Rorug06G0056500

Zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000488
Physical Location & Seq
Reverse (-)
7698532 .. 7705724
7193 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0056500.1

Sequence Viewer

Length: 1893 bp
ATGGAGCTTCAGAGATCAGCGGTGGGACTCTTTCTAGGGTTTCTGGTCCTGACGATGGCGCCTTTATCGATGGGGAGGTTCGTGGTGGAGAAGAACAGCTTGAGGGTGACGTCACCGGATAAAATCAAAGGGAAATATGACAGTGCCATTGGCAACTTTGGGCTTCCTCAGTATGGAGGGAGCATGTCTGGTGCTGTTATATATCCAAAGGAGAATCAGAAGGGGTGTAAGGAGTTCTCGGAGTTTGGGCTTTCGTACAAATCCGATCCCGGAGCTCTGCCGACGTTTCTGTTGGTCGATCGTGGAGATTGCTTCTTTGCCTTGAAGGTTTGGAATGCCCAGAAGGCTGGAGCTTCTGCAGTCCTTGTCGCTGATGATATTGAGGAGGCGTTAATAACTATGGACACACCAGAAGAAGATATTTCAACTGCCAAATACATTGAAAACATAACTATACCATCTGCACTCATTGAAAAAAGTTTTGGTCAAACATTGAAGAAGGCCATCAGTTCTGGTGATATGGTGAATGTGTACCTTGACTGGAGAGAATCTGTTCCTCACCCAGATGACCGTGTGGAATATGAACTATGGACCAACAGTAATGATGAATGTGGGGTTAAGTGTGACATGTTGATGGAATTTACAAAGGAGTTTAGGGGTGCAGCCCAGATACTTGAAAAAGGGGGTTACACTCAGTTCACACCGCATTATATAACTTGGTACTGTCCTAAGGCATTCACCTTGAGCAAACAGTGCAAATCTCAGTGTATCAATCATGGAAGATATTGTGCTCCTGACCCTGAACAAGACTTCAGCACTGGTTACGAAGGGAAAGATGTGGTTCTTGAAAATTTAAGGCAGCTGTGTGTTTTTAAAGTAGCAAATGAGACTCGAAAGCCTTGGGTATGGTGGGACTATGTGACTGATTTTCAAATCAGATGTCCAATGAAAGAGAAAAAATACAACAAGGAATGTGCTGATGCTGTCATTAAGTCTCTCGGGCTTGATAGTAAGAAGATCGACAAGTGTATGGGAAACTCAGATGCAGACTCTGAAAATCCTGTTCTGAAAGAGGAGCAAGATGCTCAGGTTGGGAAGGGAACAAGAGGTGATGTAACCATATTGCCTACACTTGTTGTCAATAATCGACAATACCGAGGAAAGTTGGCGAAAAGTGCAGTTCTGAAGGCCATCTGTTCTGGTTTTGAAGAAACTACTGAGCCAGCTGTTTGCTTGAGTACTGATGTTGAGACAAATGAGTGTTTGGACAATAATGGTGGTTGCTGGCAAAATAAAGCTGCCAACATTACAGCCTGCAAGGATACCTTTCGTGGGAGGGTATGTGAGTGCCCTCTCGTTGATGGTGTGCAGTTCAAAGGAGATGGTTACACTACCTGTGAAGCAAGTGGGCCTGGGAGGTGCAAGGTAAACAATGGAGGTTGTTGGCATGAAGCTCGAGATGGGCATGCATTCTCTGCTTGTACAGATGATGGAGGGGTGCAATGCAAGTGTCCTCTTGGGTTTAAAGGTGATGGTGTGAAAACTTGTGAAGATATCGATGAATGCAAAGAGAAGAAAGCCTGTCAGTGCCCTGAATGCTCCTGTAAAAATACCTGGGGAAGTTATGACTGCTCATGTAGTGGAAATCTTTTGTATATCAAAGATCATGACACCTGCATAAGCAAGACTTCTGGAGGATCAAAATCATCTGCATGGGCTGCTGTGTGGGTTATTTTAATTGGCTTGGCTATGGCTTCTGGTGGGGCATATCTTGTGTACAAATATCGGTTACGGTCATACATGGATTCAGAAATTAGAGCTATAATGGCACAGTATATGCCTCTGGACAGCCAAGCTGAAGTTCCCAATCATGTGAATGATGAGCATGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
WD40 zf-CCCH

Protein Analysis

630

Amino Acids

