Rmu_sc0005594.1_g000015

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005594.1
OG0000488
Physical Location & Seq
Reverse (-)
74001 .. 76914
2914 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005594.1_g000015.1.cds

Sequence Viewer

Length: 1185 bp
atggatgtagacggaggcggaagcaagcggatcttcacgagattgggcgggccgcaatccgacccgaacaagaatcagaaggtatgctaccattggagagcgggcaagtgcaatcgccacccttgcccttatctccaccgagagctaccggcgccgcctggcgggctcaacggaacggcgtcgtctaagcggcaacacggcttcgccgccgccaccgacggcccgtcgtcggggccacgtggccggggtccgaataacttcaacggcggagcttcgaacacgtgggggcggaccggagggggtaatagggttttcgttaggaagatggataaggtgtgtaattattgggttcaggggaattgtagctatggcgataggtgtaagttcttgcattcttggagcatgggggactgtgttagcttgttgacgacgcttgaggggcatcagaatgttgttagtgggattgcattgccttctgggtctgataagctttatactggaagtaaggatgagactgtgagagtatgggattgccagtctggtcagtgcctgggagtaattaatcttggtggtgaagtgggttgtatgatcagtgaaggtccttgggtttttgttggtataccaaatgctgtaaaggcgtggaacacccaagctaactccgaaatgagtcttagtgggcctgttggacaagtttatgccatggttgtgggtaatgatttgctctttgctggtacgcaggatggttctatcttggcttggaagtttaatacagtcagtaattgcttcgaaccggcttattcacttaacggtcacacccttgcagttgtatcattagtagttggagcaaacaggctttattctggttcaatggatcattctataaggatctgggctgctactcaaagtggaaacttggaagtaacatatactcacgaagaagaccatcctttgcttacgctttgcgggatgcatgattcagaagccaagccagtcttactctctgcatgcaatgacaacactgtccgcctctatgatttgccatcgttttccgagaggggcaaaattttttcaaaacaggagatacgagcaatccaggttggccctggtggcctgtttttcactggtgatggaactggacaagtgagagtatggaagtggttggccgaaccagttgcagctgcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
WD40 zf-CCCH

Protein Analysis

394

Amino Acids

42.35

Weight (kDa)

8.19

Isoelectric Point (pI)

