FvH4_2g11580

Zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000488
Physical Location & Seq
Forward (+)
10117470 .. 10119150
1681 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g11580.t1

Sequence Viewer

Length: 846 bp
ATGGTCACTGGTATTGTGCTTCCCGAAGGATCTAGCAAGCTCTATTCAACCAGTAAAGATGGAACAGTTAGAGTTTGGGACTGCCATACTGGTCATTGTGGCAGTGTACTTAATCTTGGTGGTGAAGCAGGTTGTTTATTTAGCAAGGGTCCATGGGTTTTCGCAGGTGCTCCAAATGTTGTTGAGGCATGGAACATTCAGACAAATGCTGAGTTTAGCCTAAGTGCACCTGCTGGGCAAGTGCATGCCATGGAGGTTGGTAACGAAATGCTCTTTGCTGGGACACAGGAAGGCATTATAGTGGTGTGGACAGATGGTCCTGAGGATAATCCATTTCAGCTTGCTGCACCACTGGAAGGCCACACTGGTGCTGTGTTATGCTTAAAAGTTGAAGCCGACAGGCTTTACTCGGGTTCTGTGGACCATACTATAAGGGTGTGGGCACTTAATACTCTTCAGTGTATTATGACACTAGATACGCATTCTGATGCTGTGACGTCTCTTATTTGCTGGGGTCAGTTTCTGATCTCATGCTCGCTGGACTGCACAATAAAAGTCTGGGCTGAGAAAGGCGGCAACTTGGAAGCTACGTACACCCACACTCAAGAACATGGTCTTCTTGGTCTTTCTGGAATGACAGATGCAGAAGCTAAGCCAGTCCTGTTATGCTCGTGTAAAGACAATTCTGTTTGGCTCTATGAACTGCCATCATTTGCTGAAAGGGGCAGATTATTTGCAAAAGAAGAAGTTGGGGCAATTCAGGTAGGACCTGGTGGACTATTCTTCAGTGGGGATGGAACTGGTCGCCTTTCTGTTGGAAGTGGGTGGAACCTGGTCTCAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
WD40 zf-CCCH

Protein Analysis

282

Amino Acids

29.91

Weight (kDa)

4.87

Isoelectric Point (pI)

