Rh3CG290200

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000488
Physical Location & Seq
Forward (+)
29429758 .. 29431872
2115 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG290200.1

Sequence Viewer

Length: 606 bp
ATGGAGAAGCAGGGAAAATCTATGGGGAAAGCATCTGATTCTGTTAATGTTATGGTTGAGAATAACACTGATACCCATAAAGGGAAAGCGGCCAAAGCAGTCTGCAAGTTCTGGGCAGATGGAAAGTGTGTAAGACGCGAAGGTGCCCTTATTTGCACAGTTGGTTCCGTGGAGATGGCTTTTCTTCCTTGGCAAAATTCCAAGGCCATAATTGTGCTTCTGGAGAGAAGTAGCAATCTTTATTCTCCTGCCAAAGATGAAACAGTTAGGGTTTGGGACTGCAATACAGGTCAATGCAGCAAGGCATGGAATATTGAGTCCAATGCTGAACTTACCCTAGCTGGACCTGTTGGTAAAGTCCATGCCATGGAAGTTGGGAATGATATGGAGGCATGCAACATTGAAAAAATCTACACTCACACGGAAGAACACGGTCTTCTTGCTCTCACTGGAATGTATGATGTTAAAGATAAACCATTCCTACTTTGCTCATCAAAAGACAATTCTGTCTGCATATATGATTTGCCATCCTTTGATGAGAAGGGAAGATTATTTGCAAAACGAGAAGTTCGGGCTATTCAAAGCATATGTAGAACTCACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04120 map03040 map04120
Pfam Domains
Protein Families
WD40 zf-CCCH

Protein Analysis

201

Amino Acids

22.27

Weight (kDa)

6.94

Isoelectric Point (pI)

