Rh6AG175700

Zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000488
Physical Location & Seq
Forward (+)
28546343 .. 28549599
3257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG175700.1

Sequence Viewer

Length: 1425 bp
ATGGCCTTTAAGGCGGGAAAGAGGCCGGCGAATAGGTCAGATATATCGGTGTATTCTCGACCAGGACCAGGAGGAGGAGCTGTTTGCAAGTTCTTCCAGCAAGGAAGATGCACCAAGATAGAGTGTAGGTTCTCCCACGTTTTAGCACCAACTCCACTGACAAACCCGCGACCTTTGGTTTGGAACAAGGAGGAGACTATTACCAGAAGGGATAAAAACATAGAGAGCATTGTTTCGCAGAAGACCGTGGCTACTCCGAAGAGAATGCCTGGCCAGCAAAGCATGGCTACTCAGAAGAGCATTGTTACGCATAAGAGCATGCCTAGCCAGCAAAGCCTGGCTACCAAGAATAGCATTGCCACCCAGAAGAGCATCGTTACTCAGCAAAGCATCCCTACCCAGAAAAGCATTCCCACCCAGAAAAATAATGCCATTCTGAAGCCCCTAGAAAAGGTCTGCAATTTCTGGGCTAATGGAAAATGTATGAAAGGCGATAGATGCCCATACCTGCATTCTTGGTTCTGTGGAGATGGGTTCTCCATGTTGGCAAAACTCCAAGACCACAAGAAGACGGTCACTGGTATTGTGCTTCCCGAAGGATCTAGCAAGCTCTATTCAGCCAGTAAAGACGGAACAGTCAGAATTTGGGACTGCCATACTGGTCATTGTGGCAGTGTAATTAATCTTGGTGGTGAAGCTGGTTGTTTATTTAGCAAGGGTCCATGGGTTTTTGCGGGTGCCCCAAATGTTGTTGAGGCATGGAACATTCAGACAAATGCTGAGTTTAGCCTAAGTGCACCTGCTGCGCAAGTGCATGCCATGGAGGTTGGTAATGAAATGCTTTTCGCTGGGACACAGGAAGGTGTTATATTGGTGTGGAAAGATGGTCCCGAGGATAATCCATTTCAGCTTGCTGCACCTCTGGAAGGCCACACCGGTGCTGTGGTATGCTTAAAAGTTGAAGCTGACAGGCTTTACTCGGGTTCTGTGGACCATACTATTAGGGCATGGGACCTTAATATGCTGCAGTCTATTATGACACTAAATGCACATTCTGATGTGGTGACATCCCTTATTTGCTGGGGTCAATTTTTGATCTCATGCTCATTGGACTGCACAATAAAAGTCTGGGCTGAGAAAGGCAACTTGGAAGCAACATACACTCACACTCAAGAACATGGTCTTCTTGGTCTTTCCGGAGTGGCAGATGCAGAAGCTAAGCCAGTCCTGTTATGCTCATGTAAAGACAATTCTGTTTGGCTCTACGAACTGCCGTCATTTGCTGAAAGGGGCAGATTATTTGCAAAAAAAGAAGTTGGGGCGATTCAGGTAGGACCTGGGGGACTATTCTTCAGTGGGGATGGAACTGGTCTGCTCTCTGTTTGGAAGTGGGTGGAACCTGGCCTCAAAGTAGAGTCTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
WD40 zf-CCCH

Protein Analysis

474

Amino Acids

51.51

Weight (kDa)

8.68

Isoelectric Point (pI)

33.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf_CCCH_4 PF18345 153 - 171 9.5e-07 Zinc finger domain
Beta-prop_WDR3_1st PF25173 181 - 225 1.2e-07 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 181 - 227 5.4e-07 WDR5 beta-propeller domain
WD40_Prp19 PF24814 181 - 227 6.1e-06 Prp19 WD40 domain
WD40 PF00400 182 - 217 6.8e-06 WD domain, G-beta repeat