26.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000488)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25440 AT4G25440 AT4G25440 AT5G51980 AT5G51980
fragaria_vesca FvH4_2g11580 FvH4_3g29280 FvH4_4g05980 FvH4_7g28880 FvH4_7g28880
malus_domestica MD01G1195600.v1.1 MD02G1195200.v1.1 MD07G1262400.v1.1
prunus_persica Prupe.2G102200_v2.0.a1 Prupe.2G102200_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G288900_v2.0.a1
pyrus_communis pycom01g20620 pycom02g15900 pycom07g24140
rosa_chinensis RchiOBHm_Chr1g0376561 RchiOBHm_Chr3g0483051 RchiOBHm_Chr3g0483061 RchiOBHm_Chr3g0483601 RchiOBHm_Chr3g0483611 RchiOBHm_Chr4g0402321 RchiOBHm_Chr6g0270771
rosa_laevigata RLG00000009464 RLG00000009486 RLG00000013770 RLG00000023264 RLG00000023325 RLG00000026601 RLG00000035049
rosa_multiflora Rmu_co8110388.1_g000001 Rmu_co8419409.1_g000001 Rmu_sc0000555.1_g000012 Rmu_sc0000642.1_g000020 Rmu_sc0001308.1_g000010 Rmu_sc0002963.1_g000021 Rmu_sc0004788.1_g000012 Rmu_sc0005594.1_g000015 Rmu_sc0022770.1_g000001
rosa_roxburghii Rroxscaffold_4G00282000 Rroxscaffold_5G00341940 Rroxscaffold_5G00341950 Rroxscaffold_6G00398950 Rroxscaffold_7G00197610
rosa_rugosa Rorug01G0396500 Rorug03G0207400 Rorug03G0346000 Rorug04G0166800 Rorug06G0056400 Rorug06G0056500
rosa_samantha Rh1AG412700 Rh1BG372400 Rh1BG372600 Rh1CG386200 Rh1CG386500 Rh1DG403300 Rh1DG403500 Rh3AG255500 Rh3AG255600 Rh3BG292600 Rh3CG290200 Rh3DG278800 Rh3DG286100 Rh4AG075500 Rh4AG111600 Rh4BG071900 Rh4BG072100 Rh4BG231300 Rh4CG080200 Rh4CG080300 Rh4DG069300 Rh4DG069500 Rh6AG175700 Rh6BG178900 Rh6CG175200 Rh6DG167500
rosa_wichuraiana Rw1G036190 Rw3G023110 Rw4G006070 Rw6G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1019
AccB1I GGYRCC 1 cut(s) 151
AccBSI CCGCTC 1 cut(s) 101
AccI GTMKAC 2 cut(s) 9, 619
AclWI GGATC 3 cut(s) 38, 879, 893
AcoI YGGCCR 2 cut(s) 241, 1161
AcsI RAATTY 1 cut(s) 1062
AcvI CACGTG 2 cut(s) 239, 282
AcyI GRCGYC 2 cut(s) 152, 179
AfaI GTAC 1 cut(s) 733
AfiI CCNNNNNNNGG 3 cut(s) 161, 229, 230
AflIII ACRYGT 1 cut(s) 279
AgsI TTSAA 3 cut(s) 262, 867, 1071
AhdI GACNNNNNGTC 1 cut(s) 223
AjnI CCWGG 4 cut(s) 157, 549, 1092, 1102
AluBI AGCT 7 cut(s) 145, 272, 366, 420, 490, 653, 1178
AluI AGCT 7 cut(s) 145, 272, 366, 420, 490, 653, 1178
Alw26I GTCTC 1 cut(s) 506
AlwI GGATC 3 cut(s) 38, 879, 893
AlwNI CAGNNNCTG 1 cut(s) 550
AoxI GGCC 8 cut(s) 50, 220, 233, 241, 677, 1099, 1108, 1161
ApeKI GCWGC 3 cut(s) 893, 1175, 1178
ApoI RAATTY 1 cut(s) 1062
AseI ATTAAT 1 cut(s) 561
Asp700I GAANNNNTTC 1 cut(s) 257
AspLEI GCGC 1 cut(s) 154
