RLG00000026601

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000488
Physical Location & Seq
Forward (+)
4171154 .. 4174239
3086 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026601

Sequence Viewer

Length: 1305 bp
ATGGATGTAGACGGAGGCGGAAGCAAGCGGATCTTCACGAGATTGGGCGGGCTGCAATCCGACCCGAACAAGAATCAGAAGGTATGCTACCATTGGAGAGCGGGCAAGTGCAATCGCCACCCTTGCCCTTATCTCCACCGAGAGCTGCCGGCGCCGCCTGGCGGGCTCAACGGAACGGCGTCGTCTAAGCGGCAACACGGCTTCGCAGCCGCGACGGACGGCCCGTCGTCGGGGCCACGTGGCCGGGGTCCGAATAACTTCAACGGCGGAGCTTCGAACACGTGGGGGCGGACCGGAGGAGGTAATAGGGTTTTCGTTAGGAAGATGGATAAGGTGTGTAATTATTGGGTTCAGGGGAATTGTAGCTATGGCGATAGGTGTAAGTTCTTGCATTCTTGGAGCATGGGGGACTGTGTTATCTTGTTGACGACGCTTGAGGGGCATCAGAATGTTGTTAGTGGGATTGCATTGCCTTCTGGGTCTGATAAGCTTTATACTGGAAGTAAGGATGAGACTGTGAGAGTATGGGATTGCCAGTCTGGTCAGTGCTTGGGAGTAATTAATCTTGGTGGTGAAGTTGGTTGTATGATCAGTGAAGGTCCTTGGGTTTTTGTTGGTATACCAAATGCTGTAAAGGCGTGGAACACCCAAGCTAACTCTGAAATGAGTCTTAGTGGGCCTGTTGGACAAGTTTATGCCATGGTTGTGGGTAATGATTTGCTCTTTGCTGGTACGCAGGATGGTTCTATCTTGGCTTGGAAGTTTAATACAGTCACTAATTGCTTCGAACCGGCTTATTCACTTAAAGGTCACACCCTTGCAGTTGTATCATTAGTAGTTGGAGCAAATAGGCTTTATTCTGGTTCAATGGATCATGCTATAAGGGTCTGGAGCCTAGATAACTTGCAATGTATACAAACACTAACAGAGCATACGTCAGTTGTGATGTCCGTTCTTTGCTGGGATCAGTTTCTCTTATCATCTTCTTTGGATCAAAAATTAAAGATCTGGGCTGCTACTCAAAGTGGAAACTTGGAAGTAACATATACTCACGAAGAAGACCATCCTTTGCTTACACTTTGTGGGATGCATGATTCAGAAGCCAAGCCAGTCTTACTGTGTGCATGCAATGACAATACTGTCCGCCTCTATGATTTGCCATCGTTTTCCGAGAGGGGCAAAATTTTCTCAAAACAGGAGATACGAGCAATCCAGGTTGGCCCTGGTGGCTTGTTTTTCACTGGCGATGGAACTGGACAAGTGAGAGTATGGAAGTGGTTGGCGGAACCAGTTGCAACTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
WD40 zf-CCCH

Protein Analysis

435

Amino Acids

47.04

Weight (kDa)

7.86

Isoelectric Point (pI)

27.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH_4 PF18044 111 - 131 1.2e-07 CCCH-type zinc finger
zf-CCCH PF00642 112 - 132 6e-07 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf_CCCH_4 PF18345 113 - 131 1.4e-07 Zinc finger domain
Beta-prop_WDR5 PF25175 141 - 187 7.3e-08 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 142 - 185 2.3e-06 WDR3 first beta-propeller domain
WD40 PF00400 142 - 177 6.3e-07 WD domain, G-beta repeat
EIF3I PF24805 142 - 191 1.6e-06 EIF3I
Beta-prop_THOC3 PF25174 142 - 318 4.4e-22 THOC3 beta-propeller domain