Beta-prop_THOC3 PF25174 183 - 358 8.6e-19 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 243 - 422 3.2e-19 WDR3 first beta-propeller domain
WD40_WDHD1_1st PF24817 245 - 462 3.5e-08 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 248 - 421 3.3e-16 WDR5 beta-propeller domain
WD40_CDC20-Fz PF24807 253 - 387 2.7e-09 CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd PF25047 274 - 389 1e-09 TEP-1 second beta-propeller
Beta-prop_SCAP PF24017 308 - 394 1e-05 SCAP Beta-propeller
Beta-prop_WDR3_2nd PF25172 310 - 379 8.2e-08 WDR3 second beta-propeller domain
WD40_Prp19 PF24814 314 - 462 1.6e-10 Prp19 WD40 domain
WD40 PF00400 343 - 377 9.8e-06 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000488)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25440 AT4G25440 AT4G25440 AT5G51980 AT5G51980
fragaria_vesca FvH4_2g11580 FvH4_3g29280 FvH4_4g05980 FvH4_7g28880 FvH4_7g28880
malus_domestica MD01G1195600.v1.1 MD02G1195200.v1.1 MD07G1262400.v1.1
prunus_persica Prupe.2G102200_v2.0.a1 Prupe.2G102200_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G288900_v2.0.a1
pyrus_communis pycom01g20620 pycom02g15900 pycom07g24140
rosa_chinensis RchiOBHm_Chr1g0376561 RchiOBHm_Chr3g0483051 RchiOBHm_Chr3g0483061 RchiOBHm_Chr3g0483601 RchiOBHm_Chr3g0483611 RchiOBHm_Chr4g0402321 RchiOBHm_Chr6g0270771
rosa_laevigata RLG00000009464 RLG00000009486 RLG00000013770 RLG00000023264 RLG00000023325 RLG00000026601 RLG00000035049
rosa_multiflora Rmu_co8110388.1_g000001 Rmu_co8419409.1_g000001 Rmu_sc0000555.1_g000012 Rmu_sc0000642.1_g000020 Rmu_sc0001308.1_g000010 Rmu_sc0002963.1_g000021 Rmu_sc0004788.1_g000012 Rmu_sc0005594.1_g000015 Rmu_sc0022770.1_g000001
rosa_roxburghii Rroxscaffold_4G00282000 Rroxscaffold_5G00341940 Rroxscaffold_5G00341950 Rroxscaffold_6G00398950 Rroxscaffold_7G00197610
rosa_rugosa Rorug01G0396500 Rorug03G0207400 Rorug03G0346000 Rorug04G0166800 Rorug06G0056400 Rorug06G0056500
rosa_samantha Rh1AG412700 Rh1BG372400 Rh1BG372600 Rh1CG386200 Rh1CG386500 Rh1DG403300 Rh1DG403500 Rh3AG255500 Rh3AG255600 Rh3BG292600 Rh3CG290200 Rh3DG278800 Rh3DG286100 Rh4AG075500 Rh4AG111600 Rh4BG071900 Rh4BG072100 Rh4BG231300 Rh4CG080200 Rh4CG080300 Rh4DG069300 Rh4DG069500 Rh6AG175700 Rh6BG178900 Rh6CG175200 Rh6DG167500
