Rmu_sc0000555.1_g000012

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000555.1
OG0000488
Physical Location & Seq
Reverse (-)
40574 .. 41770
1197 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000555.1_g000012.1.cds

Sequence Viewer

Length: 795 bp
atggaaggatccgtttatgcaagaagacctacttctgaaaccgtctgcaagttttgggtgatgtgcagatgcctcaagaaaaagtgtcgattcctacacgcttatccaaatcaaaagtttcttccattaatggaggagaagggaaaatctatggggaaagcatatgattctgttaatgttatggttgagaataacactgatacccataaagggaaagcggccaaagcagtctgcaagttctgggcagatgaaaagtgtgtaagacgcgaaggtgcccttatttgcacagttggttccgtggagatggcttttcttccttggcaaaattccaaggccataattgtgcttctggagagaagtagcaatctttattctcctgccaaagatgaaacagttagggtttgggactgcaatacagtcaaggcatggaatattgagtccaatgctgaatttaccctagctggacctattggtaaagtccatgccatggaagttgggaatgatatggaggcatgcaacattgaaaaaatctacactcacactgaagaacatggtcttcttgctctctctggaatgtatgatgttaaagataaaccattcctactttgctcatcaaaagacaattctgcctgcatatatgatttgccatcctttgataagaagggaagattatttgcaaaacgagaagttcgggctattcaagtgggccttggaggattattcttcattggggatgaaactgctggactttccgtgtggaagtggttggaacctgcagtcaaacaagagtcgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04120 map03040 map04120
Pfam Domains
Protein Families
WD40 zf-CCCH

Protein Analysis

264

Amino Acids

29.7

Weight (kDa)

8.41

Isoelectric Point (pI)