Beta-prop_EML_2 PF23414 154 - 342 2.2e-08 Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz PF24807 202 - 346 1.8e-10 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 203 - 386 5.9e-19 WDR3 first beta-propeller domain
WD40_WDHD1_1st PF24817 206 - 426 4.4e-13 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 211 - 388 4.1e-17 WDR5 beta-propeller domain
Beta-prop_IP5PC_F PF23754 229 - 311 3.8e-06 IP5P C-F beta-propeller
WD40_Prp19 PF24814 238 - 318 1.4e-06 Prp19 WD40 domain
Beta-prop_WDR3_2nd PF25172 262 - 385 1.3e-09 WDR3 second beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 279 - 388 9.1e-06 MABP1/WDR62 second WD40 domain
WD40_Prp19 PF24814 283 - 425 7.3e-13 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 283 - 426 1.7e-13 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000488)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25440 AT4G25440 AT4G25440 AT5G51980 AT5G51980
fragaria_vesca FvH4_2g11580 FvH4_3g29280 FvH4_4g05980 FvH4_7g28880 FvH4_7g28880
malus_domestica MD01G1195600.v1.1 MD02G1195200.v1.1 MD07G1262400.v1.1
prunus_persica Prupe.2G102200_v2.0.a1 Prupe.2G102200_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G288900_v2.0.a1
pyrus_communis pycom01g20620 pycom02g15900 pycom07g24140
rosa_chinensis RchiOBHm_Chr1g0376561 RchiOBHm_Chr3g0483051 RchiOBHm_Chr3g0483061 RchiOBHm_Chr3g0483601 RchiOBHm_Chr3g0483611 RchiOBHm_Chr4g0402321 RchiOBHm_Chr6g0270771
rosa_laevigata RLG00000009464 RLG00000009486 RLG00000013770 RLG00000023264 RLG00000023325 RLG00000026601 RLG00000035049
rosa_multiflora Rmu_co8110388.1_g000001 Rmu_co8419409.1_g000001 Rmu_sc0000555.1_g000012 Rmu_sc0000642.1_g000020 Rmu_sc0001308.1_g000010 Rmu_sc0002963.1_g000021 Rmu_sc0004788.1_g000012 Rmu_sc0005594.1_g000015 Rmu_sc0022770.1_g000001
rosa_roxburghii Rroxscaffold_4G00282000 Rroxscaffold_5G00341940 Rroxscaffold_5G00341950 Rroxscaffold_6G00398950 Rroxscaffold_7G00197610
rosa_rugosa Rorug01G0396500 Rorug03G0207400 Rorug03G0346000 Rorug04G0166800 Rorug06G0056400 Rorug06G0056500
rosa_samantha Rh1AG412700 Rh1BG372400 Rh1BG372600 Rh1CG386200 Rh1CG386500 Rh1DG403300 Rh1DG403500 Rh3AG255500 Rh3AG255600 Rh3BG292600 Rh3CG290200 Rh3DG278800 Rh3DG286100 Rh4AG075500 Rh4AG111600 Rh4BG071900 Rh4BG072100 Rh4BG231300 Rh4CG080200 Rh4CG080300 Rh4DG069300 Rh4DG069500 Rh6AG175700 Rh6BG178900 Rh6CG175200 Rh6DG167500
rosa_wichuraiana Rw1G036190 Rw3G023110 Rw4G006070 Rw6G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1139