69.55

Weight (kDa)

5.31

Isoelectric Point (pI)

35.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PA PF02225 63 - 165 6.4e-14 PA domain
VSR_TRX PF25011 192 - 399 2.7e-104 Vacuolar sorting receptor thioredoxin-like domain
cEGF PF12662 500 - 521 1.2e-06 Complement Clr-like EGF-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000488)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25440 AT4G25440 AT4G25440 AT5G51980 AT5G51980
fragaria_vesca FvH4_2g11580 FvH4_3g29280 FvH4_4g05980 FvH4_7g28880 FvH4_7g28880
malus_domestica MD01G1195600.v1.1 MD02G1195200.v1.1 MD07G1262400.v1.1
prunus_persica Prupe.2G102200_v2.0.a1 Prupe.2G102200_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G288900_v2.0.a1
pyrus_communis pycom01g20620 pycom02g15900 pycom07g24140
rosa_chinensis RchiOBHm_Chr1g0376561 RchiOBHm_Chr3g0483051 RchiOBHm_Chr3g0483061 RchiOBHm_Chr3g0483601 RchiOBHm_Chr3g0483611 RchiOBHm_Chr4g0402321 RchiOBHm_Chr6g0270771
rosa_laevigata RLG00000009464 RLG00000009486 RLG00000013770 RLG00000023264 RLG00000023325 RLG00000026601 RLG00000035049
rosa_multiflora Rmu_co8110388.1_g000001 Rmu_co8419409.1_g000001 Rmu_sc0000555.1_g000012 Rmu_sc0000642.1_g000020 Rmu_sc0001308.1_g000010 Rmu_sc0002963.1_g000021 Rmu_sc0004788.1_g000012 Rmu_sc0005594.1_g000015 Rmu_sc0022770.1_g000001
rosa_roxburghii Rroxscaffold_4G00282000 Rroxscaffold_5G00341940 Rroxscaffold_5G00341950 Rroxscaffold_6G00398950 Rroxscaffold_7G00197610
rosa_rugosa Rorug01G0396500 Rorug03G0207400 Rorug03G0346000 Rorug04G0166800 Rorug06G0056400 Rorug06G0056500
rosa_samantha Rh1AG412700 Rh1BG372400 Rh1BG372600 Rh1CG386200 Rh1CG386500 Rh1DG403300 Rh1DG403500 Rh3AG255500 Rh3AG255600 Rh3BG292600 Rh3CG290200 Rh3DG278800 Rh3DG286100 Rh4AG075500 Rh4AG111600 Rh4BG071900 Rh4BG072100 Rh4BG231300 Rh4CG080200 Rh4CG080300 Rh4DG069300 Rh4DG069500 Rh6AG175700 Rh6BG178900 Rh6CG175200 Rh6DG167500
rosa_wichuraiana Rw1G036190 Rw3G023110 Rw4G006070 Rw6G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1682
AatII GACGTC 1 cut(s) 113
Acc36I ACCTGC 1 cut(s) 1682
AccB1I GGYRCC 1 cut(s) 58
AciI CCGC 2 cut(s) 20, 704
AclWI GGATC 2 cut(s) 260, 1705
AcsI RAATTY 2 cut(s) 638, 850
AcuI CTGAAG 3 cut(s) 796, 1205, 1878
AcyI GRCGYC 2 cut(s) 59, 110
