MD07G1262400.v1.1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000488
Physical Location & Seq
Reverse (-)
33166446 .. 33170607
4162 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1262400.v1.1.491

Sequence Viewer

Length: 1305 bp
ATGGATGTAGACGGAGGGGGAAGCAAACGGGTCTTTCACAGACTGGGTGGGCCACAATCCGACCCATCAAAGAACCAGAAGGTATGCTACCATTGGAGAGCGGGCAAGTGCAATCGCCACCCTTGCCCTTTCCTCCACAGAGAGCTACCGGCCCCGCCGTCGCAGCAAGGTCTCAACGGGACGACCTCGACTAAGCGCCATCACGCCTTCGCCGCTGACACCGACGGTCCATCGTCACGGAATCGGGGTCCCAATAACTTCAATGGCGGGACTTCTTCGACGTGGGGTCGTACAGGAGGAGCAAATAGGGTGTTTGTTAGGAAGATGGAGAAAGTCTGTAATTTTTGGGTTCAGGGGAATTGCAGCTATGGGGATAAGTGTAAGTTCTTGCATTCTTGGAGTATGGGGGATAGCTTCAGCTTGTTGACGCAGCTTGAGGGGCATCAGGAGGTTGTTAGTGGGATTGCACTGTCTTCTGGGTCTGATAAGCTTTATACTGGGAGTAAGGATCAAACTGTGAGGGTTTGGGATTGCGCGTCTGGTCAGTGCCTGGGAGTTATTAATCTTGGCGGTGAAGTAGGGTGTATGATCAGTGAAGGTCCTTGGATTTTTGTTGGCATACCAGAAGCTGTAAAGGCATGGAACACCCAGACTAACTCTGAACTGAGTCTTAGTGGGCCTGTTGGGCAAGTTTATGCCATGGTTGTGGGAAATGATTTGCTCTTTGCTGGTACACAGGATGGTTCTATATTGGCATGGAAGTTTAATGCTGTTACTAATTGCTTTGAACCAGCTGCATCACTGAGAGGTCACACTCTTGCAGTTGTTTCATTAGTAGTTGGAGCAAATAGGCTCTACTCTGGTTCAATGGATCATTCTATAAGGGTCTGGAGCCTGGAAACTTTGCAGTGTATACAAACGCTAACGGAGCATACTGAAGTTGTCATGTCTGTTCTTTGCTGGGATCAGTTTCTTTTATCATGTTCCTTGGATCGACAATTAAAGGTCTGGGTTGCTACTCAAAGTGGAAACTTGGAAGCAACATATACTCACACGGAAGAACATGGTTTGATAACACTTTGTGGGATGCATGATTCAGAAGCCAAGCCAGTCTTACTGTGCGCTTGCAACGACAACACTGTCCGCATATATGATTTACCATCGTTTTCGGAGAGGGGTAAAATATTTTCAAAACAGGAGATAAGATCGATTCAGGTTGGCCCTGGTGGCTTGTTTTTCACGGGTGATGGAACCGGTCAAGTGAAAGTATGGAAATGGACTGAACCAGCTGCGGTCACTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
WD40 zf-CCCH

Protein Analysis

435

Amino Acids

47.23

Weight (kDa)

7.18

Isoelectric Point (pI)

29.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH_4 PF18044 111 - 131 1.1e-07 CCCH-type zinc finger
zf-CCCH PF00642 112 - 132 8.1e-07 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf_CCCH_4 PF18345 113 - 131 1.1e-07 Zinc finger domain
Beta-prop_WDR5 PF25175 131 - 186 1.8e-08 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 133 - 318 1.4e-22 THOC3 beta-propeller domain
WD40 PF00400 141 - 177 1.8e-07 WD domain, G-beta repeat
Beta-prop_WDR3_1st PF25173 141 - 184 5.2e-07 WDR3 first beta-propeller domain
EIF3I PF24805 143 - 191 6.2e-06 EIF3I
Beta-prop_EML_2 PF23414 153 - 342 3e-08 Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz PF24807 200 - 350 1.9e-09 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 203 - 386 3.2e-20 WDR3 first beta-propeller domain