AspS9I GGNCC 8 cut(s) 50, 221, 233, 248, 291, 599, 677, 1100
AsuC2I CCSGG 1 cut(s) 245
AsuHPI GGTGA 2 cut(s) 584, 1136
AsuII TTCGAA 2 cut(s) 275, 786
AvaII GGWCC 3 cut(s) 248, 291, 599
BanI GGYRCC 1 cut(s) 151
BanII GRGCYC 1 cut(s) 168
BarI GAAGNNNNNNTAC 2 cut(s) 71, 103
BauI CACGAG 1 cut(s) 37
BbrPI CACGTG 2 cut(s) 239, 282
BbsI GAAGAC 1 cut(s) 945
BbvI GCAGC 2 cut(s) 880, 1165
BccI CCATC 5 cut(s) 319, 734, 951, 1048, 1121
BceAI ACGGC 4 cut(s) 192, 214, 235, 280
BcgI CGANNNNNNTGC 1 cut(s) 1154
BciT130I CCWGG 4 cut(s) 159, 551, 1094, 1104
BclI TGATCA 1 cut(s) 588
BcnI CCSGG 1 cut(s) 245
BcoDI GTCTC 1 cut(s) 506
BfoI RGCGCY 1 cut(s) 155
BglI GCCNNNNNGGC 2 cut(s) 163, 1107
BisI GCNGC 8 cut(s) 53, 155, 191, 207, 210, 894, 1176, 1179
BlsI GCNGC 8 cut(s) 54, 156, 192, 208, 211, 895, 1177, 1180
Bme1390I CCNGG 5 cut(s) 159, 245, 551, 1094, 1104
Bme18I GGWCC 3 cut(s) 248, 291, 599
BmeRI GACNNNNNGTC 1 cut(s) 223
BmgT120I GGNCC 8 cut(s) 50, 221, 233, 248, 291, 599, 677, 1100
BmiI GGNNCC 3 cut(s) 153, 234, 249
BmrFI CCNGG 5 cut(s) 159, 245, 551, 1094, 1104
BmsI GCATC 2 cut(s) 451, 957
BpiI GAAGAC 1 cut(s) 945
Bpu14I TTCGAA 2 cut(s) 275, 786
BpuEI CTTGAG 1 cut(s) 455
BpuMI CCSGG 1 cut(s) 245
BsaAI YACGTR 2 cut(s) 239, 282
BsaHI GRCGYC 2 cut(s) 152, 179
BsaJI CCNNGG 5 cut(s) 244, 550, 602, 699, 1102
BsaWI WCCGGW 1 cut(s) 293
Bsc4I CCNNNNNNNGG 3 cut(s) 161, 229, 230
Bse118I RCCGGY 2 cut(s) 148, 790
Bse1I ACTGG 6 cut(s) 502, 535, 989, 1126, 1138, 1169
Bse3DI GCAATG 2 cut(s) 467, 1015
BseBI CCWGG 4 cut(s) 159, 551, 1094, 1104
BseDI CCNNGG 5 cut(s) 244, 550, 602, 699, 1102
BseGI GGATG 5 cut(s) 10, 514, 745, 943, 972
BseLI CCNNNNNNNGG 3 cut(s) 161, 229, 230
BseMI GCAATG 2 cut(s) 467, 1015
BseNI ACTGG 6 cut(s) 502, 535, 989, 1126, 1138, 1169
BseXI GCAGC 2 cut(s) 880, 1165
BshFI GGCC 8 cut(s) 52, 222, 235, 243, 679, 1101, 1110, 1163
BshNI GGYRCC 1 cut(s) 151
BsiSI CCGG 4 cut(s) 149, 244, 294, 791
BslFI GGGAC 1 cut(s) 422
BslI CCNNNNNNNGG 3 cut(s) 161, 229, 230
BsmAI GTCTC 1 cut(s) 506
BsmFI GGGAC 1 cut(s) 422
BsmI GAATGC 1 cut(s) 391
BsnI GGCC 8 cut(s) 52, 222, 235, 243, 679, 1101, 1110, 1163
Bsp119I TTCGAA 2 cut(s) 275, 786
Bsp1286I GDGCHC 1 cut(s) 168
Bsp143I GATC 4 cut(s) 30, 588, 871, 885
Bsp19I CCATGG 1 cut(s) 699
BspANI GGCC 8 cut(s) 52, 222, 235, 243, 679, 1101, 1110, 1163
BspLI GGNNCC 3 cut(s) 153, 234, 249
BspPI GGATC 3 cut(s) 38, 879, 893
BspT104I TTCGAA 2 cut(s) 275, 786
BspT107I GGYRCC 1 cut(s) 151
BsrBI CCGCTC 1 cut(s) 101
BsrDI GCAATG 2 cut(s) 467, 1015
BsrFI RCCGGY 2 cut(s) 148, 790
BsrI ACTGG 6 cut(s) 502, 535, 989, 1126, 1138, 1169