AccB1I GGYRCC 1 cut(s) 151
AccBSI CCGCTC 1 cut(s) 101
AccI GTMKAC 3 cut(s) 9, 619, 913
AccII CGCG 1 cut(s) 212
AclWI GGATC 4 cut(s) 38, 879, 972, 999
AcoI YGGCCR 1 cut(s) 241
AcsI RAATTY 1 cut(s) 1182
AcvI CACGTG 2 cut(s) 239, 282
AcyI GRCGYC 2 cut(s) 152, 179
AdeI CACNNNGTG 1 cut(s) 1082
AfaI GTAC 1 cut(s) 733
AfiI CCNNNNNNNGG 3 cut(s) 161, 229, 230
AflIII ACRYGT 1 cut(s) 279
AgsI TTSAA 2 cut(s) 262, 867
AhdI GACNNNNNGTC 1 cut(s) 223
AjnI CCWGG 3 cut(s) 157, 1212, 1222
AluBI AGCT 5 cut(s) 145, 272, 366, 490, 653
AluI AGCT 5 cut(s) 145, 272, 366, 490, 653
Alw26I GTCTC 1 cut(s) 506
AlwI GGATC 4 cut(s) 38, 879, 972, 999
AoxI GGCC 5 cut(s) 220, 233, 241, 677, 1219
ApeKI GCWGC 4 cut(s) 52, 145, 206, 1013
ApoI RAATTY 1 cut(s) 1182
AseI ATTAAT 1 cut(s) 561
Asp700I GAANNNNTTC 1 cut(s) 257
AspLEI GCGC 1 cut(s) 154
AspS9I GGNCC 7 cut(s) 221, 233, 248, 291, 599, 677, 1220
AsuC2I CCSGG 1 cut(s) 245
AsuHPI GGTGA 1 cut(s) 584
AsuII TTCGAA 2 cut(s) 275, 786
AvaII GGWCC 3 cut(s) 248, 291, 599
BanI GGYRCC 1 cut(s) 151
BanII GRGCYC 1 cut(s) 168
BarI GAAGNNNNNNTAC 2 cut(s) 71, 103
BauI CACGAG 1 cut(s) 37
BbrPI CACGTG 2 cut(s) 239, 282
BbsI GAAGAC 1 cut(s) 1065
BbvI GCAGC 4 cut(s) 39, 132, 218, 1000
BccI CCATC 5 cut(s) 319, 734, 1071, 1168, 1241
BceAI ACGGC 4 cut(s) 192, 214, 235, 280
BciT130I CCWGG 3 cut(s) 159, 1214, 1224
BclI TGATCA 1 cut(s) 588
BcnI CCSGG 1 cut(s) 245
BcoDI GTCTC 1 cut(s) 506
BfaI CTAG 1 cut(s) 896
BfoI RGCGCY 1 cut(s) 155
BglI GCCNNNNNGGC 2 cut(s) 163, 1227
BglII AGATCT 1 cut(s) 1005
BisI GCNGC 7 cut(s) 53, 146, 155, 191, 207, 210, 1014
BlsI GCNGC 7 cut(s) 54, 147, 156, 192, 208, 211, 1015
Bme1390I CCNGG 4 cut(s) 159, 245, 1214, 1224
Bme18I GGWCC 3 cut(s) 248, 291, 599
BmeRI GACNNNNNGTC 1 cut(s) 223
BmgT120I GGNCC 7 cut(s) 221, 233, 248, 291, 599, 677, 1220
BmiI GGNNCC 5 cut(s) 153, 234, 249, 893, 1287
BmrFI CCNGG 4 cut(s) 159, 245, 1214, 1224
BmsI GCATC 2 cut(s) 451, 1077
BpiI GAAGAC 1 cut(s) 1065
BpmI CTGGAG 1 cut(s) 910
Bpu14I TTCGAA 2 cut(s) 275, 786
BpuEI CTTGAG 1 cut(s) 455
BpuMI CCSGG 1 cut(s) 245
BsaAI YACGTR 2 cut(s) 239, 282
BsaHI GRCGYC 2 cut(s) 152, 179
BsaJI CCNNGG 4 cut(s) 244, 602, 699, 1222
BsaWI WCCGGW 1 cut(s) 293
Bsc4I CCNNNNNNNGG 3 cut(s) 161, 229, 230
Bse118I RCCGGY 2 cut(s) 148, 790
Bse1I ACTGG 6 cut(s) 502, 535, 1109, 1246, 1258, 1289