43.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000488)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25440 AT4G25440 AT4G25440 AT5G51980 AT5G51980
fragaria_vesca FvH4_2g11580 FvH4_3g29280 FvH4_4g05980 FvH4_7g28880 FvH4_7g28880
malus_domestica MD01G1195600.v1.1 MD02G1195200.v1.1 MD07G1262400.v1.1
prunus_persica Prupe.2G102200_v2.0.a1 Prupe.2G102200_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G288900_v2.0.a1
pyrus_communis pycom01g20620 pycom02g15900 pycom07g24140
rosa_chinensis RchiOBHm_Chr1g0376561 RchiOBHm_Chr3g0483051 RchiOBHm_Chr3g0483061 RchiOBHm_Chr3g0483601 RchiOBHm_Chr3g0483611 RchiOBHm_Chr4g0402321 RchiOBHm_Chr6g0270771
rosa_laevigata RLG00000009464 RLG00000009486 RLG00000013770 RLG00000023264 RLG00000023325 RLG00000026601 RLG00000035049
rosa_multiflora Rmu_co8110388.1_g000001 Rmu_co8419409.1_g000001 Rmu_sc0000555.1_g000012 Rmu_sc0000642.1_g000020 Rmu_sc0001308.1_g000010 Rmu_sc0002963.1_g000021 Rmu_sc0004788.1_g000012 Rmu_sc0005594.1_g000015 Rmu_sc0022770.1_g000001
rosa_roxburghii Rroxscaffold_4G00282000 Rroxscaffold_5G00341940 Rroxscaffold_5G00341950 Rroxscaffold_6G00398950 Rroxscaffold_7G00197610
rosa_rugosa Rorug01G0396500 Rorug03G0207400 Rorug03G0346000 Rorug04G0166800 Rorug06G0056400 Rorug06G0056500
rosa_samantha Rh1AG412700 Rh1BG372400 Rh1BG372600 Rh1CG386200 Rh1CG386500 Rh1DG403300 Rh1DG403500 Rh3AG255500 Rh3AG255600 Rh3BG292600 Rh3CG290200 Rh3DG278800 Rh3DG286100 Rh4AG075500 Rh4AG111600 Rh4BG071900 Rh4BG072100 Rh4BG231300 Rh4CG080200 Rh4CG080300 Rh4DG069300 Rh4DG069500 Rh6AG175700 Rh6BG178900 Rh6CG175200 Rh6DG167500
rosa_wichuraiana Rw1G036190 Rw3G023110 Rw4G006070 Rw6G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 781
AccB1I GGYRCC 1 cut(s) 272
AccB7I CCANNNNNTGG 1 cut(s) 487
AccII CGCG 1 cut(s) 267
AciI CCGC 1 cut(s) 218
AclWI GGATC 2 cut(s) 3, 16
AcoI YGGCCR 1 cut(s) 219
AcsI RAATTY 2 cut(s) 325, 449
AcuI CTGAAG 1 cut(s) 564
AfiI CCNNNNNNNGG 2 cut(s) 210, 487
AgsI TTSAA 2 cut(s) 524, 701
AluBI AGCT 1 cut(s) 461
AluI AGCT 1 cut(s) 461
AlwI GGATC 2 cut(s) 3, 16
AoxI GGCC 3 cut(s) 219, 333, 706
ApoI RAATTY 2 cut(s) 325, 449
AseI ATTAAT 1 cut(s) 128
AspS9I GGNCC 2 cut(s) 464, 706
AsuHPI GGTGA 1 cut(s) 70
AvaII GGWCC 1 cut(s) 464
BaeGI GKGCMC 1 cut(s) 277
BamHI GGATCC 1 cut(s) 8
BanI GGYRCC 1 cut(s) 272
BbsI GAAGAC 2 cut(s) 31, 548
BccI CCATC 2 cut(s) 298, 655
BfaI CTAG 1 cut(s) 458
BfmI CTRYAG 1 cut(s) 774
BfuAI ACCTGC 1 cut(s) 781
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
Bme18I GGWCC 1 cut(s) 464
BmgT120I GGNCC 2 cut(s) 464, 706
BmiI GGNNCC 4 cut(s) 10, 274, 295, 771
BmsI GCATC 1 cut(s) 59
BpiI GAAGAC 2 cut(s) 31, 548
BpmI CTGGAG 1 cut(s) 371
BpuEI CTTGAG 1 cut(s) 59
BsaJI CCNNGG 5 cut(s) 297, 317, 330, 486, 709
Bsc4I CCNNNNNNNGG 2 cut(s) 210, 487
BseDI CCNNGG 5 cut(s) 297, 317, 330, 486, 709
BseGI GGATG 2 cut(s) 647, 739
BseLI CCNNNNNNNGG 2 cut(s) 210, 487
BseRI GAGGAG 1 cut(s) 149
BseSI GKGCMC 1 cut(s) 277
BsgI GTGCAG 1 cut(s) 85
Bsh1236I CGCG 1 cut(s) 267
BshFI GGCC 3 cut(s) 221, 335, 708
BshNI GGYRCC 1 cut(s) 272
BslFI GGGAC 1 cut(s) 419
BslI CCNNNNNNNGG 2 cut(s) 210, 487
BsmFI GGGAC 1 cut(s) 419
BsnI GGCC 3 cut(s) 221, 335, 708
Bsp1286I GDGCHC 1 cut(s) 277
Bsp143I GATC 1 cut(s) 8
Bsp19I CCATGG 1 cut(s) 486
BspACI CCGC 1 cut(s) 218
BspANI GGCC 3 cut(s) 221, 335, 708
BspFNI CGCG 1 cut(s) 267
BspLI GGNNCC 4 cut(s) 10, 274, 295, 771
BspMAI CTGCAG 1 cut(s) 778
BspMI ACCTGC 1 cut(s) 781
BspPI GGATC 2 cut(s) 3, 16
BspT107I GGYRCC 1 cut(s) 272
BssECI CCNNGG 5 cut(s) 297, 317, 330, 486, 709
BssMI GATC 1 cut(s) 8
BssT1I CCWWGG 4 cut(s) 317, 330, 486, 709
Bst4CI ACNGT 4 cut(s) 43, 289, 394, 418
BstC8I GCNNGC 2 cut(s) 514, 631
BstDSI CCRYGG 2 cut(s) 297, 486
BstF5I GGATG 2 cut(s) 647, 739
BstFNI CGCG 1 cut(s) 267
BstKTI GATC 1 cut(s) 11
BstMBI GATC 1 cut(s) 8
