FvH4_7g28880

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000488
Physical Location & Seq
Reverse (-)
21332955 .. 21336976
4022 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g28880.t2

Sequence Viewer

Length: 1320 bp
ATGGATGTAGAAGGAGGCGGAAGCAAGCGGATCTTCAATAGATTGGGCGGGCCGGCGCAACCCGACCCGAACAAGAACCAGAAAGTATGCTACCATTGGAGAGCGGGCAAGTGCAACCGCCACCCTTGCCCTTATCTCCACCGCGAGCTACCTTCGCCGCCTTCGCACGGCCTCAACGGGACGGCGTCGTCCAAGCGGCAACACGGCTTCGCCGCCAACACCGATGGCCCGTCGGGGCCACGTGGCCGGGGTCCGAATAACTTCAGCGGCGGAGGGTCGAACACGTGGGGGAGGAGCGGCGGCGGCGGCGGAGGAGGGAATAGGGTTTTCGTTAGGAAGATGGATAAGGTTTGTAATTATTGGGTTCAGGGGAACTGTAGCTATGGGGATAGGTGTAAGTTCTTGCATTCTTGGAGCACTGGGGACTGTGTTAGCTTGTTGACGACGCTTGAGGGGCATCAGAATGTTGTTAGTGGGATTGCATTGCCTTCGGGGTCGGATAAGCTTTACACTGGGAGCAAGGATGAGACTGTGAGAGTGTGGGATTGCCAATCTGGTCAGTGCCTGGGAGTAATTAATCTTGGTGGTGAAGTAGGTTGTATGATCAGTGAAGGTCCTTGGATTTTTGTTGGTATACCAAATGCTGTAAAGGCGTGGAACACCCAAGCTAACTCCGAAATGAGTCTTAGTGGGCCTGTTGGACAAGTTTATTCCATGGTTGTGGGTAATGATTTGCTCTTTGCTGGTACGCAGGATGGTTCTATCTTGGCTTGGAAATTTAATACAGTCACCAATTGCTTTGAACCGGCTGCATCACTTAATGGTCACACCCTTGCAGTTGTATCATTAGTAGTTGGAGCAAATAGGCTTTACTCTGGTTCAATGGATCATTCTATAAGGGTCTGGAGCCTTGAAAACTTGCAATGTATACAAACACTAACAGAGCATACATCAGTTGTGATGTCCGTTCTTTGCTGGGATCAGTTTCTCTTATCAAGTTCTTTGGATAAAAAATTAAAGATCTGGGCTGCTACTCAAAGTGGAAACTTGGAAGTAGCATATACGCACGATGAAGACCATCCTTTGCTTACGCTTTGTGGGATGCATGATTCAGAAGCCAAGCCAGTCTTACTGTGTGCATGCAATGACAACACTGTCCGTCTCTACGATTTGCCATCGTTTTCTGAGAGAGGTAAAATATTCTCAAAACAGGAGATACGAGCAATCCAGGTTGGCCCTGGTGGCTTGTTTTTCACTGGCGATGGAACTGGACAAGTGAGAGTATGGAAGTGGTTGGCCGAACCAGTTGCAACTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
WD40 zf-CCCH

Protein Analysis

440

Amino Acids

47.3

Weight (kDa)

7.86

Isoelectric Point (pI)