Bse3DI GCAATG 3 cut(s) 467, 914, 1135
BseBI CCWGG 3 cut(s) 159, 1214, 1224
BseDI CCNNGG 4 cut(s) 244, 602, 699, 1222
BseGI GGATG 5 cut(s) 10, 514, 745, 1063, 1092
BseLI CCNNNNNNNGG 3 cut(s) 161, 229, 230
BseMI GCAATG 3 cut(s) 467, 914, 1135
BseNI ACTGG 6 cut(s) 502, 535, 1109, 1246, 1258, 1289
BseRI GAGGAG 1 cut(s) 312
BseXI GCAGC 4 cut(s) 39, 132, 218, 1000
BseYI CCCAGC 1 cut(s) 960
Bsh1236I CGCG 1 cut(s) 212
BshFI GGCC 5 cut(s) 222, 235, 243, 679, 1221
BshNI GGYRCC 1 cut(s) 151
BsiSI CCGG 4 cut(s) 149, 244, 294, 791
BslFI GGGAC 1 cut(s) 422
BslI CCNNNNNNNGG 3 cut(s) 161, 229, 230
BsmAI GTCTC 1 cut(s) 506
BsmFI GGGAC 1 cut(s) 422
BsmI GAATGC 1 cut(s) 391
BsnI GGCC 5 cut(s) 222, 235, 243, 679, 1221
Bsp119I TTCGAA 2 cut(s) 275, 786
Bsp1286I GDGCHC 1 cut(s) 168
Bsp143I GATC 6 cut(s) 30, 588, 871, 964, 991, 1005
Bsp19I CCATGG 1 cut(s) 699
BspANI GGCC 5 cut(s) 222, 235, 243, 679, 1221
BspFNI CGCG 1 cut(s) 212
BspLI GGNNCC 5 cut(s) 153, 234, 249, 893, 1287
BspPI GGATC 4 cut(s) 38, 879, 972, 999
BspT104I TTCGAA 2 cut(s) 275, 786
BspT107I GGYRCC 1 cut(s) 151
BsrBI CCGCTC 1 cut(s) 101
BsrDI GCAATG 3 cut(s) 467, 914, 1135
BsrFI RCCGGY 2 cut(s) 148, 790
BsrI ACTGG 6 cut(s) 502, 535, 1109, 1246, 1258, 1289
BssAI RCCGGY 2 cut(s) 148, 790
BssECI CCNNGG 4 cut(s) 244, 602, 699, 1222
BssMI GATC 6 cut(s) 30, 588, 871, 964, 991, 1005
BssNAI GTATAC 2 cut(s) 620, 914
BssNI GRCGYC 2 cut(s) 152, 179
BssSI CACGAG 1 cut(s) 37
BssT1I CCWWGG 2 cut(s) 602, 699
Bst1107I GTATAC 2 cut(s) 620, 914
Bst2BI CACGAG 1 cut(s) 37
Bst2UI CCWGG 3 cut(s) 159, 1214, 1224
Bst4CI ACNGT 5 cut(s) 413, 517, 772, 1119, 1141
BstACI GRCGYC 2 cut(s) 152, 179
BstBAI YACGTR 2 cut(s) 239, 282
BstBI TTCGAA 2 cut(s) 275, 786
BstC8I GCNNGC 6 cut(s) 26, 50, 103, 150, 164, 1126
BstDEI CTNAG 2 cut(s) 186, 671
BstDSI CCRYGG 1 cut(s) 699
BstF5I GGATG 5 cut(s) 10, 514, 745, 1063, 1092
BstFNI CGCG 1 cut(s) 212
BstH2I RGCGCY 1 cut(s) 155
BstHHI GCGC 1 cut(s) 154
BstKTI GATC 6 cut(s) 33, 591, 874, 967, 994, 1008
BstMAI GTCTC 1 cut(s) 506
BstMBI GATC 6 cut(s) 30, 588, 871, 964, 991, 1005
BstMWI GCNNNNNNNGC 7 cut(s) 123, 151, 154, 163, 439, 635, 1227
BstNI CCWGG 3 cut(s) 159, 1214, 1224
BstNSI RCATGY 1 cut(s) 1128
BstSCI CCNGG 4 cut(s) 157, 243, 1212, 1222
BstUI CGCG 1 cut(s) 212
BstV1I GCAGC 4 cut(s) 39, 132, 218, 1000
BstV2I GAAGAC 1 cut(s) 1065
BstX2I RGATCY 2 cut(s) 30, 1005