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstNSI RCATGY 1 cut(s) 516
BstSFI CTRYAG 1 cut(s) 774
BstSLI GKGCMC 1 cut(s) 277
BstUI CGCG 1 cut(s) 267
BstV2I GAAGAC 2 cut(s) 31, 548
BstX2I RGATCY 1 cut(s) 8
BstYI RGATCY 1 cut(s) 8
BsuRI GGCC 3 cut(s) 221, 335, 708
BtgI CCRYGG 2 cut(s) 297, 486
BtsCI GGATG 2 cut(s) 647, 739
BtsIMutI CAGTG 2 cut(s) 195, 540
BveI ACCTGC 1 cut(s) 781
Cac8I GCNNGC 2 cut(s) 514, 631
Cfr13I GGNCC 2 cut(s) 464, 706
CseI GACGC 1 cut(s) 273
CviAII CATG 5 cut(s) 426, 482, 487, 513, 551
CviJI RGCY 6 cut(s) 221, 308, 335, 461, 695, 708
CviKI_1 RGCY 6 cut(s) 221, 308, 335, 461, 695, 708
DpnI GATC 1 cut(s) 10
DpnII GATC 1 cut(s) 8
EaeI YGGCCR 1 cut(s) 219
Eco130I CCWWGG 4 cut(s) 317, 330, 486, 709
Eco47I GGWCC 1 cut(s) 464
Eco57I CTGAAG 1 cut(s) 564
EcoT14I CCWWGG 4 cut(s) 317, 330, 486, 709
ErhI CCWWGG 4 cut(s) 317, 330, 486, 709
FaeI CATG 5 cut(s) 429, 485, 490, 516, 554
FalI AAGNNNNNCTT 6 cut(s) 16, 48, 261, 293, 693, 725
FaqI GGGAC 1 cut(s) 419
FatI CATG 5 cut(s) 425, 481, 486, 512, 550
FauNDI CATATG 1 cut(s) 163
Fnu4HI GCNGC 1 cut(s) 219
FokI GGATG 2 cut(s) 634, 746
Fsp4HI GCNGC 1 cut(s) 219
FspBI CTAG 1 cut(s) 458
GluI GCNGC 1 cut(s) 219
GsuI CTGGAG 1 cut(s) 371
HaeIII GGCC 3 cut(s) 221, 335, 708
HgaI GACGC 1 cut(s) 273
Hin1II CATG 5 cut(s) 429, 485, 490, 516, 554
HinfI GANTC 4 cut(s) 90, 167, 437, 788
HphI GGTGA 1 cut(s) 70
Hpy188I TCNGA 1 cut(s) 37
Hpy188III TCNNGA 4 cut(s) 76, 350, 570, 792
HpyAV CCTTC 3 cut(s) 133, 263, 655
HpyCH4III ACNGT 4 cut(s) 43, 289, 394, 418
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
Hsp92II CATG 5 cut(s) 429, 485, 490, 516, 554
Kzo9I GATC 1 cut(s) 8
LpnPI CCDG 8 cut(s) 226, 335, 390, 447, 555, 643, 729, 786
LweI GCATC 1 cut(s) 59
MaeI CTAG 1 cut(s) 458
MalI GATC 1 cut(s) 10
MboI GATC 1 cut(s) 8
MboII GAAGA 7 cut(s) 36, 113, 305, 548, 557, 678, 715
MflI RGATCY 1 cut(s) 8
MhlI GDGCHC 1 cut(s) 277
MluCI AATT 4 cut(s) 325, 339, 449, 622
MlyI GAGTC 1 cut(s) 446
MmeI TCCRAC 1 cut(s) 747
MnlI CCTC 4 cut(s) 83, 127, 502, 707
MseI TTAA 3 cut(s) 128, 174, 585
MslI CAYNNNNRTG 1 cut(s) 341
MvnI CGCG 1 cut(s) 267
MwoI GCNNNNNNNGC 1 cut(s) 224
NcoI CCATGG 1 cut(s) 486
NdeI CATATG 1 cut(s) 163
NdeII GATC 1 cut(s) 8
NlaIII CATG 5 cut(s) 429, 485, 490, 516, 554
NlaIV GGNNCC 4 cut(s) 10, 274, 295, 771
NspI RCATGY 1 cut(s) 516
PaeI GCATGC 1 cut(s) 516
PfeI GAWTC 2 cut(s) 90, 167
PflMI CCANNNNNTGG 1 cut(s) 487
PkrI GCNGC 1 cut(s) 220
PleI GAGTC 1 cut(s) 445
PpsI GAGTC 1 cut(s) 445
PshBI ATTAAT 1 cut(s) 128
PspN4I GGNNCC 4 cut(s) 10, 274, 295, 771
PspPI GGNCC 2 cut(s) 464, 706
PstI CTGCAG 1 cut(s) 778
PsuI RGATCY 1 cut(s) 8
RseI CAYNNNNRTG 1 cut(s) 341
SaqAI TTAA 3 cut(s) 128, 174, 585
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 1 cut(s) 8
Sau96I GGNCC 2 cut(s) 464, 706
SchI GAGTC 1 cut(s) 446
SduI GDGCHC 1 cut(s) 277
SetI ASST 5 cut(s) 31, 274, 463, 469, 775
SfaNI GCATC 1 cut(s) 59
SfcI CTRYAG 1 cut(s) 774
SinI GGWCC 1 cut(s) 464
SmiMI CAYNNNNRTG 1 cut(s) 341
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
SphI GCATGC 1 cut(s) 516
Sse9I AATT 4 cut(s) 325, 339, 449, 622
SsiI CCGC 1 cut(s) 218
SspI AATATT 1 cut(s) 433
SspMI CTAG 1 cut(s) 458
StyI CCWWGG 4 cut(s) 317, 330, 486, 709
TaaI ACNGT 4 cut(s) 43, 289, 394, 418
TaqI TCGA 1 cut(s) 88
TasI AATT 4 cut(s) 325, 339, 449, 622
TauI GCSGC 1 cut(s) 221
TfiI GAWTC 2 cut(s) 90, 167
Tru1I TTAA 3 cut(s) 128, 174, 585
Tru9I TTAA 3 cut(s) 128, 174, 585
TscAI CASTG 2 cut(s) 202, 547
TspDTI ATGAA 4 cut(s) 264, 402, 715, 750
TspGWI ACGGA 2 cut(s) 286, 742
TspRI CASTG 2 cut(s) 202, 547
Van91I CCANNNNNTGG 1 cut(s) 487
VpaK11BI GGWCC 1 cut(s) 464
VspI ATTAAT 1 cut(s) 128
XapI RAATTY 2 cut(s) 325, 449
XceI RCATGY 1 cut(s) 516
XspI CTAG 1 cut(s) 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.