AfaI GTAC 6 cut(s) 257, 533, 722, 1240, 1483, 1778
AfiI CCNNNNNNNGG 3 cut(s) 55, 173, 1332
AflIII ACRYGT 1 cut(s) 627
AjnI CCWGG 2 cut(s) 1411, 1613
AjuI GAANNNNNNNTTGG 4 cut(s) 465, 497, 1845, 1877
Alw21I GWGCWC 2 cut(s) 277, 793
Alw26I GTCTC 3 cut(s) 881, 999, 1244
AlwI GGATC 2 cut(s) 260, 1705
AlwNI CAGNNNCTG 1 cut(s) 1052
Ama87I CYCGRG 2 cut(s) 998, 1455
AoxI GGCC 3 cut(s) 501, 1188, 1409
ApeKI GCWGC 4 cut(s) 662, 859, 1298, 1718
ApoI RAATTY 2 cut(s) 638, 850
ArsI GACNNNNNNTTYG 2 cut(s) 925, 957
Asp700I GAANNNNTTC 1 cut(s) 552
AspLEI GCGC 1 cut(s) 61
AspS9I GGNCC 3 cut(s) 46, 591, 1409
AsuC2I CCSGG 1 cut(s) 270
AsuHPI GGTGA 8 cut(s) 105, 118, 527, 535, 551, 730, 1121, 1541
AvaI CYCGRG 2 cut(s) 998, 1455
AvaII GGWCC 2 cut(s) 46, 591
AxyI CCTNAGG 1 cut(s) 729
BaeGI GKGCMC 2 cut(s) 1352, 1592
BanI GGYRCC 1 cut(s) 58
BanII GRGCYC 1 cut(s) 277
Bbv12I GWGCWC 2 cut(s) 277, 793
BbvI GCAGC 4 cut(s) 674, 871, 1285, 1705
BcgI CGANNNNNNTGC 2 cut(s) 1436, 1470
BciT130I CCWGG 2 cut(s) 1413, 1615
BciVI GTATCC 1 cut(s) 1315
BcnI CCSGG 1 cut(s) 270
BcoDI GTCTC 3 cut(s) 881, 999, 1244
BfaI CTAG 1 cut(s) 35
BfmI CTRYAG 1 cut(s) 357
BfoI RGCGCY 1 cut(s) 62
BfuAI ACCTGC 1 cut(s) 1682
BfuI GTATCC 1 cut(s) 1315
BglI GCCNNNNNGGC 1 cut(s) 344
BisI GCNGC 4 cut(s) 663, 860, 1299, 1719
BlsI GCNGC 4 cut(s) 664, 861, 1300, 1720
BmcAI AGTACT 1 cut(s) 1240
Bme1390I CCNGG 3 cut(s) 270, 1413, 1615
Bme18I GGWCC 2 cut(s) 46, 591
BmeT110I CYCGRG 2 cut(s) 998, 1455
BmgT120I GGNCC 3 cut(s) 46, 591, 1409
BmiI GGNNCC 1 cut(s) 60
BmrFI CCNGG 3 cut(s) 270, 1413, 1615
BmsI GCATC 3 cut(s) 970, 1033, 1072
BpmI CTGGAG 3 cut(s) 369, 562, 1713
Bpu10I CCTNAGC 1 cut(s) 1086
BpuEI CTTGAG 3 cut(s) 121, 763, 1255
BpuMI CCSGG 1 cut(s) 270
Bsa29I ATCGAT 2 cut(s) 68, 1557
BsaBI GATNNNNATC 1 cut(s) 1702
BsaHI GRCGYC 2 cut(s) 59, 110
BsaJI CCNNGG 4 cut(s) 899, 1156, 1412, 1614
BsaWI WCCGGW 1 cut(s) 115
BsaXI ACNNNNNCTCC 2 cut(s) 1327, 1357
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 173, 1332
Bse1I ACTGG 2 cut(s) 545, 823
Bse21I CCTNAGG 1 cut(s) 729
Bse3DI GCAATG 1 cut(s) 1508
Bse8I GATNNNNATC 1 cut(s) 1702
BseBI CCWGG 2 cut(s) 1413, 1615
BseCI ATCGAT 2 cut(s) 68, 1557
BseDI CCNNGG 4 cut(s) 899, 1156, 1412, 1614
BseJI GATNNNNATC 1 cut(s) 1702