15.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 8 - 198 1.3e-20 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 53 - 233 1.3e-19 WDR3 first beta-propeller domain
WD40_CDC20-Fz PF24807 59 - 201 8.4e-10 CDC20/Fizzy WD40 domain
WD40_Prp19 PF24814 88 - 168 2e-07 Prp19 WD40 domain
Beta-prop_TEP1_2nd PF25047 88 - 201 2.2e-09 TEP-1 second beta-propeller
Beta-prop_WDR5 PF25175 89 - 232 6.2e-18 WDR5 beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 90 - 237 5e-06 MABP1/WDR62 second WD40 domain
Beta-prop_WDR3_2nd PF25172 121 - 189 3.4e-07 WDR3 second beta-propeller domain
Beta-prop_SCAP PF24017 121 - 189 1.1e-07 SCAP Beta-propeller
WD40 PF00400 153 - 187 8.6e-07 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000488)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25440 AT4G25440 AT4G25440 AT5G51980 AT5G51980
fragaria_vesca FvH4_2g11580 FvH4_3g29280 FvH4_4g05980 FvH4_7g28880 FvH4_7g28880
malus_domestica MD01G1195600.v1.1 MD02G1195200.v1.1 MD07G1262400.v1.1
prunus_persica Prupe.2G102200_v2.0.a1 Prupe.2G102200_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G288900_v2.0.a1
pyrus_communis pycom01g20620 pycom02g15900 pycom07g24140
rosa_chinensis RchiOBHm_Chr1g0376561 RchiOBHm_Chr3g0483051 RchiOBHm_Chr3g0483061 RchiOBHm_Chr3g0483601 RchiOBHm_Chr3g0483611 RchiOBHm_Chr4g0402321 RchiOBHm_Chr6g0270771
rosa_laevigata RLG00000009464 RLG00000009486 RLG00000013770 RLG00000023264 RLG00000023325 RLG00000026601 RLG00000035049
rosa_multiflora Rmu_co8110388.1_g000001 Rmu_co8419409.1_g000001 Rmu_sc0000555.1_g000012 Rmu_sc0000642.1_g000020 Rmu_sc0001308.1_g000010 Rmu_sc0002963.1_g000021 Rmu_sc0004788.1_g000012 Rmu_sc0005594.1_g000015 Rmu_sc0022770.1_g000001
rosa_roxburghii Rroxscaffold_4G00282000 Rroxscaffold_5G00341940 Rroxscaffold_5G00341950 Rroxscaffold_6G00398950 Rroxscaffold_7G00197610
rosa_rugosa Rorug01G0396500 Rorug03G0207400 Rorug03G0346000 Rorug04G0166800 Rorug06G0056400 Rorug06G0056500
rosa_samantha Rh1AG412700 Rh1BG372400 Rh1BG372600 Rh1CG386200 Rh1CG386500 Rh1DG403300 Rh1DG403500 Rh3AG255500 Rh3AG255600 Rh3BG292600 Rh3CG290200 Rh3DG278800 Rh3DG286100 Rh4AG075500 Rh4AG111600 Rh4BG071900 Rh4BG072100 Rh4BG231300 Rh4CG080200 Rh4CG080300 Rh4DG069300 Rh4DG069500 Rh6AG175700 Rh6BG178900 Rh6CG175200 Rh6DG167500
rosa_wichuraiana Rw1G036190 Rw3G023110 Rw4G006070 Rw6G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 155, 238
AatII GACGTC 1 cut(s) 500
Acc36I ACCTGC 3 cut(s) 119, 155, 238
AciI CCGC 1 cut(s) 573
AclWI GGATC 1 cut(s) 37
AcuI CTGAAG 2 cut(s) 440, 769
AcyI GRCGYC 1 cut(s) 497
AfaI GTAC 2 cut(s) 108, 593
AfiI CCNNNNNNNGG 1 cut(s) 356
AgsI TTSAA 2 cut(s) 48, 392