BssAI RCCGGY 2 cut(s) 148, 790
BssECI CCNNGG 5 cut(s) 244, 550, 602, 699, 1102
BssMI GATC 4 cut(s) 30, 588, 871, 885
BssNAI GTATAC 1 cut(s) 620
BssNI GRCGYC 2 cut(s) 152, 179
BssSI CACGAG 1 cut(s) 37
BssT1I CCWWGG 2 cut(s) 602, 699
Bst1107I GTATAC 1 cut(s) 620
Bst2BI CACGAG 1 cut(s) 37
Bst2UI CCWGG 4 cut(s) 159, 551, 1094, 1104
Bst4CI ACNGT 5 cut(s) 413, 517, 772, 809, 1021
BstACI GRCGYC 2 cut(s) 152, 179
BstBAI YACGTR 2 cut(s) 239, 282
BstBI TTCGAA 2 cut(s) 275, 786
BstC8I GCNNGC 5 cut(s) 26, 50, 103, 164, 1006
BstDEI CTNAG 2 cut(s) 186, 671
BstDSI CCRYGG 1 cut(s) 699
BstF5I GGATG 5 cut(s) 10, 514, 745, 943, 972
BstH2I RGCGCY 1 cut(s) 155
BstHHI GCGC 1 cut(s) 154
BstKTI GATC 4 cut(s) 33, 591, 874, 888
BstMAI GTCTC 1 cut(s) 506
BstMBI GATC 4 cut(s) 30, 588, 871, 885
BstMWI GCNNNNNNNGC 6 cut(s) 123, 151, 163, 439, 635, 1107
BstNI CCWGG 4 cut(s) 159, 551, 1094, 1104
BstNSI RCATGY 1 cut(s) 1008
BstSCI CCNGG 5 cut(s) 157, 243, 549, 1092, 1102
BstV1I GCAGC 2 cut(s) 880, 1165
BstV2I GAAGAC 1 cut(s) 945
BstX2I RGATCY 2 cut(s) 30, 885
BstXI CCANNNNNNTGG 1 cut(s) 706
BstYI RGATCY 2 cut(s) 30, 885
BstZ17I GTATAC 1 cut(s) 620
BsuRI GGCC 8 cut(s) 52, 222, 235, 243, 679, 1101, 1110, 1163
BtgI CCRYGG 1 cut(s) 699
BtsCI GGATG 5 cut(s) 10, 514, 745, 943, 972
BtsIMutI CAGTG 4 cut(s) 551, 598, 1017, 1119
Cac8I GCNNGC 5 cut(s) 26, 50, 103, 164, 1006
CaiI CAGNNNCTG 1 cut(s) 550
CfoI GCGC 1 cut(s) 154
Cfr10I RCCGGY 2 cut(s) 148, 790
Cfr13I GGNCC 8 cut(s) 50, 221, 233, 248, 291, 599, 677, 1100
CpoI CGGWCCG 1 cut(s) 291
CseI GACGC 2 cut(s) 168, 439
Csp6I GTAC 1 cut(s) 732
CspI CGGWCCG 1 cut(s) 291
CviAII CATG 4 cut(s) 403, 700, 971, 1005
CviQI GTAC 1 cut(s) 732
DdeI CTNAG 2 cut(s) 186, 671
DinI GGCGCC 1 cut(s) 153
DpnI GATC 4 cut(s) 32, 590, 873, 887
DpnII GATC 4 cut(s) 30, 588, 871, 885
DrdI GACNNNNNNGTC 1 cut(s) 1019
DriI GACNNNNNGTC 1 cut(s) 223
DseDI GACNNNNNNGTC 1 cut(s) 1019
EaeI YGGCCR 2 cut(s) 241, 1161
Eam1105I GACNNNNNGTC 1 cut(s) 223
EciI GGCGGA 4 cut(s) 33, 282, 304, 1013
Eco130I CCWWGG 2 cut(s) 602, 699
Eco24I GRGCYC 1 cut(s) 168
Eco47I GGWCC 3 cut(s) 248, 291, 599
Eco72I CACGTG 2 cut(s) 239, 282
EcoO109I RGGNCCY 1 cut(s) 599
EcoRII CCWGG 4 cut(s) 157, 549, 1092, 1102
EcoT14I CCWWGG 2 cut(s) 602, 699
EcoT22I ATGCAT 1 cut(s) 972
EcoT38I GRGCYC 1 cut(s) 168
EgeI GGCGCC 1 cut(s) 153
EheI GGCGCC 1 cut(s) 153
ErhI CCWWGG 2 cut(s) 602, 699
FaeI CATG 4 cut(s) 406, 703, 974, 1008
FalI AAGNNNNNCTT 4 cut(s) 17, 49, 977, 1009
FaqI GGGAC 1 cut(s) 422
FatI CATG 4 cut(s) 402, 699, 970, 1004
FauI CCCGC 4 cut(s) 41, 94, 155, 956