WD40_WDHD1_1st PF24817 206 - 428 3.5e-12 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 211 - 388 1.3e-16 WDR5 beta-propeller domain
Beta-prop_IP5PC_F PF23754 233 - 315 2.2e-06 IP5P C-F beta-propeller
WD40_Prp19 PF24814 238 - 318 2e-06 Prp19 WD40 domain
WDR55 PF24796 238 - 427 2.4e-08 WDR55
Beta-prop_WDR3_2nd PF25172 262 - 385 6.7e-10 WDR3 second beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 280 - 388 1.6e-06 MABP1/WDR62 second WD40 domain
Beta-prop_TEP1_2nd PF25047 283 - 353 3.5e-06 TEP-1 second beta-propeller
WD40_Prp19 PF24814 283 - 430 1.2e-14 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 283 - 428 5.9e-15 THOC3 beta-propeller domain
WD40_CDC20-Fz PF24807 284 - 424 3.3e-08 CDC20/Fizzy WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000488)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25440 AT4G25440 AT4G25440 AT5G51980 AT5G51980
fragaria_vesca FvH4_2g11580 FvH4_3g29280 FvH4_4g05980 FvH4_7g28880 FvH4_7g28880
malus_domestica MD01G1195600.v1.1 MD02G1195200.v1.1 MD07G1262400.v1.1
prunus_persica Prupe.2G102200_v2.0.a1 Prupe.2G102200_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G288900_v2.0.a1
pyrus_communis pycom01g20620 pycom02g15900 pycom07g24140
rosa_chinensis RchiOBHm_Chr1g0376561 RchiOBHm_Chr3g0483051 RchiOBHm_Chr3g0483061 RchiOBHm_Chr3g0483601 RchiOBHm_Chr3g0483611 RchiOBHm_Chr4g0402321 RchiOBHm_Chr6g0270771
rosa_laevigata RLG00000009464 RLG00000009486 RLG00000013770 RLG00000023264 RLG00000023325 RLG00000026601 RLG00000035049
rosa_multiflora Rmu_co8110388.1_g000001 Rmu_co8419409.1_g000001 Rmu_sc0000555.1_g000012 Rmu_sc0000642.1_g000020 Rmu_sc0001308.1_g000010 Rmu_sc0002963.1_g000021 Rmu_sc0004788.1_g000012 Rmu_sc0005594.1_g000015 Rmu_sc0022770.1_g000001
rosa_roxburghii Rroxscaffold_4G00282000 Rroxscaffold_5G00341940 Rroxscaffold_5G00341950 Rroxscaffold_6G00398950 Rroxscaffold_7G00197610
rosa_rugosa Rorug01G0396500 Rorug03G0207400 Rorug03G0346000 Rorug04G0166800 Rorug06G0056400 Rorug06G0056500
rosa_samantha Rh1AG412700 Rh1BG372400 Rh1BG372600 Rh1CG386200 Rh1CG386500 Rh1DG403300 Rh1DG403500 Rh3AG255500 Rh3AG255600 Rh3BG292600 Rh3CG290200 Rh3DG278800 Rh3DG286100 Rh4AG075500 Rh4AG111600 Rh4BG071900 Rh4BG072100 Rh4BG231300 Rh4CG080200 Rh4CG080300 Rh4DG069300 Rh4DG069500 Rh6AG175700 Rh6BG178900 Rh6CG175200 Rh6DG167500
rosa_wichuraiana Rw1G036190 Rw3G023110 Rw4G006070 Rw6G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1139
AccBSI CCGCTC 1 cut(s) 101
AccI GTMKAC 2 cut(s) 9, 913
AccII CGCG 1 cut(s) 536
AciI CCGC 7 cut(s) 101, 155, 213, 267, 570, 1144, 1292