41.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000488)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25440 AT4G25440 AT4G25440 AT5G51980 AT5G51980
fragaria_vesca FvH4_2g11580 FvH4_3g29280 FvH4_4g05980 FvH4_7g28880 FvH4_7g28880
malus_domestica MD01G1195600.v1.1 MD02G1195200.v1.1 MD07G1262400.v1.1
prunus_persica Prupe.2G102200_v2.0.a1 Prupe.2G102200_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G288900_v2.0.a1
pyrus_communis pycom01g20620 pycom02g15900 pycom07g24140
rosa_chinensis RchiOBHm_Chr1g0376561 RchiOBHm_Chr3g0483051 RchiOBHm_Chr3g0483061 RchiOBHm_Chr3g0483601 RchiOBHm_Chr3g0483611 RchiOBHm_Chr4g0402321 RchiOBHm_Chr6g0270771
rosa_laevigata RLG00000009464 RLG00000009486 RLG00000013770 RLG00000023264 RLG00000023325 RLG00000026601 RLG00000035049
rosa_multiflora Rmu_co8110388.1_g000001 Rmu_co8419409.1_g000001 Rmu_sc0000555.1_g000012 Rmu_sc0000642.1_g000020 Rmu_sc0001308.1_g000010 Rmu_sc0002963.1_g000021 Rmu_sc0004788.1_g000012 Rmu_sc0005594.1_g000015 Rmu_sc0022770.1_g000001
rosa_roxburghii Rroxscaffold_4G00282000 Rroxscaffold_5G00341940 Rroxscaffold_5G00341950 Rroxscaffold_6G00398950 Rroxscaffold_7G00197610
rosa_rugosa Rorug01G0396500 Rorug03G0207400 Rorug03G0346000 Rorug04G0166800 Rorug06G0056400 Rorug06G0056500
rosa_samantha Rh1AG412700 Rh1BG372400 Rh1BG372600 Rh1CG386200 Rh1CG386500 Rh1DG403300 Rh1DG403500 Rh3AG255500 Rh3AG255600 Rh3BG292600 Rh3CG290200 Rh3DG278800 Rh3DG286100 Rh4AG075500 Rh4AG111600 Rh4BG071900 Rh4BG072100 Rh4BG231300 Rh4CG080200 Rh4CG080300 Rh4DG069300 Rh4DG069500 Rh6AG175700 Rh6BG178900 Rh6CG175200 Rh6DG167500
rosa_wichuraiana Rw1G036190 Rw3G023110 Rw4G006070 Rw6G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 506
AccB1I GGYRCC 1 cut(s) 143
AccB7I CCANNNNNTGG 1 cut(s) 367
AccII CGCG 1 cut(s) 138
AciI CCGC 1 cut(s) 89
AcoI YGGCCR 1 cut(s) 90
AcsI RAATTY 1 cut(s) 196
AfiI CCNNNNNNNGG 2 cut(s) 81, 367
AgsI TTSAA 2 cut(s) 404, 581
AluBI AGCT 1 cut(s) 341
AluI AGCT 1 cut(s) 341
AoxI GGCC 2 cut(s) 90, 204
ApeKI GCWGC 1 cut(s) 297
ApoI RAATTY 1 cut(s) 196
AspS9I GGNCC 1 cut(s) 344
AvaII GGWCC 1 cut(s) 344
BaeGI GKGCMC 1 cut(s) 148
BanI GGYRCC 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 428
BbvI GCAGC 1 cut(s) 309
BccI CCATC 3 cut(s) 113, 169, 535
BfaI CTAG 1 cut(s) 338
BisI GCNGC 2 cut(s) 90, 298
BlsI GCNGC 2 cut(s) 91, 299
Bme18I GGWCC 1 cut(s) 344
BmgT120I GGNCC 1 cut(s) 344
BmiI GGNNCC 2 cut(s) 145, 166
BmsI GCATC 1 cut(s) 41
BpiI GAAGAC 1 cut(s) 428
BpmI CTGGAG 1 cut(s) 242
BsaJI CCNNGG 4 cut(s) 168, 188, 201, 366
Bsc4I CCNNNNNNNGG 2 cut(s) 81, 367
Bse1I ACTGG 1 cut(s) 454
BseDI CCNNGG 4 cut(s) 168, 188, 201, 366
BseGI GGATG 1 cut(s) 527
BseLI CCNNNNNNNGG 2 cut(s) 81, 367
BseNI ACTGG 1 cut(s) 454
BseSI GKGCMC 1 cut(s) 148
BseXI GCAGC 1 cut(s) 309
Bsh1236I CGCG 1 cut(s) 138
BshFI GGCC 2 cut(s) 92, 206
BshNI GGYRCC 1 cut(s) 143
BslFI GGGAC 1 cut(s) 290
BslI CCNNNNNNNGG 2 cut(s) 81, 367
BsmFI GGGAC 1 cut(s) 290
BsnI GGCC 2 cut(s) 92, 206
Bsp1286I GDGCHC 1 cut(s) 148
Bsp19I CCATGG 1 cut(s) 366
BspACI CCGC 1 cut(s) 89
BspANI GGCC 2 cut(s) 92, 206
BspFNI CGCG 1 cut(s) 138
BspLI GGNNCC 2 cut(s) 145, 166
BspT107I GGYRCC 1 cut(s) 143
BsrI ACTGG 1 cut(s) 454
BssECI CCNNGG 4 cut(s) 168, 188, 201, 366
BssT1I CCWWGG 3 cut(s) 188, 201, 366
Bst4CI ACNGT 3 cut(s) 160, 265, 434