AhdI GACNNNNNGTC 1 cut(s) 315
AjnI CCWGG 2 cut(s) 769, 831
AleI CACNNNNGTG 1 cut(s) 366
AluBI AGCT 4 cut(s) 40, 340, 587, 650
AluI AGCT 4 cut(s) 40, 340, 587, 650
Alw21I GWGCWC 2 cut(s) 172, 229
Alw26I GTCTC 2 cut(s) 504, 841
Alw44I GTGCAC 1 cut(s) 225
AlwI GGATC 1 cut(s) 37
AlwNI CAGNNNCTG 1 cut(s) 523
Ama87I CYCGRG 1 cut(s) 409
AoxI GGCC 1 cut(s) 358
ApaLI GTGCAC 1 cut(s) 225
ApeKI GCWGC 1 cut(s) 344
AspS9I GGNCC 4 cut(s) 149, 317, 421, 767
AsuHPI GGTGA 1 cut(s) 134
AvaI CYCGRG 1 cut(s) 409
AvaII GGWCC 4 cut(s) 149, 317, 421, 767
AxyI CCTNAGG 1 cut(s) 321
BaeGI GKGCMC 2 cut(s) 229, 445
BauI CACGAG 1 cut(s) 670
BbsI GAAGAC 1 cut(s) 608
Bbv12I GWGCWC 2 cut(s) 172, 229
BbvI GCAGC 1 cut(s) 331
BccI CCATC 4 cut(s) 53, 308, 715, 788
BciT130I CCWGG 2 cut(s) 771, 833
BcoDI GTCTC 2 cut(s) 504, 841
BfaI CTAG 2 cut(s) 33, 473
BfuAI ACCTGC 3 cut(s) 119, 155, 238
BisI GCNGC 2 cut(s) 345, 574
BlpI GCTNAGC 1 cut(s) 651
BlsI GCNGC 2 cut(s) 346, 575
Bme1390I CCNGG 2 cut(s) 771, 833
Bme18I GGWCC 4 cut(s) 149, 317, 421, 767
BmeRI GACNNNNNGTC 1 cut(s) 315
BmeT110I CYCGRG 1 cut(s) 409
BmgT120I GGNCC 4 cut(s) 149, 317, 421, 767
BmiI GGNNCC 2 cut(s) 150, 830
BmrFI CCNGG 2 cut(s) 771, 833
BmsI GCATC 2 cut(s) 478, 631
BpiI GAAGAC 1 cut(s) 608
Bpu1102I GCTNAGC 1 cut(s) 651
BpuEI CTTGAG 1 cut(s) 588
BsaAI YACGTR 1 cut(s) 591
BsaHI GRCGYC 1 cut(s) 497
BsaI GGTCTC 1 cut(s) 841
BsaJI CCNNGG 2 cut(s) 152, 249
Bsc4I CCNNNNNNNGG 1 cut(s) 356
Bse1I ACTGG 7 cut(s) 13, 51, 94, 357, 370, 656, 805
Bse21I CCTNAGG 1 cut(s) 321
BseBI CCWGG 2 cut(s) 771, 833
BseDI CCNNGG 2 cut(s) 152, 249
BseGI GGATG 1 cut(s) 799
BseLI CCNNNNNNNGG 1 cut(s) 356
BseMII CTCAG 3 cut(s) 201, 312, 555
BseNI ACTGG 7 cut(s) 13, 51, 94, 357, 370, 656, 805
BseSI GKGCMC 2 cut(s) 229, 445
BseXI GCAGC 1 cut(s) 331
BseYI CCCAGC 3 cut(s) 233, 278, 510
BsgI GTGCAG 2 cut(s) 330, 529
BshFI GGCC 1 cut(s) 360
BsiHKAI GWGCWC 2 cut(s) 172, 229
BsiHKCI CYCGRG 1 cut(s) 409
BslFI GGGAC 2 cut(s) 92, 295
BslI CCNNNNNNNGG 1 cut(s) 356
BsmAI GTCTC 2 cut(s) 504, 841
BsmBI CGTCTC 1 cut(s) 504
BsmFI GGGAC 2 cut(s) 92, 295
BsmI GAATGC 1 cut(s) 481
BsnI GGCC 1 cut(s) 360
Bso31I GGTCTC 1 cut(s) 841
BsoBI CYCGRG 1 cut(s) 409
Bsp1286I GDGCHC 3 cut(s) 172, 229, 445
Bsp143I GATC 2 cut(s) 29, 525
Bsp1720I GCTNAGC 1 cut(s) 651
Bsp19I CCATGG 2 cut(s) 152, 249
BspACI CCGC 1 cut(s) 573
BspANI GGCC 1 cut(s) 360
BspCNI CTCAG 3 cut(s) 202, 313, 556
BspLI GGNNCC 2 cut(s) 150, 830
BspMI ACCTGC 3 cut(s) 119, 155, 238
BspPI GGATC 1 cut(s) 37
BspTNI GGTCTC 1 cut(s) 841
BsrI ACTGG 7 cut(s) 13, 51, 94, 357, 370, 656, 805
BssECI CCNNGG 2 cut(s) 152, 249
BssMI GATC 2 cut(s) 29, 525
BssNI GRCGYC 1 cut(s) 497