BstXI CCANNNNNNTGG 1 cut(s) 706
BstYI RGATCY 2 cut(s) 30, 1005
BstZ17I GTATAC 2 cut(s) 620, 914
BsuRI GGCC 5 cut(s) 222, 235, 243, 679, 1221
BtgI CCRYGG 1 cut(s) 699
BtgZI GCGATG 1 cut(s) 1260
BtsCI GGATG 5 cut(s) 10, 514, 745, 1063, 1092
BtsIMutI CAGTG 3 cut(s) 551, 598, 1239
Cac8I GCNNGC 6 cut(s) 26, 50, 103, 150, 164, 1126
CfoI GCGC 1 cut(s) 154
Cfr10I RCCGGY 2 cut(s) 148, 790
Cfr13I GGNCC 7 cut(s) 221, 233, 248, 291, 599, 677, 1220
CpoI CGGWCCG 1 cut(s) 291
CseI GACGC 2 cut(s) 168, 439
Csp6I GTAC 1 cut(s) 732
CspI CGGWCCG 1 cut(s) 291
CviAII CATG 5 cut(s) 403, 700, 875, 1091, 1125
CviQI GTAC 1 cut(s) 732
DdeI CTNAG 2 cut(s) 186, 671
DinI GGCGCC 1 cut(s) 153
DpnI GATC 6 cut(s) 32, 590, 873, 966, 993, 1007
DpnII GATC 6 cut(s) 30, 588, 871, 964, 991, 1005
DraIII CACNNNGTG 1 cut(s) 1082
DrdI GACNNNNNNGTC 1 cut(s) 1139
DriI GACNNNNNGTC 1 cut(s) 223
DseDI GACNNNNNNGTC 1 cut(s) 1139
EaeI YGGCCR 1 cut(s) 241
Eam1105I GACNNNNNGTC 1 cut(s) 223
EciI GGCGGA 5 cut(s) 33, 282, 304, 1133, 1298
Eco130I CCWWGG 2 cut(s) 602, 699
Eco24I GRGCYC 1 cut(s) 168
Eco47I GGWCC 3 cut(s) 248, 291, 599
Eco72I CACGTG 2 cut(s) 239, 282
EcoO109I RGGNCCY 1 cut(s) 599
EcoRII CCWGG 3 cut(s) 157, 1212, 1222
EcoT14I CCWWGG 2 cut(s) 602, 699
EcoT22I ATGCAT 1 cut(s) 1092
EcoT38I GRGCYC 1 cut(s) 168
EgeI GGCGCC 1 cut(s) 153
EheI GGCGCC 1 cut(s) 153
ErhI CCWWGG 2 cut(s) 602, 699
FaeI CATG 5 cut(s) 406, 703, 878, 1094, 1128
FalI AAGNNNNNCTT 4 cut(s) 17, 49, 1097, 1129
FaqI GGGAC 1 cut(s) 422
FatI CATG 5 cut(s) 402, 699, 874, 1090, 1124
FauI CCCGC 3 cut(s) 41, 94, 155
FbaI TGATCA 1 cut(s) 588
FblI GTMKAC 3 cut(s) 9, 619, 913
Fnu4HI GCNGC 7 cut(s) 53, 146, 155, 191, 207, 210, 1014
FokI GGATG 5 cut(s) 17, 521, 752, 1050, 1099
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 7 cut(s) 53, 146, 155, 191, 207, 210, 1014
FspBI CTAG 1 cut(s) 896
GlaI GCGC 1 cut(s) 153
GluI GCNGC 7 cut(s) 53, 146, 155, 191, 207, 210, 1014
GsaI CCCAGC 1 cut(s) 964
GsuI CTGGAG 1 cut(s) 910
HaeII RGCGCY 1 cut(s) 155
HaeIII GGCC 5 cut(s) 222, 235, 243, 679, 1221
HapII CCGG 4 cut(s) 149, 244, 294, 791
HgaI GACGC 2 cut(s) 168, 439
HhaI GCGC 1 cut(s) 154
Hin1I GRCGYC 2 cut(s) 152, 179
Hin1II CATG 5 cut(s) 406, 703, 878, 1094, 1128
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HincII GTYRAC 1 cut(s) 426
HindII GTYRAC 1 cut(s) 426
HindIII AAGCTT 1 cut(s) 488