rosa_wichuraiana Rw1G036190 Rw3G023110 Rw4G006070 Rw6G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 808
AasI GACNNNNNNGTC 1 cut(s) 635
Acc16I TGCGCA 1 cut(s) 807
Acc36I ACCTGC 2 cut(s) 516, 808
AccB1I GGYRCC 1 cut(s) 737
AccII CGCG 1 cut(s) 169
AccIII TCCGGA 1 cut(s) 1196
AciI CCGC 3 cut(s) 14, 167, 734
AclWI GGATC 1 cut(s) 607
AcoI YGGCCR 1 cut(s) 271
AcsI RAATTY 1 cut(s) 642
AcuI CTGAAG 2 cut(s) 458, 1336
AfiI CCNNNNNNNGG 4 cut(s) 68, 74, 451, 926
AgeI ACCGGT 1 cut(s) 935
AgsI TTSAA 1 cut(s) 962
AjnI CCWGG 6 cut(s) 61, 67, 268, 336, 1336, 1399
AjuI GAANNNNNNNTTGG 2 cut(s) 1130, 1162
AleI CACNNNNGTG 1 cut(s) 936
AluBI AGCT 6 cut(s) 80, 610, 698, 910, 965, 1217
AluI AGCT 6 cut(s) 80, 610, 698, 910, 965, 1217
Alw21I GWGCWC 1 cut(s) 799
Alw26I GTCTC 1 cut(s) 188
Alw44I GTGCAC 1 cut(s) 795
AlwI GGATC 1 cut(s) 607
Ama87I CYCGRG 2 cut(s) 890, 979
Aor13HI TCCGGA 1 cut(s) 1196
AoxI GGCC 5 cut(s) 3, 23, 271, 928, 1402
ApaLI GTGCAC 1 cut(s) 795
ApeKI GCWGC 3 cut(s) 803, 914, 1024
ApoI RAATTY 1 cut(s) 642
ArsI GACNNNNNNTTYG 2 cut(s) 162, 194
AseI ATTAAT 1 cut(s) 681
AsiGI ACCGGT 1 cut(s) 935
AspLEI GCGC 1 cut(s) 808
AspS9I GGNCC 6 cut(s) 65, 719, 887, 991, 1012, 1334
AsuHPI GGTGA 2 cut(s) 704, 1075
AvaI CYCGRG 2 cut(s) 890, 979
AvaII GGWCC 6 cut(s) 65, 719, 887, 991, 1012, 1334
BaeGI GKGCMC 2 cut(s) 742, 799
BalI TGGCCA 1 cut(s) 273
BanI GGYRCC 1 cut(s) 737
BbsI GAAGAC 4 cut(s) 248, 575, 1175, 1410
Bbv12I GWGCWC 1 cut(s) 799
BbvI GCAGC 3 cut(s) 790, 901, 1011
BccI CCATC 3 cut(s) 524, 878, 1355
BceAI ACGGC 1 cut(s) 1258
BcgI CGANNNNNNTGC 2 cut(s) 247, 281
BciT130I CCWGG 6 cut(s) 63, 69, 270, 338, 1338, 1401
BcoDI GTCTC 1 cut(s) 188
BfaI CTAG 3 cut(s) 324, 446, 603
BfmI CTRYAG 1 cut(s) 1025
BfuAI ACCTGC 2 cut(s) 516, 808
BglI GCCNNNNNGGC 1 cut(s) 11
BisI GCNGC 3 cut(s) 804, 915, 1025
BlpI GCTNAGC 1 cut(s) 1218
BlsI GCNGC 3 cut(s) 805, 916, 1026
Bme1390I CCNGG 6 cut(s) 63, 69, 270, 338, 1338, 1401
Bme18I GGWCC 6 cut(s) 65, 719, 887, 991, 1012, 1334
BmeT110I CYCGRG 2 cut(s) 890, 979
BmgT120I GGNCC 6 cut(s) 65, 719, 887, 991, 1012, 1334
BmiI GGNNCC 5 cut(s) 720, 739, 889, 1013, 1398
BmrFI CCNGG 6 cut(s) 63, 69, 270, 338, 1338, 1401