BssSI CACGAG 1 cut(s) 670
BssT1I CCWWGG 2 cut(s) 152, 249
Bst2BI CACGAG 1 cut(s) 670
Bst2UI CCWGG 2 cut(s) 771, 833
Bst4CI ACNGT 1 cut(s) 67
Bst6I CTCTTC 1 cut(s) 459
BstACI GRCGYC 1 cut(s) 497
BstBAI YACGTR 1 cut(s) 591
BstC8I GCNNGC 4 cut(s) 38, 246, 342, 536
BstDEI CTNAG 5 cut(s) 210, 221, 321, 564, 651
BstDSI CCRYGG 2 cut(s) 152, 249
BstF5I GGATG 1 cut(s) 799
BstKTI GATC 2 cut(s) 32, 528
BstMAI GTCTC 2 cut(s) 504, 841
BstMBI GATC 2 cut(s) 29, 525
BstNI CCWGG 2 cut(s) 771, 833
BstNSI RCATGY 1 cut(s) 248
BstSCI CCNGG 2 cut(s) 769, 831
BstSLI GKGCMC 2 cut(s) 229, 445
BstSNI TACGTA 1 cut(s) 591
BstV1I GCAGC 1 cut(s) 331
BstV2I GAAGAC 1 cut(s) 608
BstX2I RGATCY 1 cut(s) 29
BstYI RGATCY 1 cut(s) 29
Bsu36I CCTNAGG 1 cut(s) 321
BsuRI GGCC 1 cut(s) 360
BtgI CCRYGG 2 cut(s) 152, 249
BtsCI GGATG 1 cut(s) 799
BtsI GCAGTG 1 cut(s) 109
BtsIMutI CAGTG 6 cut(s) 6, 109, 350, 363, 464, 793
BveI ACCTGC 3 cut(s) 119, 155, 238
Cac8I GCNNGC 4 cut(s) 38, 246, 342, 536
CaiI CAGNNNCTG 1 cut(s) 523
Cfr13I GGNCC 4 cut(s) 149, 317, 421, 767
CsiI ACCWGGT 2 cut(s) 769, 831
Csp6I GTAC 2 cut(s) 107, 592
CviAII CATG 6 cut(s) 153, 189, 245, 250, 531, 611
CviQI GTAC 2 cut(s) 107, 592
DdeI CTNAG 5 cut(s) 210, 221, 321, 564, 651
DpnI GATC 2 cut(s) 31, 527
DpnII GATC 2 cut(s) 29, 525
DriI GACNNNNNGTC 1 cut(s) 315
Eam1104I CTCTTC 1 cut(s) 459
Eam1105I GACNNNNNGTC 1 cut(s) 315
EarI CTCTTC 1 cut(s) 459
Eco105I TACGTA 1 cut(s) 591
Eco130I CCWWGG 2 cut(s) 152, 249
Eco31I GGTCTC 1 cut(s) 841
Eco47I GGWCC 4 cut(s) 149, 317, 421, 767
Eco57I CTGAAG 2 cut(s) 440, 769
Eco81I CCTNAGG 1 cut(s) 321
Eco88I CYCGRG 1 cut(s) 409
EcoO109I RGGNCCY 1 cut(s) 767
EcoRII CCWGG 2 cut(s) 769, 831
EcoT14I CCWWGG 2 cut(s) 152, 249
ErhI CCWWGG 2 cut(s) 152, 249
Esp3I CGTCTC 1 cut(s) 504
FaeI CATG 6 cut(s) 156, 192, 248, 253, 534, 614
FaqI GGGAC 2 cut(s) 92, 295
FatI CATG 6 cut(s) 152, 188, 244, 249, 530, 610
Fnu4HI GCNGC 2 cut(s) 345, 574
FokI GGATG 1 cut(s) 806
Fsp4HI GCNGC 2 cut(s) 345, 574
FspBI CTAG 2 cut(s) 33, 473
GluI GCNGC 2 cut(s) 345, 574
GsaI CCCAGC 3 cut(s) 237, 282, 514
HaeIII GGCC 1 cut(s) 360
Hin1I GRCGYC 1 cut(s) 497
Hin1II CATG 6 cut(s) 156, 192, 248, 253, 534, 614
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 6 cut(s) 107, 227, 309, 421, 594, 776
Hpy188I TCNGA 3 cut(s) 201, 487, 525
Hpy188III TCNNGA 4 cut(s) 23, 320, 605, 630
Hpy8I GTNNAC 6 cut(s) 107, 227, 309, 421, 594, 776
HpyAV CCTTC 3 cut(s) 20, 284, 350
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4IV ACGT 2 cut(s) 497, 590
HpyCH4V TGCA 6 cut(s) 227, 244, 347, 546, 644, 737
HpyF3I CTNAG 5 cut(s) 210, 221, 321, 564, 651
HpySE526I ACGT 2 cut(s) 497, 590