BstC8I GCNNGC 1 cut(s) 394
BstDSI CCRYGG 2 cut(s) 168, 366
BstF5I GGATG 1 cut(s) 527
BstFNI CGCG 1 cut(s) 138
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstNSI RCATGY 1 cut(s) 396
BstSLI GKGCMC 1 cut(s) 148
BstUI CGCG 1 cut(s) 138
BstV1I GCAGC 1 cut(s) 309
BstV2I GAAGAC 1 cut(s) 428
BsuRI GGCC 2 cut(s) 92, 206
BtgI CCRYGG 2 cut(s) 168, 366
BtsCI GGATG 1 cut(s) 527
BtsIMutI CAGTG 2 cut(s) 66, 447
Cac8I GCNNGC 1 cut(s) 394
Cfr13I GGNCC 1 cut(s) 344
CseI GACGC 1 cut(s) 144
CviAII CATG 4 cut(s) 306, 362, 367, 393
CviJI RGCY 5 cut(s) 92, 179, 206, 341, 575
CviKI_1 RGCY 5 cut(s) 92, 179, 206, 341, 575
DrdI GACNNNNNNGTC 1 cut(s) 506
DseDI GACNNNNNNGTC 1 cut(s) 506
EaeI YGGCCR 1 cut(s) 90
Eco130I CCWWGG 3 cut(s) 188, 201, 366
Eco47I GGWCC 1 cut(s) 344
EcoT14I CCWWGG 3 cut(s) 188, 201, 366
ErhI CCWWGG 3 cut(s) 188, 201, 366
FaeI CATG 4 cut(s) 309, 365, 370, 396
FalI AAGNNNNNCTT 2 cut(s) 132, 164
FaqI GGGAC 1 cut(s) 290
FatI CATG 4 cut(s) 305, 361, 366, 392
FauNDI CATATG 1 cut(s) 587
Fnu4HI GCNGC 2 cut(s) 90, 298
FokI GGATG 1 cut(s) 514
Fsp4HI GCNGC 2 cut(s) 90, 298
FspBI CTAG 1 cut(s) 338
GluI GCNGC 2 cut(s) 90, 298
GsuI CTGGAG 1 cut(s) 242
HaeIII GGCC 2 cut(s) 92, 206
HgaI GACGC 1 cut(s) 144
Hin1II CATG 4 cut(s) 309, 365, 370, 396
HinfI GANTC 2 cut(s) 38, 317
Hpy188I TCNGA 1 cut(s) 37
Hpy188III TCNNGA 1 cut(s) 221
HpyAV CCTTC 2 cut(s) 134, 535
HpyCH4III ACNGT 3 cut(s) 160, 265, 434
HpyCH4V TGCA 7 cut(s) 105, 156, 282, 297, 396, 513, 557
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
Hsp92II CATG 4 cut(s) 309, 365, 370, 396
LpnPI CCDG 7 cut(s) 97, 206, 261, 273, 327, 360, 435
Lsp1109I GCAGC 1 cut(s) 309
LweI GCATC 1 cut(s) 41
MaeI CTAG 1 cut(s) 338
MboII GAAGA 4 cut(s) 176, 428, 437, 558
MhlI GDGCHC 1 cut(s) 148
MluCI AATT 3 cut(s) 196, 210, 502
MlyI GAGTC 1 cut(s) 326
MnlI CCTC 1 cut(s) 382
MseI TTAA 2 cut(s) 45, 465
MslI CAYNNNNRTG 2 cut(s) 212, 452
MvnI CGCG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 95
NcoI CCATGG 1 cut(s) 366
NdeI CATATG 1 cut(s) 587
NlaIII CATG 4 cut(s) 309, 365, 370, 396
NlaIV GGNNCC 2 cut(s) 145, 166
NspI RCATGY 1 cut(s) 396
PaeI GCATGC 1 cut(s) 396
PfeI GAWTC 1 cut(s) 38
PflMI CCANNNNNTGG 1 cut(s) 367
PkrI GCNGC 2 cut(s) 91, 299
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
PspN4I GGNNCC 2 cut(s) 145, 166
PspPI GGNCC 1 cut(s) 344
RseI CAYNNNNRTG 2 cut(s) 212, 452
SaqAI TTAA 2 cut(s) 45, 465
SatI GCNGC 2 cut(s) 90, 298
Sau96I GGNCC 1 cut(s) 344
SchI GAGTC 1 cut(s) 326
SduI GDGCHC 1 cut(s) 148
SetI ASST 4 cut(s) 145, 292, 343, 349
SfaNI GCATC 1 cut(s) 41
SinI GGWCC 1 cut(s) 344
SmiMI CAYNNNNRTG 2 cut(s) 212, 452
SphI GCATGC 1 cut(s) 396
Sse9I AATT 3 cut(s) 196, 210, 502
SsiI CCGC 1 cut(s) 89
SspI AATATT 1 cut(s) 313
SspMI CTAG 1 cut(s) 338
StyI CCWWGG 3 cut(s) 188, 201, 366
TaaI ACNGT 3 cut(s) 160, 265, 434
TasI AATT 3 cut(s) 196, 210, 502
TauI GCSGC 1 cut(s) 92
TfiI GAWTC 1 cut(s) 38
Tru1I TTAA 2 cut(s) 45, 465
Tru9I TTAA 2 cut(s) 45, 465
TscAI CASTG 2 cut(s) 73, 454
TseI GCWGC 1 cut(s) 297
TspDTI ATGAA 1 cut(s) 273
TspGWI ACGGA 2 cut(s) 157, 437
TspRI CASTG 2 cut(s) 73, 454
Van91I CCANNNNNTGG 1 cut(s) 367
VpaK11BI GGWCC 1 cut(s) 344
XapI RAATTY 1 cut(s) 196
XceI RCATGY 1 cut(s) 396
XspI CTAG 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.