BmsI GCATC 5 cut(s) 98, 381, 399, 488, 1198
BpiI GAAGAC 4 cut(s) 248, 575, 1175, 1410
Bpu1102I GCTNAGC 1 cut(s) 1218
BpuEI CTTGAG 1 cut(s) 1155
BsaJI CCNNGG 5 cut(s) 246, 722, 819, 891, 1337
BsaWI WCCGGW 2 cut(s) 935, 1196
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bsc4I CCNNNNNNNGG 4 cut(s) 68, 74, 451, 926
Bse118I RCCGGY 2 cut(s) 25, 935
Bse1I ACTGG 5 cut(s) 583, 621, 664, 1223, 1372
Bse3DI GCAATG 1 cut(s) 354
BseAI TCCGGA 1 cut(s) 1196
BseBI CCWGG 6 cut(s) 63, 69, 270, 338, 1338, 1401
BseDI CCNNGG 5 cut(s) 246, 722, 819, 891, 1337
BseGI GGATG 3 cut(s) 390, 1067, 1366
BseLI CCNNNNNNNGG 4 cut(s) 68, 74, 451, 926
BseMI GCAATG 1 cut(s) 354
BseMII CTCAG 4 cut(s) 305, 395, 771, 1125
BseNI ACTGG 5 cut(s) 583, 621, 664, 1223, 1372
BseRI GAGGAG 3 cut(s) 87, 90, 206
BseSI GKGCMC 2 cut(s) 742, 799
BseXI GCAGC 3 cut(s) 790, 901, 1011
BseYI CCCAGC 2 cut(s) 848, 1080
BsgI GTGCAG 2 cut(s) 900, 1099
Bsh1236I CGCG 1 cut(s) 169
BshFI GGCC 5 cut(s) 5, 25, 273, 930, 1404
BshNI GGYRCC 1 cut(s) 737
BshTI ACCGGT 1 cut(s) 935
BsiHKAI GWGCWC 1 cut(s) 799
BsiHKCI CYCGRG 2 cut(s) 890, 979
BsiSI CCGG 3 cut(s) 26, 936, 1197
BslFI GGGAC 5 cut(s) 662, 865, 873, 1025, 1356
BslI CCNNNNNNNGG 4 cut(s) 68, 74, 451, 926
BsmAI GTCTC 1 cut(s) 188
BsmFI GGGAC 5 cut(s) 662, 865, 873, 1025, 1356
BsmI GAATGC 3 cut(s) 270, 408, 511
BsnI GGCC 5 cut(s) 5, 25, 273, 930, 1404
BsoBI CYCGRG 2 cut(s) 890, 979
Bsp1286I GDGCHC 2 cut(s) 742, 799
Bsp13I TCCGGA 1 cut(s) 1196
Bsp143I GATC 2 cut(s) 599, 1095
Bsp1720I GCTNAGC 1 cut(s) 1218
Bsp19I CCATGG 2 cut(s) 722, 819
BspACI CCGC 3 cut(s) 14, 167, 734
BspANI GGCC 5 cut(s) 5, 25, 273, 930, 1404
BspCNI CTCAG 4 cut(s) 304, 394, 772, 1126
BspEI TCCGGA 1 cut(s) 1196
BspFNI CGCG 1 cut(s) 169
BspLI GGNNCC 5 cut(s) 720, 739, 889, 1013, 1398
BspMAI CTGCAG 1 cut(s) 1029
BspMI ACCTGC 2 cut(s) 516, 808
BspPI GGATC 1 cut(s) 607
BspQI GCTCTTC 2 cut(s) 290, 362
BspT107I GGYRCC 1 cut(s) 737
BsrDI GCAATG 1 cut(s) 354
BsrFI RCCGGY 2 cut(s) 25, 935
BsrI ACTGG 5 cut(s) 583, 621, 664, 1223, 1372
BssAI RCCGGY 2 cut(s) 25, 935
BssECI CCNNGG 5 cut(s) 246, 722, 819, 891, 1337
BssMI GATC 2 cut(s) 599, 1095
BssT1I CCWWGG 2 cut(s) 722, 819
Bst2UI CCWGG 6 cut(s) 63, 69, 270, 338, 1338, 1401