FbaI TGATCA 1 cut(s) 588
FblI GTMKAC 2 cut(s) 9, 619
Fnu4HI GCNGC 8 cut(s) 53, 155, 191, 207, 210, 894, 1176, 1179
FokI GGATG 5 cut(s) 17, 521, 752, 930, 979
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 8 cut(s) 53, 155, 191, 207, 210, 894, 1176, 1179
GlaI GCGC 1 cut(s) 153
GluI GCNGC 8 cut(s) 53, 155, 191, 207, 210, 894, 1176, 1179
HaeII RGCGCY 1 cut(s) 155
HaeIII GGCC 8 cut(s) 52, 222, 235, 243, 679, 1101, 1110, 1163
HapII CCGG 4 cut(s) 149, 244, 294, 791
HgaI GACGC 2 cut(s) 168, 439
HhaI GCGC 1 cut(s) 154
Hin1I GRCGYC 2 cut(s) 152, 179
Hin1II CATG 4 cut(s) 406, 703, 974, 1008
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HincII GTYRAC 1 cut(s) 426
HindII GTYRAC 1 cut(s) 426
HindIII AAGCTT 1 cut(s) 488
HinfI GANTC 3 cut(s) 73, 667, 974
HpaII CCGG 4 cut(s) 149, 244, 294, 791
HphI GGTGA 2 cut(s) 584, 1136
Hpy166II GTNNAC 3 cut(s) 10, 426, 620
Hpy188I TCNGA 8 cut(s) 61, 78, 252, 447, 484, 661, 979, 1051
Hpy188III TCNNGA 2 cut(s) 37, 932
Hpy8I GTNNAC 3 cut(s) 10, 426, 620
Hpy99I CGWCG 5 cut(s) 184, 221, 229, 232, 433
HpyAV CCTTC 3 cut(s) 73, 483, 590
HpyCH4III ACNGT 5 cut(s) 413, 517, 772, 809, 1021
HpyCH4IV ACGT 2 cut(s) 238, 281
HpyCH4V TGCA 8 cut(s) 111, 391, 467, 821, 970, 1004, 1008, 1175
HpyF10VI GCNNNNNNNGC 6 cut(s) 123, 151, 163, 439, 635, 1107
HpyF3I CTNAG 2 cut(s) 186, 671
HpySE526I ACGT 2 cut(s) 238, 281
Hsp92I GRCGYC 2 cut(s) 152, 179
Hsp92II CATG 4 cut(s) 406, 703, 974, 1008
HspAI GCGC 1 cut(s) 152
KasI GGCGCC 1 cut(s) 151
Ksp22I TGATCA 1 cut(s) 588
Kzo9I GATC 4 cut(s) 30, 588, 871, 885
LmnI GCTCC 3 cut(s) 269, 399, 842
Lsp1109I GCAGC 2 cut(s) 880, 1165
LweI GCATC 2 cut(s) 451, 957
MaeII ACGT 2 cut(s) 238, 281
MaeIII GTNAC 2 cut(s) 809, 919
MalI GATC 4 cut(s) 32, 590, 873, 887
MbiI CCGCTC 1 cut(s) 101
MboI GATC 4 cut(s) 30, 588, 871, 885
MboII GAAGA 4 cut(s) 25, 334, 947, 950
MflI RGATCY 2 cut(s) 30, 885
MhlI GDGCHC 1 cut(s) 168
MluCI AATT 5 cut(s) 340, 358, 558, 778, 1062
Mly113I GGCGCC 1 cut(s) 152
MlyI GAGTC 1 cut(s) 676
MmeI TCCRAC 3 cut(s) 84, 664, 820
MnlI CCTC 5 cut(s) 8, 290, 430, 1037, 1047
Mph1103I ATGCAT 1 cut(s) 972
MroXI GAANNNNTTC 1 cut(s) 257
MseI TTAA 3 cut(s) 561, 765, 804
MslI CAYNNNNRTG 2 cut(s) 447, 704
MspA1I CMGCKG 1 cut(s) 1178
MspI CCGG 4 cut(s) 149, 244, 294, 791
MspR9I CCNGG 5 cut(s) 159, 245, 551, 1094, 1104
Mva1269I GAATGC 1 cut(s) 391
MvaI CCWGG 4 cut(s) 159, 551, 1094, 1104
MwoI GCNNNNNNNGC 6 cut(s) 123, 151, 163, 439, 635, 1107
NarI GGCGCC 1 cut(s) 152
NciI CCSGG 1 cut(s) 245
NcoI CCATGG 1 cut(s) 699
NdeII GATC 4 cut(s) 30, 588, 871, 885