HinfI GANTC 3 cut(s) 73, 667, 1094
HpaII CCGG 4 cut(s) 149, 244, 294, 791
HphI GGTGA 1 cut(s) 584
Hpy166II GTNNAC 4 cut(s) 10, 426, 620, 914
Hpy188I TCNGA 8 cut(s) 61, 78, 252, 447, 484, 661, 1099, 1171
Hpy188III TCNNGA 3 cut(s) 37, 889, 1052
Hpy8I GTNNAC 4 cut(s) 10, 426, 620, 914
Hpy99I CGWCG 5 cut(s) 184, 217, 229, 232, 433
HpyAV CCTTC 3 cut(s) 73, 483, 590
HpyCH4III ACNGT 5 cut(s) 413, 517, 772, 1119, 1141
HpyCH4IV ACGT 3 cut(s) 238, 281, 935
HpyF10VI GCNNNNNNNGC 7 cut(s) 123, 151, 154, 163, 439, 635, 1227
HpyF3I CTNAG 2 cut(s) 186, 671
HpySE526I ACGT 3 cut(s) 238, 281, 935
Hsp92I GRCGYC 2 cut(s) 152, 179
Hsp92II CATG 5 cut(s) 406, 703, 878, 1094, 1128
HspAI GCGC 1 cut(s) 152
KasI GGCGCC 1 cut(s) 151
KroI GCCGGC 1 cut(s) 148
KroNI GCCGGC 1 cut(s) 150
Ksp22I TGATCA 1 cut(s) 588
Kzo9I GATC 6 cut(s) 30, 588, 871, 964, 991, 1005
LmnI GCTCC 4 cut(s) 269, 399, 842, 891
Lsp1109I GCAGC 4 cut(s) 39, 132, 218, 1000
LweI GCATC 2 cut(s) 451, 1077
MaeI CTAG 1 cut(s) 896
MaeII ACGT 3 cut(s) 238, 281, 935
MaeIII GTNAC 3 cut(s) 772, 809, 1039
MalI GATC 6 cut(s) 32, 590, 873, 966, 993, 1007
MbiI CCGCTC 1 cut(s) 101
MboI GATC 6 cut(s) 30, 588, 871, 964, 991, 1005
MboII GAAGA 5 cut(s) 25, 334, 975, 1067, 1070
MflI RGATCY 2 cut(s) 30, 1005
MhlI GDGCHC 1 cut(s) 168
MluCI AATT 6 cut(s) 340, 358, 558, 778, 998, 1182
Mly113I GGCGCC 1 cut(s) 152
MlyI GAGTC 1 cut(s) 676
MmeI TCCRAC 3 cut(s) 84, 664, 820
MnlI CCTC 6 cut(s) 8, 290, 293, 430, 1157, 1167
Mph1103I ATGCAT 1 cut(s) 1092
MroNI GCCGGC 1 cut(s) 148
MroXI GAANNNNTTC 1 cut(s) 257
MseI TTAA 4 cut(s) 561, 765, 804, 1001
MslI CAYNNNNRTG 2 cut(s) 447, 704
MspI CCGG 4 cut(s) 149, 244, 294, 791
MspR9I CCNGG 4 cut(s) 159, 245, 1214, 1224
Mva1269I GAATGC 1 cut(s) 391
MvaI CCWGG 3 cut(s) 159, 1214, 1224
MvnI CGCG 1 cut(s) 212
MwoI GCNNNNNNNGC 7 cut(s) 123, 151, 154, 163, 439, 635, 1227
NaeI GCCGGC 1 cut(s) 150
NarI GGCGCC 1 cut(s) 152
NciI CCSGG 1 cut(s) 245
NcoI CCATGG 1 cut(s) 699
NdeII GATC 6 cut(s) 30, 588, 871, 964, 991, 1005
NgoMIV GCCGGC 1 cut(s) 148
NlaIII CATG 5 cut(s) 406, 703, 878, 1094, 1128
NlaIV GGNNCC 5 cut(s) 153, 234, 249, 893, 1287
NmuCI GTSAC 2 cut(s) 772, 809
NsiI ATGCAT 1 cut(s) 1092
NspI RCATGY 1 cut(s) 1128
NspV TTCGAA 2 cut(s) 275, 786
PaeI GCATGC 1 cut(s) 1128
PcsI WCGNNNNNNNCGW 1 cut(s) 221
PctI GAATGC 1 cut(s) 391