Bst4CI ACNGT 3 cut(s) 247, 574, 637
Bst6I CTCTTC 3 cut(s) 254, 290, 362
BstAPI GCANNNNNTGC 1 cut(s) 803
BstC8I GCNNGC 7 cut(s) 27, 275, 320, 329, 608, 816, 912
BstDEI CTNAG 6 cut(s) 291, 381, 780, 791, 1134, 1218
BstDSI CCRYGG 3 cut(s) 246, 722, 819
BstENI CCTNNNNNAGG 2 cut(s) 449, 924
BstF5I GGATG 3 cut(s) 390, 1067, 1366
BstFNI CGCG 1 cut(s) 169
BstHHI GCGC 1 cut(s) 808
BstKTI GATC 2 cut(s) 602, 1098
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 2 cut(s) 599, 1095
BstMWI GCNNNNNNNGC 8 cut(s) 11, 274, 279, 324, 328, 333, 498, 803
BstNI CCWGG 6 cut(s) 63, 69, 270, 338, 1338, 1401
BstNSI RCATGY 2 cut(s) 322, 818
BstSCI CCNGG 6 cut(s) 61, 67, 268, 336, 1336, 1399
BstSFI CTRYAG 1 cut(s) 1025
BstSLI GKGCMC 2 cut(s) 742, 799
BstUI CGCG 1 cut(s) 169
BstV1I GCAGC 3 cut(s) 790, 901, 1011
BstV2I GAAGAC 4 cut(s) 248, 575, 1175, 1410
BstX2I RGATCY 1 cut(s) 599
BstYI RGATCY 1 cut(s) 599
BsuRI GGCC 5 cut(s) 5, 25, 273, 930, 1404
BtgI CCRYGG 3 cut(s) 246, 722, 819
BtsCI GGATG 3 cut(s) 390, 1067, 1366
BtsI GCAGTG 1 cut(s) 679
BtsIMutI CAGTG 4 cut(s) 155, 576, 679, 1360
BveI ACCTGC 2 cut(s) 516, 808
Cac8I GCNNGC 7 cut(s) 27, 275, 320, 329, 608, 816, 912
CfoI GCGC 1 cut(s) 808
Cfr10I RCCGGY 2 cut(s) 25, 935
Cfr13I GGNCC 6 cut(s) 65, 719, 887, 991, 1012, 1334
CspAI ACCGGT 1 cut(s) 935
DdeI CTNAG 6 cut(s) 291, 381, 780, 791, 1134, 1218
DpnI GATC 2 cut(s) 601, 1097
DpnII GATC 2 cut(s) 599, 1095
DrdI GACNNNNNNGTC 1 cut(s) 635
DseDI GACNNNNNNGTC 1 cut(s) 635
EaeI YGGCCR 1 cut(s) 271
Eam1104I CTCTTC 3 cut(s) 254, 290, 362
EarI CTCTTC 3 cut(s) 254, 290, 362
Eco130I CCWWGG 2 cut(s) 722, 819
Eco47I GGWCC 6 cut(s) 65, 719, 887, 991, 1012, 1334
Eco57I CTGAAG 2 cut(s) 458, 1336
Eco88I CYCGRG 2 cut(s) 890, 979
EcoNI CCTNNNNNAGG 2 cut(s) 449, 924
EcoO109I RGGNCCY 2 cut(s) 1012, 1334
EcoRII CCWGG 6 cut(s) 61, 67, 268, 336, 1336, 1399
EcoT14I CCWWGG 2 cut(s) 722, 819
ErhI CCWWGG 2 cut(s) 722, 819
FaqI GGGAC 5 cut(s) 662, 865, 873, 1025, 1356
FauI CCCGC 3 cut(s) 7, 174, 727
Fnu4HI GCNGC 3 cut(s) 804, 915, 1025
FokI GGATG 3 cut(s) 377, 1054, 1373
Fsp4HI GCNGC 3 cut(s) 804, 915, 1025
FspBI CTAG 3 cut(s) 324, 446, 603
FspI TGCGCA 1 cut(s) 807
GlaI GCGC 1 cut(s) 807