NlaIII CATG 4 cut(s) 406, 703, 974, 1008
NlaIV GGNNCC 3 cut(s) 153, 234, 249
NmuCI GTSAC 1 cut(s) 809
NsiI ATGCAT 1 cut(s) 972
NspI RCATGY 1 cut(s) 1008
NspV TTCGAA 2 cut(s) 275, 786
PaeI GCATGC 1 cut(s) 1008
PctI GAATGC 1 cut(s) 391
PdmI GAANNNNTTC 1 cut(s) 257
PfeI GAWTC 2 cut(s) 73, 974
PkrI GCNGC 8 cut(s) 54, 156, 192, 208, 211, 895, 1177, 1180
PleI GAGTC 1 cut(s) 675
PluTI GGCGCC 1 cut(s) 155
PmaCI CACGTG 2 cut(s) 239, 282
PmlI CACGTG 2 cut(s) 239, 282
PpsI GAGTC 1 cut(s) 675
Ppu21I YACGTR 2 cut(s) 239, 282
PpuMI RGGWCCY 1 cut(s) 599
PshBI ATTAAT 1 cut(s) 561
Psp5II RGGWCCY 1 cut(s) 599
Psp6I CCWGG 4 cut(s) 157, 549, 1092, 1102
PspCI CACGTG 2 cut(s) 239, 282
PspGI CCWGG 4 cut(s) 157, 549, 1092, 1102
PspN4I GGNNCC 3 cut(s) 153, 234, 249
PspPI GGNCC 8 cut(s) 50, 221, 233, 248, 291, 599, 677, 1100
PspPPI RGGWCCY 1 cut(s) 599
PstNI CAGNNNCTG 1 cut(s) 550
PsuI RGATCY 2 cut(s) 30, 885
PvuII CAGCTG 1 cut(s) 1178
RsaI GTAC 1 cut(s) 733
RsaNI GTAC 1 cut(s) 732
RseI CAYNNNNRTG 2 cut(s) 447, 704
Rsr2I CGGWCCG 1 cut(s) 291
RsrII CGGWCCG 1 cut(s) 291
SaqAI TTAA 3 cut(s) 561, 765, 804
SatI GCNGC 8 cut(s) 53, 155, 191, 207, 210, 894, 1176, 1179
Sau3AI GATC 4 cut(s) 30, 588, 871, 885
Sau96I GGNCC 8 cut(s) 50, 221, 233, 248, 291, 599, 677, 1100
SchI GAGTC 1 cut(s) 676
ScrFI CCNGG 5 cut(s) 159, 245, 551, 1094, 1104
SduI GDGCHC 1 cut(s) 168
SfaNI GCATC 2 cut(s) 451, 957
SfiI GGCCNNNNNGGCC 1 cut(s) 1107
SfoI GGCGCC 1 cut(s) 153
SfuI TTCGAA 2 cut(s) 275, 786
SinI GGWCC 3 cut(s) 248, 291, 599
SmiMI CAYNNNNRTG 2 cut(s) 447, 704
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
SphI GCATGC 1 cut(s) 1008
Sse9I AATT 5 cut(s) 340, 358, 558, 778, 1062
SspDI GGCGCC 1 cut(s) 151
StyD4I CCNGG 5 cut(s) 157, 243, 549, 1092, 1102
StyI CCWWGG 2 cut(s) 602, 699
TaaI ACNGT 5 cut(s) 413, 517, 772, 809, 1021
TaiI ACGT 2 cut(s) 241, 284
TaqI TCGA 2 cut(s) 275, 786
TasI AATT 5 cut(s) 340, 358, 558, 778, 1062
TauI GCSGC 5 cut(s) 55, 157, 193, 209, 212
TfiI GAWTC 2 cut(s) 73, 974
Tru1I TTAA 3 cut(s) 561, 765, 804
Tru9I TTAA 3 cut(s) 561, 765, 804
TscAI CASTG 4 cut(s) 551, 598, 1024, 1126
TseFI GTSAC 1 cut(s) 809
TseI GCWGC 3 cut(s) 893, 1175, 1178
Tsp45I GTSAC 1 cut(s) 809
TspGWI ACGGA 2 cut(s) 27, 186
TspRI CASTG 4 cut(s) 551, 598, 1024, 1126
VpaK11BI GGWCC 3 cut(s) 248, 291, 599
VspI ATTAAT 1 cut(s) 561
XapI RAATTY 1 cut(s) 1062
XceI RCATGY 1 cut(s) 1008
XcmI CCANNNNNNNNNTGG 1 cut(s) 1100
XmiI GTMKAC 2 cut(s) 9, 619
XmnI GAANNNNTTC 1 cut(s) 257
Zsp2I ATGCAT 1 cut(s) 972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.