28.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH_4 PF18044 116 - 136 1e-07 CCCH-type zinc finger
zf-CCCH PF00642 117 - 137 5.1e-07 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf_CCCH_4 PF18345 118 - 136 1.2e-07 Zinc finger domain
Beta-prop_WDR75_1st PF23869 126 - 193 1.2e-06 WD repeat-containing protein 75 first beta-propeller
Beta-prop_THOC3 PF25174 139 - 346 5.3e-25 THOC3 beta-propeller domain
Beta-prop_WDR5 PF25175 145 - 192 3.2e-08 WDR5 beta-propeller domain
WD40 PF00400 146 - 182 3.4e-07 WD domain, G-beta repeat
Beta-prop_WDR3_1st PF25173 147 - 190 1.5e-06 WDR3 first beta-propeller domain
EIF3I PF24805 147 - 196 1.2e-06 EIF3I
Beta-prop_EML_2 PF23414 159 - 348 4.8e-09 Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz PF24807 204 - 351 3.9e-11 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 209 - 358 7.2e-18 WDR3 first beta-propeller domain
WD40_WDHD1_1st PF24817 210 - 349 2.3e-10 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 216 - 365 1.6e-14 WDR5 beta-propeller domain
Beta-prop_IP5PC_F PF23754 237 - 317 6.2e-06 IP5P C-F beta-propeller
WDR55 PF24796 243 - 376 4.5e-06 WDR55
WD40_Prp19 PF24814 243 - 354 1.6e-10 Prp19 WD40 domain
Beta-prop_TEP1_2nd PF25047 245 - 345 1.6e-07 TEP-1 second beta-propeller
Beta-prop_WDR3_2nd PF25172 269 - 352 1.5e-07 WDR3 second beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000488)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25440 AT4G25440 AT4G25440 AT5G51980 AT5G51980
fragaria_vesca FvH4_2g11580 FvH4_3g29280 FvH4_4g05980 FvH4_7g28880 FvH4_7g28880
malus_domestica MD01G1195600.v1.1 MD02G1195200.v1.1 MD07G1262400.v1.1
prunus_persica Prupe.2G102200_v2.0.a1 Prupe.2G102200_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G288900_v2.0.a1
pyrus_communis pycom01g20620 pycom02g15900 pycom07g24140
rosa_chinensis RchiOBHm_Chr1g0376561 RchiOBHm_Chr3g0483051 RchiOBHm_Chr3g0483061 RchiOBHm_Chr3g0483601 RchiOBHm_Chr3g0483611 RchiOBHm_Chr4g0402321 RchiOBHm_Chr6g0270771
rosa_laevigata RLG00000009464 RLG00000009486 RLG00000013770 RLG00000023264 RLG00000023325 RLG00000026601 RLG00000035049
rosa_multiflora Rmu_co8110388.1_g000001 Rmu_co8419409.1_g000001 Rmu_sc0000555.1_g000012 Rmu_sc0000642.1_g000020 Rmu_sc0001308.1_g000010 Rmu_sc0002963.1_g000021 Rmu_sc0004788.1_g000012 Rmu_sc0005594.1_g000015 Rmu_sc0022770.1_g000001
rosa_roxburghii Rroxscaffold_4G00282000 Rroxscaffold_5G00341940 Rroxscaffold_5G00341950 Rroxscaffold_6G00398950 Rroxscaffold_7G00197610
rosa_rugosa Rorug01G0396500 Rorug03G0207400 Rorug03G0346000 Rorug04G0166800 Rorug06G0056400 Rorug06G0056500
rosa_samantha Rh1AG412700 Rh1BG372400 Rh1BG372600 Rh1CG386200 Rh1CG386500 Rh1DG403300 Rh1DG403500 Rh3AG255500 Rh3AG255600 Rh3BG292600 Rh3CG290200 Rh3DG278800 Rh3DG286100 Rh4AG075500 Rh4AG111600 Rh4BG071900 Rh4BG072100 Rh4BG231300 Rh4CG080200 Rh4CG080300 Rh4DG069300 Rh4DG069500 Rh6AG175700 Rh6BG178900 Rh6CG175200 Rh6DG167500