AclWI GGATC 4 cut(s) 516, 879, 972, 999
AcuI CTGAAG 2 cut(s) 400, 957
AdeI CACNNNGTG 1 cut(s) 1082
AfaI GTAC 2 cut(s) 292, 733
AgeI ACCGGT 1 cut(s) 1253
AgsI TTSAA 4 cut(s) 262, 788, 867, 1191
AhdI GACNNNNNGTC 1 cut(s) 285
AjiI CACGTC 1 cut(s) 282
AjnI CCWGG 3 cut(s) 549, 894, 1222
AluBI AGCT 9 cut(s) 145, 366, 414, 420, 433, 490, 629, 794, 1289
AluI AGCT 9 cut(s) 145, 366, 414, 420, 433, 490, 629, 794, 1289
Alw26I GTCTC 1 cut(s) 176
AlwI GGATC 4 cut(s) 516, 879, 972, 999
AlwNI CAGNNNCTG 2 cut(s) 550, 629
AoxI GGCC 4 cut(s) 50, 150, 677, 1219
ApeKI GCWGC 5 cut(s) 163, 363, 430, 794, 1289
AseI ATTAAT 1 cut(s) 561
AsiGI ACCGGT 1 cut(s) 1253
AspLEI GCGC 3 cut(s) 198, 536, 1124
AspS9I GGNCC 7 cut(s) 50, 151, 227, 248, 599, 677, 1220
AsuHPI GGTGA 2 cut(s) 584, 1256
AvaII GGWCC 3 cut(s) 227, 248, 599
BarI GAAGNNNNNNTAC 2 cut(s) 71, 103
BbsI GAAGAC 1 cut(s) 465
BbvI GCAGC 5 cut(s) 175, 375, 442, 781, 1276
BccI CCATC 7 cut(s) 73, 207, 238, 319, 734, 1168, 1241
BceAI ACGGC 1 cut(s) 142
BciT130I CCWGG 3 cut(s) 551, 896, 1224
BclI TGATCA 1 cut(s) 588
BcoDI GTCTC 1 cut(s) 176
BfoI RGCGCY 1 cut(s) 199
BglI GCCNNNNNGGC 2 cut(s) 685, 1227
BisI GCNGC 6 cut(s) 164, 213, 364, 431, 795, 1290
BlsI GCNGC 6 cut(s) 165, 214, 365, 432, 796, 1291
Bme1390I CCNGG 3 cut(s) 551, 896, 1224
Bme18I GGWCC 3 cut(s) 227, 248, 599
BmeRI GACNNNNNGTC 1 cut(s) 285
BmgBI CACGTC 1 cut(s) 282
BmgT120I GGNCC 7 cut(s) 50, 151, 227, 248, 599, 677, 1220
BmiI GGNNCC 5 cut(s) 153, 249, 250, 893, 1252
BmrFI CCNGG 3 cut(s) 551, 896, 1224
BmrI ACTGGG 2 cut(s) 53, 507
BmsI GCATC 3 cut(s) 451, 806, 1077
BmuI ACTGGG 2 cut(s) 53, 507
BpiI GAAGAC 1 cut(s) 465
BpmI CTGGAG 1 cut(s) 910
BpuEI CTTGAG 1 cut(s) 455
Bsa29I ATCGAT 1 cut(s) 1208
BsaI GGTCTC 1 cut(s) 176
BsaJI CCNNGG 5 cut(s) 550, 602, 699, 987, 1222
BsaWI WCCGGW 1 cut(s) 1253
Bse118I RCCGGY 2 cut(s) 148, 1253
Bse1I ACTGG 3 cut(s) 48, 502, 1109
BseBI CCWGG 3 cut(s) 551, 896, 1224
BseCI ATCGAT 1 cut(s) 1208
BseDI CCNNGG 5 cut(s) 550, 602, 699, 987, 1222
BseGI GGATG 3 cut(s) 10, 745, 1092
BseMII CTCAG 2 cut(s) 656, 794
BseNI ACTGG 3 cut(s) 48, 502, 1109
BseRI GAGGAG 1 cut(s) 312
BseXI GCAGC 5 cut(s) 175, 375, 442, 781, 1276
BseYI CCCAGC 1 cut(s) 960
Bsh1236I CGCG 1 cut(s) 536
BshFI GGCC 4 cut(s) 52, 152, 679, 1221
BshTI ACCGGT 1 cut(s) 1253
BshVI ATCGAT 1 cut(s) 1208
BsiSI CCGG 2 cut(s) 149, 1254
BslFI GGGAC 3 cut(s) 193, 234, 283
BsmAI GTCTC 1 cut(s) 176
BsmFI GGGAC 3 cut(s) 193, 234, 283
BsmI GAATGC 1 cut(s) 391
BsnI GGCC 4 cut(s) 52, 152, 679, 1221
Bso31I GGTCTC 1 cut(s) 176