GluI GCNGC 3 cut(s) 804, 915, 1025
GsaI CCCAGC 2 cut(s) 852, 1084
HaeIII GGCC 5 cut(s) 5, 25, 273, 930, 1404
HapII CCGG 3 cut(s) 26, 936, 1197
HhaI GCGC 1 cut(s) 808
Hin6I GCGC 1 cut(s) 806
HinP1I GCGC 1 cut(s) 806
HinfI GANTC 2 cut(s) 1324, 1415
HpaII CCGG 3 cut(s) 26, 936, 1197
HphI GGTGA 2 cut(s) 704, 1075
Hpy166II GTNNAC 2 cut(s) 797, 991
Hpy188I TCNGA 7 cut(s) 40, 258, 294, 438, 641, 771, 1057
Hpy188III TCNNGA 6 cut(s) 57, 593, 890, 923, 1172, 1197
Hpy8I GTNNAC 2 cut(s) 797, 991
HpyAV CCTTC 4 cut(s) 201, 590, 854, 920
HpyCH4III ACNGT 3 cut(s) 247, 574, 637
HpyCH4IV ACGT 1 cut(s) 138
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 274, 279, 324, 328, 333, 498, 803
HpyF3I CTNAG 6 cut(s) 291, 381, 780, 791, 1134, 1218
HpySE526I ACGT 1 cut(s) 138
HspAI GCGC 1 cut(s) 806
Kpn2I TCCGGA 1 cut(s) 1196
KroI GCCGGC 1 cut(s) 25
KroNI GCCGGC 1 cut(s) 27
Kzo9I GATC 2 cut(s) 599, 1095
LguI GCTCTTC 2 cut(s) 290, 362
LmnI GCTCC 1 cut(s) 77
Lsp1109I GCAGC 3 cut(s) 790, 901, 1011
LweI GCATC 5 cut(s) 98, 381, 399, 488, 1198
MaeI CTAG 3 cut(s) 324, 446, 603
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 4 cut(s) 304, 376, 574, 1063
MalI GATC 2 cut(s) 601, 1097
MboI GATC 2 cut(s) 599, 1095
MflI RGATCY 1 cut(s) 599
MhlI GDGCHC 2 cut(s) 742, 799
MlsI TGGCCA 1 cut(s) 273
MluCI AATT 5 cut(s) 460, 642, 678, 1088, 1249
MluNI TGGCCA 1 cut(s) 273
MlyI GAGTC 1 cut(s) 1424
MnlI CCTC 9 cut(s) 15, 65, 68, 184, 748, 817, 886, 930, 1415
Mox20I TGGCCA 1 cut(s) 273
MroI TCCGGA 1 cut(s) 1196
MroNI GCCGGC 1 cut(s) 25
MscI TGGCCA 1 cut(s) 273
MseI TTAA 4 cut(s) 9, 681, 953, 1017
MslI CAYNNNNRTG 2 cut(s) 936, 1056
Msp20I TGGCCA 1 cut(s) 273
MspI CCGG 3 cut(s) 26, 936, 1197
MspR9I CCNGG 6 cut(s) 63, 69, 270, 338, 1338, 1401
Mva1269I GAATGC 3 cut(s) 270, 408, 511
MvaI CCWGG 6 cut(s) 63, 69, 270, 338, 1338, 1401
MvnI CGCG 1 cut(s) 169
MwoI GCNNNNNNNGC 8 cut(s) 11, 274, 279, 324, 328, 333, 498, 803
NaeI GCCGGC 1 cut(s) 27
NcoI CCATGG 2 cut(s) 722, 819
NdeII GATC 2 cut(s) 599, 1095
NgoMIV GCCGGC 1 cut(s) 25
NlaIV GGNNCC 5 cut(s) 720, 739, 889, 1013, 1398
NmuCI GTSAC 2 cut(s) 574, 1063
NsbI TGCGCA 1 cut(s) 807
NspI RCATGY 2 cut(s) 322, 818
OliI CACNNNNGTG 1 cut(s) 936
PaeI GCATGC 2 cut(s) 322, 818
