCY 3 cut(s) 341, 354, 386
DpnI GATC 1 cut(s) 110
DpnII GATC 1 cut(s) 108
DrdI GACNNNNNNGTC 2 cut(s) 242, 272
DseDI GACNNNNNNGTC 2 cut(s) 242, 272
Eco130I CCWWGG 1 cut(s) 355
Eco47I GGWCC 2 cut(s) 4, 96
Eco57I CTGAAG 2 cut(s) 210, 252
EcoT14I CCWWGG 1 cut(s) 355
EcoT22I ATGCAT 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 355
Esp3I CGTCTC 1 cut(s) 87
FaeI CATG 2 cut(s) 117, 227
FaiI YATR 8 cut(s) 9, 50, 115, 149, 225, 281, 283, 285
FalI AAGNNNNNCTT 4 cut(s) 186, 218, 339, 371
FatI CATG 2 cut(s) 113, 223
FokI GGATG 1 cut(s) 280
GsuI CTGGAG 1 cut(s) 396
HaeIII GGCC 1 cut(s) 354
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 2 cut(s) 117, 227
HinfI GANTC 3 cut(s) 25, 52, 434
Hpy166II GTNNAC 2 cut(s) 144, 392
Hpy188I TCNGA 2 cut(s) 70, 108
Hpy188III TCNNGA 3 cut(s) 29, 216, 438
Hpy8I GTNNAC 2 cut(s) 144, 392
HpyCH4III ACNGT 1 cut(s) 200
HpyCH4IV ACGT 1 cut(s) 80
HpyCH4V TGCA 3 cut(s) 223, 323, 422
HpySE526I ACGT 1 cut(s) 80
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 2 cut(s) 117, 227
Kzo9I GATC 1 cut(s) 108
LpnPI CCDG 6 cut(s) 14, 201, 255, 360, 372, 432
LweI GCATC 2 cut(s) 61, 217
MaeII ACGT 1 cut(s) 80
MaeIII GTNAC 1 cut(s) 76
MalI GATC 1 cut(s) 110
MboI GATC 1 cut(s) 108
MboII GAAGA 7 cut(s) 182, 194, 203, 206, 245, 324, 361
MluCI AATT 1 cut(s) 268
MlyI GAGTC 1 cut(s) 46
MmeI TCCRAC 2 cut(s) 74, 393
MnlI CCTC 3 cut(s) 152, 300, 353
Mph1103I ATGCAT 1 cut(s) 225
MslI CAYNNNNRTG 1 cut(s) 69
Mva1269I GAATGC 1 cut(s) 225
NdeII GATC 1 cut(s) 108
NlaIII CATG 2 cut(s) 117, 227
NlaIV GGNNCC 1 cut(s) 417
NmuCI GTSAC 1 cut(s) 76
NsiI ATGCAT 1 cut(s) 225
PctI GAATGC 1 cut(s) 225
PfeI GAWTC 1 cut(s) 25
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 417
PspPI GGNCC 2 cut(s) 4, 96
PstI CTGCAG 1 cut(s) 424
RseI CAYNNNNRTG 1 cut(s) 69
Sau3AI GATC 1 cut(s) 108
Sau96I GGNCC 2 cut(s) 4, 96
SchI GAGTC 1 cut(s) 46
SetI ASST 4 cut(s) 83, 141, 388, 421
SfaNI GCATC 2 cut(s) 61, 217
SfcI CTRYAG 1 cut(s) 420
SinI GGWCC 2 cut(s) 4, 96
SmiMI CAYNNNNRTG 1 cut(s) 69
Sse9I AATT 1 cut(s) 268
SsiI CCGC 1 cut(s) 277
StyI CCWWGG 1 cut(s) 355
TaaI ACNGT 1 cut(s) 200
TaiI ACGT 1 cut(s) 83
TasI AATT 1 cut(s) 268
TfiI GAWTC 1 cut(s) 25
TscAI CASTG 2 cut(s) 193, 379
TseFI GTSAC 1 cut(s) 76
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 1 cut(s) 396
TspGWI ACGGA 1 cut(s) 388
TspRI CASTG 2 cut(s) 193, 379
VpaK11BI GGWCC 2 cut(s) 4, 96
ZraI GACGTC 1 cut(s) 81
Zsp2I ATGCAT 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.