Bsp143I GATC 6 cut(s) 508, 588, 871, 964, 991, 1205
Bsp19I CCATGG 1 cut(s) 699
BspACI CCGC 7 cut(s) 101, 155, 213, 267, 570, 1144, 1292
BspANI GGCC 4 cut(s) 52, 152, 679, 1221
BspCNI CTCAG 2 cut(s) 657, 795
BspDI ATCGAT 1 cut(s) 1208
BspFNI CGCG 1 cut(s) 536
BspLI GGNNCC 5 cut(s) 153, 249, 250, 893, 1252
BspPI GGATC 4 cut(s) 516, 879, 972, 999
BspTNI GGTCTC 1 cut(s) 176
BsrBI CCGCTC 1 cut(s) 101
BsrFI RCCGGY 2 cut(s) 148, 1253
BsrI ACTGG 3 cut(s) 48, 502, 1109
BssAI RCCGGY 2 cut(s) 148, 1253
BssECI CCNNGG 5 cut(s) 550, 602, 699, 987, 1222
BssMI GATC 6 cut(s) 508, 588, 871, 964, 991, 1205
BssNAI GTATAC 1 cut(s) 914
BssT1I CCWWGG 3 cut(s) 602, 699, 987
Bst1107I GTATAC 1 cut(s) 914
Bst2UI CCWGG 3 cut(s) 551, 896, 1224
Bst4CI ACNGT 5 cut(s) 227, 471, 517, 1119, 1141
BstC8I GCNNGC 2 cut(s) 103, 1126
BstDEI CTNAG 4 cut(s) 192, 665, 671, 803
BstDSI CCRYGG 1 cut(s) 699
BstF5I GGATG 3 cut(s) 10, 745, 1092
BstFNI CGCG 1 cut(s) 536
BstH2I RGCGCY 1 cut(s) 199
BstHHI GCGC 3 cut(s) 198, 536, 1124
BstKTI GATC 6 cut(s) 511, 591, 874, 967, 994, 1208
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 6 cut(s) 508, 588, 871, 964, 991, 1205
BstMWI GCNNNNNNNGC 9 cut(s) 123, 163, 212, 439, 635, 685, 928, 1227, 1298
BstNI CCWGG 3 cut(s) 551, 896, 1224
BstSCI CCNGG 3 cut(s) 549, 894, 1222
BstUI CGCG 1 cut(s) 536
BstV1I GCAGC 5 cut(s) 175, 375, 442, 781, 1276
BstV2I GAAGAC 1 cut(s) 465
BstXI CCANNNNNNTGG 1 cut(s) 706
BstZ17I GTATAC 1 cut(s) 914
Bsu15I ATCGAT 1 cut(s) 1208
BsuRI GGCC 4 cut(s) 52, 152, 679, 1221
BsuTUI ATCGAT 1 cut(s) 1208
BtgI CCRYGG 1 cut(s) 699
BtrI CACGTC 1 cut(s) 282
BtsCI GGATG 3 cut(s) 10, 745, 1092
BtsI GCAGTG 2 cut(s) 914, 1296
BtsIMutI CAGTG 7 cut(s) 467, 551, 598, 800, 914, 1137, 1296
Cac8I GCNNGC 2 cut(s) 103, 1126
CaiI CAGNNNCTG 2 cut(s) 550, 629
CfoI GCGC 3 cut(s) 198, 536, 1124
Cfr10I RCCGGY 2 cut(s) 148, 1253
Cfr13I GGNCC 7 cut(s) 50, 151, 227, 248, 599, 677, 1220
ClaI ATCGAT 1 cut(s) 1208
CseI GACGC 2 cut(s) 436, 525
Csp6I GTAC 2 cut(s) 291, 732
CspAI ACCGGT 1 cut(s) 1253
CviAII CATG 7 cut(s) 639, 700, 756, 946, 981, 1064, 1091
CviQI GTAC 2 cut(s) 291, 732
DdeI CTNAG 4 cut(s) 192, 665, 671, 803
DpnI GATC 6 cut(s) 510, 590, 873, 966, 993, 1207
DpnII GATC 6 cut(s) 508, 588, 871, 964, 991, 1205
DraIII CACNNNGTG 1 cut(s) 1082
DrdI GACNNNNNNGTC 1 cut(s) 1139
DriI GACNNNNNGTC 1 cut(s) 285
DseDI GACNNNNNNGTC 1 cut(s) 1139
Eam1105I GACNNNNNGTC 1 cut(s) 285
Eco130I CCWWGG 3 cut(s) 602, 699, 987
Eco31I GGTCTC 1 cut(s) 176
Eco47I GGWCC 3 cut(s) 227, 248, 599
