Rh3AG255600

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000488
Physical Location & Seq
Forward (+)
27946401 .. 27954322
7922 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG255600.1

Sequence Viewer

Length: 342 bp
ATGGAAGTTGGGAATGATATGGCATGGACTATGTGTAAAGGAGGCAACATTGAAGGAATCTACACTCACATTGAAGAAGACGATCTTCTTGCTCTCTCTGGAATGCATGGTACTGAAGATAAACCAGTCCTACTTTGCTCATCAAAAGACAATTCTATCCGCATATATGATTTGCCATCCTTTGATGAGAAGGGAAGATTATTTGACAAACGAGAAGTTCGGGCTATTCAAACTTCCAATGTAATGTTAAGAGAAGAGTTCCACCAAGAACAATTAAAGCTATCTATTCATTTTGGCAAAACAAAGAACATCTTCATGGAAAAGTATATTGTGAGTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04120 map03040 map04120
Pfam Domains
Protein Families
WD40 zf-CCCH

Protein Analysis

113

Amino Acids

13.03

Weight (kDa)

5.32

Isoelectric Point (pI)

53.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000488)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25440 AT4G25440 AT4G25440 AT5G51980 AT5G51980
fragaria_vesca FvH4_2g11580 FvH4_3g29280 FvH4_4g05980 FvH4_7g28880 FvH4_7g28880
malus_domestica MD01G1195600.v1.1 MD02G1195200.v1.1 MD07G1262400.v1.1
prunus_persica Prupe.2G102200_v2.0.a1 Prupe.2G102200_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G288900_v2.0.a1
pyrus_communis pycom01g20620 pycom02g15900 pycom07g24140
rosa_chinensis RchiOBHm_Chr1g0376561 RchiOBHm_Chr3g0483051 RchiOBHm_Chr3g0483061 RchiOBHm_Chr3g0483601 RchiOBHm_Chr3g0483611 RchiOBHm_Chr4g0402321 RchiOBHm_Chr6g0270771
rosa_laevigata RLG00000009464 RLG00000009486 RLG00000013770 RLG00000023264 RLG00000023325 RLG00000026601 RLG00000035049
rosa_multiflora Rmu_co8110388.1_g000001 Rmu_co8419409.1_g000001 Rmu_sc0000555.1_g000012 Rmu_sc0000642.1_g000020 Rmu_sc0001308.1_g000010 Rmu_sc0002963.1_g000021 Rmu_sc0004788.1_g000012 Rmu_sc0005594.1_g000015 Rmu_sc0022770.1_g000001
rosa_roxburghii Rroxscaffold_4G00282000 Rroxscaffold_5G00341940 Rroxscaffold_5G00341950 Rroxscaffold_6G00398950 Rroxscaffold_7G00197610
rosa_rugosa Rorug01G0396500 Rorug03G0207400 Rorug03G0346000 Rorug04G0166800 Rorug06G0056400 Rorug06G0056500
rosa_samantha Rh1AG412700 Rh1BG372400 Rh1BG372600 Rh1CG386200 Rh1CG386500 Rh1DG403300 Rh1DG403500 Rh3AG255500 Rh3AG255600 Rh3BG292600 Rh3CG290200 Rh3DG278800 Rh3DG286100 Rh4AG075500 Rh4AG111600 Rh4BG071900 Rh4BG072100 Rh4BG231300 Rh4CG080200 Rh4CG080300 Rh4DG069300 Rh4DG069500 Rh6AG175700 Rh6BG178900 Rh6CG175200 Rh6DG167500
rosa_wichuraiana Rw1G036190 Rw3G023110 Rw4G006070 Rw6G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 160
AcuI CTGAAG 1 cut(s) 135
AfaI GTAC 1 cut(s) 112
AgsI TTSAA 3 cut(s) 53, 74, 230
AluBI AGCT 1 cut(s) 280
AluI AGCT 1 cut(s) 280
Asp700I GAANNNNTTC 1 cut(s) 311
BbsI GAAGAC 1 cut(s) 84
BccI CCATC 1 cut(s) 184
BcgI CGANNNNNNTGC 2 cut(s) 71, 105
BpiI GAAGAC 1 cut(s) 84
Bse1I ACTGG 1 cut(s) 125
BseGI GGATG 1 cut(s) 176
BseNI ACTGG 1 cut(s) 125
BsmI GAATGC 1 cut(s) 108
Bsp143I GATC 1 cut(s) 82
BspACI CCGC 1 cut(s) 160
BsrI ACTGG 1 cut(s) 125
BssMI GATC 1 cut(s) 82
Bst6I CTCTTC 1 cut(s) 249
BstF5I GGATG 1 cut(s) 176
BstKTI GATC 1 cut(s) 85
BstMBI GATC 1 cut(s) 82
BstV2I GAAGAC 1 cut(s) 84
BtsCI GGATG 1 cut(s) 176
Csp6I GTAC 1 cut(s) 111
CviAII CATG 3 cut(s) 24, 107, 316
CviJI RGCY 2 cut(s) 224, 280
CviKI_1 RGCY 2 cut(s) 224, 280
CviQI GTAC 1 cut(s) 111
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Eco57I CTGAAG 1 cut(s) 135
EcoT22I ATGCAT 1 cut(s) 108
FaeI CATG 3 cut(s) 27, 110, 319
FalI AAGNNNNNCTT 4 cut(s) 69, 101, 296, 328
FatI CATG 3 cut(s) 23, 106, 315
FokI GGATG 1 cut(s) 163
Hin1II CATG 3 cut(s) 27, 110, 319
HinfI GANTC 2 cut(s) 57, 334
Hpy188III TCNNGA 1 cut(s) 99
HpyAV CCTTC 2 cut(s) 47, 184
HpyCH4V TGCA 1 cut(s) 106
Hsp92II CATG 3 cut(s) 27, 110, 319
Kzo9I GATC 1 cut(s) 82
LpnPI CCDG 2 cut(s) 84, 138
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MboII GAAGA 7 cut(s) 77, 86, 89, 128, 207, 266, 304
MluCI AATT 2 cut(s) 151, 272
MnlI CCTC 1 cut(s) 35
Mph1103I ATGCAT 1 cut(s) 108
MroXI GAANNNNTTC 1 cut(s) 311
MseI TTAA 2 cut(s) 248, 275
MslI CAYNNNNRTG 1 cut(s) 314
Mva1269I GAATGC 1 cut(s) 108
NdeII GATC 1 cut(s) 82
NlaIII CATG 3 cut(s) 27, 110, 319
NsiI ATGCAT 1 cut(s) 108
PctI GAATGC 1 cut(s) 108
PdmI GAANNNNTTC 1 cut(s) 311
PfeI GAWTC 1 cut(s) 57
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
RseI CAYNNNNRTG 1 cut(s) 314
SaqAI TTAA 2 cut(s) 248, 275
Sau3AI GATC 1 cut(s) 82
SetI ASST 1 cut(s) 282
SgeI CNNG 9 cut(s) 36, 101, 111, 119, 137, 224, 233, 278, 328
SmiMI CAYNNNNRTG 1 cut(s) 314
Sse9I AATT 2 cut(s) 151, 272
SsiI CCGC 1 cut(s) 160
TasI AATT 2 cut(s) 151, 272
TfiI GAWTC 1 cut(s) 57
Tru1I TTAA 2 cut(s) 248, 275
Tru9I TTAA 2 cut(s) 248, 275
TspDTI ATGAA 2 cut(s) 278, 304
XmnI GAANNNNTTC 1 cut(s) 311
Zsp2I ATGCAT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.