BseLI CCNNNNNNNGG 3 cut(s) 55, 173, 1332
BseMI GCAATG 1 cut(s) 1508
BseMII CTCAG 6 cut(s) 182, 707, 776, 1053, 1100, 1209
BseNI ACTGG 2 cut(s) 545, 823
BseRI GAGGAG 2 cut(s) 398, 1088
BseSI GKGCMC 2 cut(s) 1352, 1592
BseXI GCAGC 4 cut(s) 674, 871, 1285, 1705
BsgI GTGCAG 4 cut(s) 447, 681, 1197, 1388
Bsh1285I CGRYCG 1 cut(s) 301
BshFI GGCC 3 cut(s) 503, 1190, 1411
BshNI GGYRCC 1 cut(s) 58
BshVI ATCGAT 2 cut(s) 68, 1557
BsiEI CGRYCG 1 cut(s) 301
BsiHKAI GWGCWC 2 cut(s) 277, 793
BsiHKCI CYCGRG 2 cut(s) 998, 1455
BsiSI CCGG 2 cut(s) 116, 270
BslFI GGGAC 2 cut(s) 39, 926
BslI CCNNNNNNNGG 3 cut(s) 55, 173, 1332
BsmAI GTCTC 3 cut(s) 881, 999, 1244
BsmFI GGGAC 2 cut(s) 39, 926
BsmI GAATGC 5 cut(s) 340, 734, 1469, 1568, 1601
BsnI GGCC 3 cut(s) 503, 1190, 1411
BsoBI CYCGRG 2 cut(s) 998, 1455
Bsp1286I GDGCHC 4 cut(s) 277, 793, 1352, 1592
Bsp1407I TGTACA 2 cut(s) 1481, 1776
Bsp143I GATC 6 cut(s) 14, 265, 298, 1017, 1663, 1697
BspACI CCGC 2 cut(s) 20, 704
BspANI GGCC 3 cut(s) 503, 1190, 1411
BspCNI CTCAG 6 cut(s) 181, 706, 775, 1052, 1099, 1210
BspDI ATCGAT 2 cut(s) 68, 1557
BspHI TCATGA 1 cut(s) 1666
BspLI GGNNCC 1 cut(s) 60
BspMAI CTGCAG 1 cut(s) 361
BspMI ACCTGC 1 cut(s) 1682
BspPI GGATC 2 cut(s) 260, 1705
BspT107I GGYRCC 1 cut(s) 58
BsrDI GCAATG 1 cut(s) 1508
BsrGI TGTACA 2 cut(s) 1481, 1776
BsrI ACTGG 2 cut(s) 545, 823
BssECI CCNNGG 4 cut(s) 899, 1156, 1412, 1614
BssMI GATC 6 cut(s) 14, 265, 298, 1017, 1663, 1697
BssNI GRCGYC 2 cut(s) 59, 110
BssT1I CCWWGG 1 cut(s) 899
Bst2UI CCWGG 2 cut(s) 1413, 1615
Bst4CI ACNGT 7 cut(s) 143, 572, 599, 725, 753, 1794, 1833
BstACI GRCGYC 2 cut(s) 59, 110
BstAPI GCANNNNNTGC 3 cut(s) 753, 1475, 1718
BstAUI TGTACA 2 cut(s) 1481, 1776
BstC8I GCNNGC 5 cut(s) 1224, 1286, 1315, 1467, 1887
BstDEI CTNAG 7 cut(s) 168, 693, 729, 762, 1039, 1086, 1218
BstH2I RGCGCY 1 cut(s) 62
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 6 cut(s) 17, 268, 301, 1020, 1666, 1700
BstMAI GTCTC 3 cut(s) 881, 999, 1244
BstMBI GATC 6 cut(s) 14, 265, 298, 1017, 1663, 1697
BstMCI CGRYCG 1 cut(s) 301
BstMWI GCNNNNNNNGC 7 cut(s) 344, 753, 1175, 1475, 1596, 1718, 1826
BstNI CCWGG 2 cut(s) 1413, 1615
BstNSI RCATGY 4 cut(s) 187, 631, 1469, 1889
BstSCI CCNGG 3 cut(s) 268, 1411, 1613