Eco57I CTGAAG 2 cut(s) 400, 957
EcoO109I RGGNCCY 2 cut(s) 248, 599
EcoRII CCWGG 3 cut(s) 549, 894, 1222
EcoT14I CCWWGG 3 cut(s) 602, 699, 987
EcoT22I ATGCAT 1 cut(s) 1092
ErhI CCWWGG 3 cut(s) 602, 699, 987
FaeI CATG 7 cut(s) 642, 703, 759, 949, 984, 1067, 1094
FalI AAGNNNNNCTT 2 cut(s) 1097, 1129
FaqI GGGAC 3 cut(s) 193, 234, 283
FatI CATG 7 cut(s) 638, 699, 755, 945, 980, 1063, 1090
FauI CCCGC 3 cut(s) 94, 162, 260
FbaI TGATCA 1 cut(s) 588
FblI GTMKAC 2 cut(s) 9, 913
Fnu4HI GCNGC 6 cut(s) 164, 213, 364, 431, 795, 1290
FokI GGATG 3 cut(s) 17, 752, 1099
Fsp4HI GCNGC 6 cut(s) 164, 213, 364, 431, 795, 1290
GlaI GCGC 3 cut(s) 197, 535, 1123
GluI GCNGC 6 cut(s) 164, 213, 364, 431, 795, 1290
GsaI CCCAGC 1 cut(s) 964
GsuI CTGGAG 1 cut(s) 910
HaeII RGCGCY 1 cut(s) 199
HaeIII GGCC 4 cut(s) 52, 152, 679, 1221
HapII CCGG 2 cut(s) 149, 1254
HgaI GACGC 2 cut(s) 436, 525
HhaI GCGC 3 cut(s) 198, 536, 1124
Hin1II CATG 7 cut(s) 642, 703, 759, 949, 984, 1067, 1094
Hin6I GCGC 3 cut(s) 196, 534, 1122
HinP1I GCGC 3 cut(s) 196, 534, 1122
HincII GTYRAC 1 cut(s) 426
HindII GTYRAC 1 cut(s) 426
HindIII AAGCTT 1 cut(s) 488
HinfI GANTC 4 cut(s) 241, 667, 1094, 1210
HpaII CCGG 2 cut(s) 149, 1254
HphI GGTGA 2 cut(s) 584, 1256
Hpy166II GTNNAC 4 cut(s) 10, 426, 734, 914
Hpy188I TCNGA 5 cut(s) 61, 484, 661, 1099, 1171
Hpy188III TCNNGA 2 cut(s) 446, 889
Hpy8I GTNNAC 4 cut(s) 10, 426, 734, 914
Hpy99I CGWCG 3 cut(s) 163, 227, 283
HpyAV CCTTC 3 cut(s) 73, 217, 590
HpyCH4III ACNGT 5 cut(s) 227, 471, 517, 1119, 1141
HpyCH4IV ACGT 1 cut(s) 281
HpyCH4V TGCA 9 cut(s) 111, 363, 391, 467, 797, 821, 907, 1090, 1128
HpyF10VI GCNNNNNNNGC 9 cut(s) 123, 163, 212, 439, 635, 685, 928, 1227, 1298
HpyF3I CTNAG 4 cut(s) 192, 665, 671, 803
HpySE526I ACGT 1 cut(s) 281
Hsp92II CATG 7 cut(s) 642, 703, 759, 949, 984, 1067, 1094
HspAI GCGC 3 cut(s) 196, 534, 1122
KflI GGGWCCC 1 cut(s) 248
Ksp22I TGATCA 1 cut(s) 588
Kzo9I GATC 6 cut(s) 508, 588, 871, 964, 991, 1205
LmnI GCTCC 4 cut(s) 299, 842, 891, 928
Lsp1109I GCAGC 5 cut(s) 175, 375, 442, 781, 1276
LweI GCATC 3 cut(s) 451, 806, 1077
MaeII ACGT 1 cut(s) 281
MaeIII GTNAC 4 cut(s) 234, 772, 809, 1294
MalI GATC 6 cut(s) 510, 590, 873, 966, 993, 1207
MbiI CCGCTC 1 cut(s) 101
MboI GATC 6 cut(s) 508, 588, 871, 964, 991, 1205
MboII GAAGA 4 cut(s) 267, 334, 465, 1070
MluCI AATT 4 cut(s) 340, 358, 778, 998
MlyI GAGTC 1 cut(s) 676
MmeI TCCRAC 2 cut(s) 84, 820
MnlI CCTC 9 cut(s) 8, 143, 196, 290, 430, 442, 513, 800, 1167
Mph1103I ATGCAT 1 cut(s) 1092
MseI TTAA 3 cut(s) 561, 765, 1001
MslI CAYNNNNRTG 1 cut(s) 704