PdiI GCCGGC 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 257
PfeI GAWTC 2 cut(s) 73, 1094
PkrI GCNGC 7 cut(s) 54, 147, 156, 192, 208, 211, 1015
PleI GAGTC 1 cut(s) 675
PluTI GGCGCC 1 cut(s) 155
PmaCI CACGTG 2 cut(s) 239, 282
PmlI CACGTG 2 cut(s) 239, 282
PpsI GAGTC 1 cut(s) 675
Ppu21I YACGTR 2 cut(s) 239, 282
PpuMI RGGWCCY 1 cut(s) 599
PshBI ATTAAT 1 cut(s) 561
Psp5II RGGWCCY 1 cut(s) 599
Psp6I CCWGG 3 cut(s) 157, 1212, 1222
PspCI CACGTG 2 cut(s) 239, 282
PspFI CCCAGC 1 cut(s) 960
PspGI CCWGG 3 cut(s) 157, 1212, 1222
PspN4I GGNNCC 5 cut(s) 153, 234, 249, 893, 1287
PspPI GGNCC 7 cut(s) 221, 233, 248, 291, 599, 677, 1220
PspPPI RGGWCCY 1 cut(s) 599
PsuI RGATCY 2 cut(s) 30, 1005
RsaI GTAC 1 cut(s) 733
RsaNI GTAC 1 cut(s) 732
RseI CAYNNNNRTG 2 cut(s) 447, 704
Rsr2I CGGWCCG 1 cut(s) 291
RsrII CGGWCCG 1 cut(s) 291
SaqAI TTAA 4 cut(s) 561, 765, 804, 1001
SatI GCNGC 7 cut(s) 53, 146, 155, 191, 207, 210, 1014
Sau3AI GATC 6 cut(s) 30, 588, 871, 964, 991, 1005
Sau96I GGNCC 7 cut(s) 221, 233, 248, 291, 599, 677, 1220
SchI GAGTC 1 cut(s) 676
ScrFI CCNGG 4 cut(s) 159, 245, 1214, 1224
SduI GDGCHC 1 cut(s) 168
SfaNI GCATC 2 cut(s) 451, 1077
SfoI GGCGCC 1 cut(s) 153
SfuI TTCGAA 2 cut(s) 275, 786
SinI GGWCC 3 cut(s) 248, 291, 599
SmiMI CAYNNNNRTG 2 cut(s) 447, 704
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
SphI GCATGC 1 cut(s) 1128
Sse9I AATT 6 cut(s) 340, 358, 558, 778, 998, 1182
SspDI GGCGCC 1 cut(s) 151
SspMI CTAG 1 cut(s) 896
StyD4I CCNGG 4 cut(s) 157, 243, 1212, 1222
StyI CCWWGG 2 cut(s) 602, 699
TaaI ACNGT 5 cut(s) 413, 517, 772, 1119, 1141
TaiI ACGT 3 cut(s) 241, 284, 938
TaqI TCGA 2 cut(s) 275, 786
TasI AATT 6 cut(s) 340, 358, 558, 778, 998, 1182
TauI GCSGC 3 cut(s) 157, 193, 212
TfiI GAWTC 2 cut(s) 73, 1094
Tru1I TTAA 4 cut(s) 561, 765, 804, 1001
Tru9I TTAA 4 cut(s) 561, 765, 804, 1001
TscAI CASTG 3 cut(s) 551, 598, 1246
TseFI GTSAC 2 cut(s) 772, 809
TseI GCWGC 4 cut(s) 52, 145, 206, 1013
Tsp45I GTSAC 2 cut(s) 772, 809
TspGWI ACGGA 4 cut(s) 27, 186, 230, 940
TspRI CASTG 3 cut(s) 551, 598, 1246
VpaK11BI GGWCC 3 cut(s) 248, 291, 599
VspI ATTAAT 1 cut(s) 561
XapI RAATTY 1 cut(s) 1182
XceI RCATGY 1 cut(s) 1128
XcmI CCANNNNNNNNNTGG 1 cut(s) 1220
XmiI GTMKAC 3 cut(s) 9, 619, 913
XmnI GAANNNNTTC 1 cut(s) 257
XspI CTAG 1 cut(s) 896
Zsp2I ATGCAT 1 cut(s) 1092
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.