BstSFI CTRYAG 1 cut(s) 357
BstSLI GKGCMC 2 cut(s) 1352, 1592
BstV1I GCAGC 4 cut(s) 674, 871, 1285, 1705
BstXI CCANNNNNNTGG 1 cut(s) 347
Bsu15I ATCGAT 2 cut(s) 68, 1557
Bsu36I CCTNAGG 1 cut(s) 729
BsuI GTATCC 1 cut(s) 1315
BsuRI GGCC 3 cut(s) 503, 1190, 1411
BsuTUI ATCGAT 2 cut(s) 68, 1557
BtsIMutI CAGTG 5 cut(s) 148, 758, 770, 816, 1592
BveI ACCTGC 1 cut(s) 1682
Cac8I GCNNGC 5 cut(s) 1224, 1286, 1315, 1467, 1887
CaiI CAGNNNCTG 1 cut(s) 1052
CciI TCATGA 1 cut(s) 1666
CfoI GCGC 1 cut(s) 61
Cfr13I GGNCC 3 cut(s) 46, 591, 1409
ClaI ATCGAT 2 cut(s) 68, 1557
Csp6I GTAC 6 cut(s) 256, 532, 721, 1239, 1482, 1777
CspCI CAANNNNNGTGG 2 cut(s) 1258, 1293
CviQI GTAC 6 cut(s) 256, 532, 721, 1239, 1482, 1777
DdeI CTNAG 7 cut(s) 168, 693, 729, 762, 1039, 1086, 1218
DinI GGCGCC 1 cut(s) 60
DpnI GATC 6 cut(s) 16, 267, 300, 1019, 1665, 1699
DpnII GATC 6 cut(s) 14, 265, 298, 1017, 1663, 1697
DraI TTTAAA 2 cut(s) 874, 1525
Ecl136II GAGCTC 1 cut(s) 275
Eco130I CCWWGG 1 cut(s) 899
Eco24I GRGCYC 1 cut(s) 277
Eco32I GATATC 1 cut(s) 1555
Eco47I GGWCC 2 cut(s) 46, 591
Eco53kI GAGCTC 1 cut(s) 275
Eco57I CTGAAG 3 cut(s) 796, 1205, 1878
Eco81I CCTNAGG 1 cut(s) 729
Eco88I CYCGRG 2 cut(s) 998, 1455
EcoICRI GAGCTC 1 cut(s) 275
EcoRII CCWGG 2 cut(s) 1411, 1613
EcoRV GATATC 1 cut(s) 1555
EcoT14I CCWWGG 1 cut(s) 899
EcoT22I ATGCAT 1 cut(s) 1471
EcoT38I GRGCYC 1 cut(s) 277
EgeI GGCGCC 1 cut(s) 60
EheI GGCGCC 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 899
FalI AAGNNNNNCTT 6 cut(s) 83, 115, 1310, 1342, 1672, 1704
FaqI GGGAC 2 cut(s) 39, 926
Fnu4HI GCNGC 4 cut(s) 663, 860, 1299, 1719
FriOI GRGCYC 1 cut(s) 277
Fsp4HI GCNGC 4 cut(s) 663, 860, 1299, 1719
FspBI CTAG 1 cut(s) 35
GlaI GCGC 1 cut(s) 60
GluI GCNGC 4 cut(s) 663, 860, 1299, 1719
GsuI CTGGAG 3 cut(s) 369, 562, 1713
HaeII RGCGCY 1 cut(s) 62
HaeIII GGCC 3 cut(s) 503, 1190, 1411
HapII CCGG 2 cut(s) 116, 270
HhaI GCGC 1 cut(s) 61
Hin1I GRCGYC 2 cut(s) 59, 110
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HinfI GANTC 6 cut(s) 27, 214, 548, 889, 1049, 1805
HpaII CCGG 2 cut(s) 116, 270
HphI GGTGA 8 cut(s) 105, 118, 527, 535, 551, 730, 1121, 1541
Hpy166II GTNNAC 4 cut(s) 532, 699, 1429, 1777
Hpy188III TCNNGA 7 cut(s) 49, 794, 845, 1457, 1667, 1692, 1844