MspA1I CMGCKG 3 cut(s) 215, 794, 1289
MspI CCGG 2 cut(s) 149, 1254
MspR9I CCNGG 3 cut(s) 551, 896, 1224
Mva1269I GAATGC 1 cut(s) 391
MvaI CCWGG 3 cut(s) 551, 896, 1224
MvnI CGCG 1 cut(s) 536
MwoI GCNNNNNNNGC 9 cut(s) 123, 163, 212, 439, 635, 685, 928, 1227, 1298
NcoI CCATGG 1 cut(s) 699
NdeII GATC 6 cut(s) 508, 588, 871, 964, 991, 1205
NlaIII CATG 7 cut(s) 642, 703, 759, 949, 984, 1067, 1094
NlaIV GGNNCC 5 cut(s) 153, 249, 250, 893, 1252
NmuCI GTSAC 3 cut(s) 234, 809, 1294
NsiI ATGCAT 1 cut(s) 1092
PctI GAATGC 1 cut(s) 391
PfeI GAWTC 3 cut(s) 241, 1094, 1210
PinAI ACCGGT 1 cut(s) 1253
PkrI GCNGC 6 cut(s) 165, 214, 365, 432, 796, 1291
PleI GAGTC 1 cut(s) 675
PpsI GAGTC 1 cut(s) 675
PpuMI RGGWCCY 2 cut(s) 248, 599
PshBI ATTAAT 1 cut(s) 561
Psp5II RGGWCCY 2 cut(s) 248, 599
Psp6I CCWGG 3 cut(s) 549, 894, 1222
PspFI CCCAGC 1 cut(s) 960
PspGI CCWGG 3 cut(s) 549, 894, 1222
PspN4I GGNNCC 5 cut(s) 153, 249, 250, 893, 1252
PspPI GGNCC 7 cut(s) 50, 151, 227, 248, 599, 677, 1220
PspPPI RGGWCCY 2 cut(s) 248, 599
PstNI CAGNNNCTG 2 cut(s) 550, 629
PvuII CAGCTG 2 cut(s) 794, 1289
RsaI GTAC 2 cut(s) 292, 733
RsaNI GTAC 2 cut(s) 291, 732
RseI CAYNNNNRTG 1 cut(s) 704
SaqAI TTAA 3 cut(s) 561, 765, 1001
SatI GCNGC 6 cut(s) 164, 213, 364, 431, 795, 1290
Sau3AI GATC 6 cut(s) 508, 588, 871, 964, 991, 1205
Sau96I GGNCC 7 cut(s) 50, 151, 227, 248, 599, 677, 1220
SchI GAGTC 1 cut(s) 676
ScrFI CCNGG 3 cut(s) 551, 896, 1224
SfaNI GCATC 3 cut(s) 451, 806, 1077
SinI GGWCC 3 cut(s) 227, 248, 599
SmiMI CAYNNNNRTG 1 cut(s) 704
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
Sse9I AATT 4 cut(s) 340, 358, 778, 998
SsiI CCGC 7 cut(s) 101, 155, 213, 267, 570, 1144, 1292
SspI AATATT 1 cut(s) 1185
StyD4I CCNGG 3 cut(s) 549, 894, 1222
StyI CCWWGG 3 cut(s) 602, 699, 987
TaaI ACNGT 5 cut(s) 227, 471, 517, 1119, 1141
TaiI ACGT 1 cut(s) 284
TaqI TCGA 4 cut(s) 188, 278, 994, 1208
TasI AATT 4 cut(s) 340, 358, 778, 998
TauI GCSGC 1 cut(s) 215
TfiI GAWTC 3 cut(s) 241, 1094, 1210
Tru1I TTAA 3 cut(s) 561, 765, 1001
Tru9I TTAA 3 cut(s) 561, 765, 1001
TscAI CASTG 7 cut(s) 474, 551, 598, 807, 914, 1144, 1303
TseFI GTSAC 3 cut(s) 234, 809, 1294
TseI GCWGC 5 cut(s) 163, 363, 430, 794, 1289
Tsp45I GTSAC 3 cut(s) 234, 809, 1294
TspDTI ATGAA 1 cut(s) 819
TspGWI ACGGA 4 cut(s) 27, 253, 941, 1070
TspRI CASTG 7 cut(s) 474, 551, 598, 807, 914, 1144, 1303
VpaK11BI GGWCC 3 cut(s) 227, 248, 599
VspI ATTAAT 1 cut(s) 561
XmiI GTMKAC 2 cut(s) 9, 913
Zsp2I ATGCAT 1 cut(s) 1092
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.