Hsp92I GRCGYC 1 cut(s) 497
Hsp92II CATG 6 cut(s) 156, 192, 248, 253, 534, 614
Kzo9I GATC 2 cut(s) 29, 525
LmnI GCTCC 1 cut(s) 175
Lsp1109I GCAGC 1 cut(s) 331
LweI GCATC 2 cut(s) 478, 631
MabI ACCWGGT 2 cut(s) 769, 831
MaeI CTAG 2 cut(s) 33, 473
MaeII ACGT 2 cut(s) 497, 590
MaeIII GTNAC 3 cut(s) 4, 260, 493
MalI GATC 2 cut(s) 31, 527
MboI GATC 2 cut(s) 29, 525
MboII GAAGA 4 cut(s) 446, 608, 755, 775
MflI RGATCY 1 cut(s) 29
MhlI GDGCHC 3 cut(s) 172, 229, 445
MluCI AATT 2 cut(s) 682, 756
MmeI TCCRAC 1 cut(s) 796
MnlI CCTC 3 cut(s) 178, 247, 316
MseI TTAA 3 cut(s) 111, 383, 447
MslI CAYNNNNRTG 3 cut(s) 299, 366, 486
MspR9I CCNGG 2 cut(s) 771, 833
Mva1269I GAATGC 1 cut(s) 481
MvaI CCWGG 2 cut(s) 771, 833
NcoI CCATGG 2 cut(s) 152, 249
NdeII GATC 2 cut(s) 29, 525
NlaIII CATG 6 cut(s) 156, 192, 248, 253, 534, 614
NlaIV GGNNCC 2 cut(s) 150, 830
NmuCI GTSAC 2 cut(s) 4, 493
NspI RCATGY 1 cut(s) 248
OliI CACNNNNGTG 1 cut(s) 366
PaeI GCATGC 1 cut(s) 248
PaqCI CACCTGC 2 cut(s) 155, 238
PctI GAATGC 1 cut(s) 481
PkrI GCNGC 2 cut(s) 346, 575
Ppu21I YACGTR 1 cut(s) 591
PpuMI RGGWCCY 1 cut(s) 767
Psp5II RGGWCCY 1 cut(s) 767
Psp6I CCWGG 2 cut(s) 769, 831
PspFI CCCAGC 3 cut(s) 233, 278, 510
PspGI CCWGG 2 cut(s) 769, 831
PspN4I GGNNCC 2 cut(s) 150, 830
PspPI GGNCC 4 cut(s) 149, 317, 421, 767
PspPPI RGGWCCY 1 cut(s) 767
PstNI CAGNNNCTG 1 cut(s) 523
PsuI RGATCY 1 cut(s) 29
RsaI GTAC 2 cut(s) 108, 593
RsaNI GTAC 2 cut(s) 107, 592
RseI CAYNNNNRTG 3 cut(s) 299, 366, 486
SaqAI TTAA 3 cut(s) 111, 383, 447
SatI GCNGC 2 cut(s) 345, 574
Sau3AI GATC 2 cut(s) 29, 525
Sau96I GGNCC 4 cut(s) 149, 317, 421, 767
ScrFI CCNGG 2 cut(s) 771, 833
SduI GDGCHC 3 cut(s) 172, 229, 445
SexAI ACCWGGT 2 cut(s) 769, 831
SfaNI GCATC 2 cut(s) 478, 631
SinI GGWCC 4 cut(s) 149, 317, 421, 767
SmiMI CAYNNNNRTG 3 cut(s) 299, 366, 486
SmlI CTYRAG 1 cut(s) 603
SmoI CTYRAG 1 cut(s) 603
SnaBI TACGTA 1 cut(s) 591
SphI GCATGC 1 cut(s) 248
Sse9I AATT 2 cut(s) 682, 756
SsiI CCGC 1 cut(s) 573
SspMI CTAG 2 cut(s) 33, 473
StyD4I CCNGG 2 cut(s) 769, 831
StyI CCWWGG 2 cut(s) 152, 249
TaaI ACNGT 1 cut(s) 67
TaiI ACGT 2 cut(s) 500, 593
TasI AATT 2 cut(s) 682, 756
TatI WGTACW 1 cut(s) 106
TauI GCSGC 1 cut(s) 576
Tru1I TTAA 3 cut(s) 111, 383, 447
Tru9I TTAA 3 cut(s) 111, 383, 447
TscAI CASTG 6 cut(s) 13, 109, 357, 370, 464, 793
TseFI GTSAC 2 cut(s) 4, 493
TseI GCWGC 1 cut(s) 344
Tsp45I GTSAC 2 cut(s) 4, 493
TspDTI ATGAA 1 cut(s) 714
TspRI CASTG 6 cut(s) 13, 109, 357, 370, 464, 793
VneI GTGCAC 1 cut(s) 225
VpaK11BI GGWCC 4 cut(s) 149, 317, 421, 767
XceI RCATGY 1 cut(s) 248
XspI CTAG 2 cut(s) 33, 473
ZraI GACGTC 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.