Hpy8I GTNNAC 4 cut(s) 532, 699, 1429, 1777
Hpy99I CGWCG 1 cut(s) 286
HpyAV CCTTC 7 cut(s) 214, 319, 337, 493, 821, 1090, 1180
HpyCH4III ACNGT 7 cut(s) 143, 572, 599, 725, 753, 1794, 1833
HpyCH4IV ACGT 2 cut(s) 110, 284
HpyF10VI GCNNNNNNNGC 7 cut(s) 344, 753, 1175, 1475, 1596, 1718, 1826
HpyF3I CTNAG 7 cut(s) 168, 693, 729, 762, 1039, 1086, 1218
HpySE526I ACGT 2 cut(s) 110, 284
Hsp92I GRCGYC 2 cut(s) 59, 110
HspAI GCGC 1 cut(s) 59
KasI GGCGCC 1 cut(s) 58
Kzo9I GATC 6 cut(s) 14, 265, 298, 1017, 1663, 1697
LmnI GCTCC 7 cut(s) 4, 180, 272, 350, 796, 1075, 1604
Lsp1109I GCAGC 4 cut(s) 674, 871, 1285, 1705
LweI GCATC 3 cut(s) 970, 1033, 1072
MaeI CTAG 1 cut(s) 35
MaeII ACGT 2 cut(s) 110, 284
MaeIII GTNAC 9 cut(s) 106, 111, 623, 686, 821, 919, 1114, 1385, 1788
MalI GATC 6 cut(s) 16, 267, 300, 1019, 1665, 1699
MboI GATC 6 cut(s) 14, 265, 298, 1017, 1663, 1697
MboII GAAGA 9 cut(s) 103, 425, 428, 508, 792, 1027, 1220, 1562, 1585
MhlI GDGCHC 4 cut(s) 277, 793, 1352, 1592
MluCI AATT 4 cut(s) 638, 850, 1737, 1812
Mly113I GGCGCC 1 cut(s) 59
MlyI GAGTC 3 cut(s) 21, 883, 1043
Mph1103I ATGCAT 1 cut(s) 1471
MroXI GAANNNNTTC 1 cut(s) 552
MseI TTAA 7 cut(s) 392, 618, 854, 873, 990, 1524, 1736
MslI CAYNNNNRTG 4 cut(s) 564, 632, 1711, 1875
MspA1I CMGCKG 3 cut(s) 20, 862, 1226
MspI CCGG 2 cut(s) 116, 270
MspR9I CCNGG 3 cut(s) 270, 1413, 1615
Mva1269I GAATGC 5 cut(s) 340, 734, 1469, 1568, 1601
MvaI CCWGG 2 cut(s) 1413, 1615
MwoI GCNNNNNNNGC 7 cut(s) 344, 753, 1175, 1475, 1596, 1718, 1826
NarI GGCGCC 1 cut(s) 59
NciI CCSGG 1 cut(s) 270
NdeII GATC 6 cut(s) 14, 265, 298, 1017, 1663, 1697
NlaIV GGNNCC 1 cut(s) 60
NmuCI GTSAC 4 cut(s) 106, 111, 623, 919
NsiI ATGCAT 1 cut(s) 1471
NspI RCATGY 4 cut(s) 187, 631, 1469, 1889
PaeI GCATGC 2 cut(s) 1469, 1889
PaeR7I CTCGAG 1 cut(s) 1455
PagI TCATGA 1 cut(s) 1666
PaqCI CACCTGC 1 cut(s) 1682
PciI ACATGT 1 cut(s) 627
PcsI WCGNNNNNNNCGW 1 cut(s) 1153
PctI GAATGC 5 cut(s) 340, 734, 1469, 1568, 1601
PdmI GAANNNNTTC 1 cut(s) 552
PfeI GAWTC 3 cut(s) 214, 548, 1805
PfoI TCCNGGA 1 cut(s) 268
PkrI GCNGC 4 cut(s) 664, 861, 1300, 1720
Ple19I CGATCG 1 cut(s) 301
PleI GAGTC 3 cut(s) 21, 883, 1043
PluTI GGCGCC 1 cut(s) 62
PpsI GAGTC 3 cut(s) 21, 883, 1043
PscI ACATGT 1 cut(s) 627
Psp124BI GAGCTC 1 cut(s) 277