PaqCI CACCTGC 1 cut(s) 808
PciSI GCTCTTC 2 cut(s) 290, 362
PctI GAATGC 3 cut(s) 270, 408, 511
PdiI GCCGGC 1 cut(s) 27
PfeI GAWTC 1 cut(s) 1324
PinAI ACCGGT 1 cut(s) 935
PkrI GCNGC 3 cut(s) 805, 916, 1026
PleI GAGTC 1 cut(s) 1423
PpsI GAGTC 1 cut(s) 1423
PpuMI RGGWCCY 2 cut(s) 1012, 1334
PshBI ATTAAT 1 cut(s) 681
Psp5II RGGWCCY 2 cut(s) 1012, 1334
Psp6I CCWGG 6 cut(s) 61, 67, 268, 336, 1336, 1399
PspFI CCCAGC 2 cut(s) 848, 1080
PspGI CCWGG 6 cut(s) 61, 67, 268, 336, 1336, 1399
PspN4I GGNNCC 5 cut(s) 720, 739, 889, 1013, 1398
PspPI GGNCC 6 cut(s) 65, 719, 887, 991, 1012, 1334
PspPPI RGGWCCY 2 cut(s) 1012, 1334
PstI CTGCAG 1 cut(s) 1029
PsuI RGATCY 1 cut(s) 599
RseI CAYNNNNRTG 2 cut(s) 936, 1056
SapI GCTCTTC 2 cut(s) 290, 362
SaqAI TTAA 4 cut(s) 9, 681, 953, 1017
SatI GCNGC 3 cut(s) 804, 915, 1025
Sau3AI GATC 2 cut(s) 599, 1095
Sau96I GGNCC 6 cut(s) 65, 719, 887, 991, 1012, 1334
SchI GAGTC 1 cut(s) 1424
ScrFI CCNGG 6 cut(s) 63, 69, 270, 338, 1338, 1401
SduI GDGCHC 2 cut(s) 742, 799
SfaNI GCATC 5 cut(s) 98, 381, 399, 488, 1198
SfcI CTRYAG 1 cut(s) 1025
SgrAI CRCCGGYG 1 cut(s) 935
SinI GGWCC 6 cut(s) 65, 719, 887, 991, 1012, 1334
SmiMI CAYNNNNRTG 2 cut(s) 936, 1056
SmlI CTYRAG 1 cut(s) 1170
SmoI CTYRAG 1 cut(s) 1170
SphI GCATGC 2 cut(s) 322, 818
Sse9I AATT 5 cut(s) 460, 642, 678, 1088, 1249
SsiI CCGC 3 cut(s) 14, 167, 734
SspMI CTAG 3 cut(s) 324, 446, 603
StyD4I CCNGG 6 cut(s) 61, 67, 268, 336, 1336, 1399
StyI CCWWGG 2 cut(s) 722, 819
TaaI ACNGT 3 cut(s) 247, 574, 637
TaiI ACGT 1 cut(s) 141
TaqI TCGA 1 cut(s) 58
TasI AATT 5 cut(s) 460, 642, 678, 1088, 1249
TfiI GAWTC 1 cut(s) 1324
Tru1I TTAA 4 cut(s) 9, 681, 953, 1017
Tru9I TTAA 4 cut(s) 9, 681, 953, 1017
TscAI CASTG 4 cut(s) 162, 583, 679, 1360
TseFI GTSAC 2 cut(s) 574, 1063
TseI GCWGC 3 cut(s) 803, 914, 1024
Tsp45I GTSAC 2 cut(s) 574, 1063
TspDTI ATGAA 3 cut(s) 500, 849, 1410
TspGWI ACGGA 1 cut(s) 645
TspRI CASTG 4 cut(s) 162, 583, 679, 1360
VneI GTGCAC 1 cut(s) 795
VpaK11BI GGWCC 6 cut(s) 65, 719, 887, 991, 1012, 1334
VspI ATTAAT 1 cut(s) 681
XagI CCTNNNNNAGG 2 cut(s) 449, 924
XapI RAATTY 1 cut(s) 642
XceI RCATGY 2 cut(s) 322, 818
XspI CTAG 3 cut(s) 324, 446, 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.