Psp6I CCWGG 2 cut(s) 1411, 1613
PspGI CCWGG 2 cut(s) 1411, 1613
PspN4I GGNNCC 1 cut(s) 60
PspPI GGNCC 3 cut(s) 46, 591, 1409
PstI CTGCAG 1 cut(s) 361
PstNI CAGNNNCTG 1 cut(s) 1052
PvuI CGATCG 1 cut(s) 301
PvuII CAGCTG 2 cut(s) 862, 1226
RsaI GTAC 6 cut(s) 257, 533, 722, 1240, 1483, 1778
RsaNI GTAC 6 cut(s) 256, 532, 721, 1239, 1482, 1777
RseI CAYNNNNRTG 4 cut(s) 564, 632, 1711, 1875
SacI GAGCTC 1 cut(s) 277
SaqAI TTAA 7 cut(s) 392, 618, 854, 873, 990, 1524, 1736
SatI GCNGC 4 cut(s) 663, 860, 1299, 1719
Sau3AI GATC 6 cut(s) 14, 265, 298, 1017, 1663, 1697
Sau96I GGNCC 3 cut(s) 46, 591, 1409
ScaI AGTACT 1 cut(s) 1240
SchI GAGTC 3 cut(s) 21, 883, 1043
ScrFI CCNGG 3 cut(s) 270, 1413, 1615
SduI GDGCHC 4 cut(s) 277, 793, 1352, 1592
SfaNI GCATC 3 cut(s) 970, 1033, 1072
SfcI CTRYAG 1 cut(s) 357
SfoI GGCGCC 1 cut(s) 60
Sfr274I CTCGAG 1 cut(s) 1455
SinI GGWCC 2 cut(s) 46, 591
SlaI CTCGAG 1 cut(s) 1455
SmiMI CAYNNNNRTG 4 cut(s) 564, 632, 1711, 1875
SmlI CTYRAG 4 cut(s) 100, 742, 1234, 1455
SmoI CTYRAG 4 cut(s) 100, 742, 1234, 1455
SphI GCATGC 2 cut(s) 1469, 1889
Sse9I AATT 4 cut(s) 638, 850, 1737, 1812
SsiI CCGC 2 cut(s) 20, 704
SspDI GGCGCC 1 cut(s) 58
SspMI CTAG 1 cut(s) 35
SstI GAGCTC 1 cut(s) 277
StyD4I CCNGG 3 cut(s) 268, 1411, 1613
StyI CCWWGG 1 cut(s) 899
TaaI ACNGT 7 cut(s) 143, 572, 599, 725, 753, 1794, 1833
TaiI ACGT 2 cut(s) 113, 287
TaqI TCGA 7 cut(s) 68, 297, 892, 1020, 1147, 1456, 1557
TasI AATT 4 cut(s) 638, 850, 1737, 1812
TatI WGTACW 3 cut(s) 1238, 1481, 1776
TfiI GAWTC 3 cut(s) 214, 548, 1805
Tru1I TTAA 7 cut(s) 392, 618, 854, 873, 990, 1524, 1736
Tru9I TTAA 7 cut(s) 392, 618, 854, 873, 990, 1524, 1736
TscAI CASTG 5 cut(s) 148, 758, 770, 823, 1592
TseFI GTSAC 4 cut(s) 106, 111, 623, 919
TseI GCWGC 4 cut(s) 662, 859, 1298, 1718
Tsp45I GTSAC 4 cut(s) 106, 111, 623, 919
TspDTI ATGAA 5 cut(s) 597, 621, 962, 1464, 1575
TspRI CASTG 5 cut(s) 148, 758, 770, 823, 1592
VpaK11BI GGWCC 2 cut(s) 46, 591
XapI RAATTY 2 cut(s) 638, 850
XceI RCATGY 4 cut(s) 187, 631, 1469, 1889
XhoI CTCGAG 1 cut(s) 1455
XmnI GAANNNNTTC 1 cut(s) 552
XspI CTAG 1 cut(s) 35
ZraI GACGTC 1 cut(s) 111
ZrmI AGTACT 1 cut(s) 1240
Zsp2I ATGCAT 1 cut(s) 1471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.