rosa_wichuraiana Rw1G036190 Rw3G023110 Rw4G006070 Rw6G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 187, 1154
AccBSI CCGCTC 2 cut(s) 104, 297
AccI GTMKAC 2 cut(s) 634, 928
AccII CGCG 1 cut(s) 144
AclWI GGATC 3 cut(s) 38, 894, 987
AcoI YGGCCR 2 cut(s) 244, 1296
AcsI RAATTY 1 cut(s) 776
AcuI CTGAAG 1 cut(s) 247
AcvI CACGTG 2 cut(s) 242, 285
AcyI GRCGYC 1 cut(s) 185
AfaI GTAC 1 cut(s) 748
AfiI CCNNNNNNNGG 1 cut(s) 167
AflIII ACRYGT 1 cut(s) 282
AgsI TTSAA 4 cut(s) 37, 803, 882, 914
AjnI CCWGG 3 cut(s) 564, 1227, 1237
AluBI AGCT 5 cut(s) 148, 381, 435, 505, 668
AluI AGCT 5 cut(s) 148, 381, 435, 505, 668
Alw21I GWGCWC 1 cut(s) 419
Alw26I GTCTC 2 cut(s) 521, 1166
AlwI GGATC 3 cut(s) 38, 894, 987
AlwNI CAGNNNCTG 1 cut(s) 565
AoxI GGCC 8 cut(s) 50, 169, 226, 236, 244, 692, 1234, 1296
ApeKI GCWGC 2 cut(s) 809, 1028
ApoI RAATTY 1 cut(s) 776
AseI ATTAAT 1 cut(s) 576
Asp700I GAANNNNTTC 1 cut(s) 260
AspLEI GCGC 1 cut(s) 58
AspS9I GGNCC 7 cut(s) 50, 227, 236, 251, 614, 692, 1235
AsuC2I CCSGG 1 cut(s) 248
AsuHPI GGTGA 2 cut(s) 599, 781
AvaII GGWCC 2 cut(s) 251, 614
BbrPI CACGTG 2 cut(s) 242, 285
BbsI GAAGAC 1 cut(s) 1080
Bbv12I GWGCWC 1 cut(s) 419
BbvI GCAGC 2 cut(s) 796, 1015
BccI CCATC 6 cut(s) 218, 334, 749, 1086, 1183, 1256
BceAI ACGGC 3 cut(s) 184, 198, 220
BcgI CGANNNNNNTGC 3 cut(s) 471, 505, 1289
BciT130I CCWGG 3 cut(s) 566, 1229, 1239
BclI TGATCA 1 cut(s) 603
BcnI CCSGG 1 cut(s) 248
BcoDI GTCTC 2 cut(s) 521, 1166
BfmI CTRYAG 1 cut(s) 376
BglI GCCNNNNNGGC 1 cut(s) 1242
BglII AGATCT 1 cut(s) 1020
Bme1390I CCNGG 4 cut(s) 248, 566, 1229, 1239
Bme18I GGWCC 2 cut(s) 251, 614
BmgT120I GGNCC 7 cut(s) 50, 227, 236, 251, 614, 692, 1235
BmiI GGNNCC 3 cut(s) 237, 252, 908
BmrFI CCNGG 4 cut(s) 248, 566, 1229, 1239
BmrI ACTGGG 2 cut(s) 429, 522
BmsI GCATC 3 cut(s) 466, 821, 1092
BmuI ACTGGG 2 cut(s) 429, 522
BpiI GAAGAC 1 cut(s) 1080
BpmI CTGGAG 1 cut(s) 925
BpuEI CTTGAG 1 cut(s) 470
BpuMI CCSGG 1 cut(s) 248
BsaAI YACGTR 2 cut(s) 242, 285
BsaHI GRCGYC 1 cut(s) 185
BsaJI CCNNGG 5 cut(s) 247, 565, 617, 714, 1237
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse118I RCCGGY 2 cut(s) 52, 805
Bse1I ACTGG 6 cut(s) 424, 517, 1124, 1261, 1273, 1304
Bse3DI GCAATG 3 cut(s) 482, 929, 1150
BseBI CCWGG 3 cut(s) 566, 1229, 1239
BseDI CCNNGG 5 cut(s) 247, 565, 617, 714, 1237
BseGI GGATG 5 cut(s) 10, 529, 760, 1078, 1107
BseLI CCNNNNNNNGG 1 cut(s) 167
BseMI GCAATG 3 cut(s) 482, 929, 1150
BseMII CTCAG 1 cut(s) 1176
BseNI ACTGG 6 cut(s) 424, 517, 1124, 1261, 1273, 1304
BseRI GAGGAG 2 cut(s) 307, 327
BseXI GCAGC 2 cut(s) 796, 1015
BseYI CCCAGC 1 cut(s) 975
Bsh1236I CGCG 1 cut(s) 144
BshFI GGCC 8 cut(s) 52, 171, 228, 238, 246, 694, 1236, 1298
BsiHKAI GWGCWC 1 cut(s) 419
BsiSI CCGG 3 cut(s) 53, 247, 806
BslFI GGGAC 2 cut(s) 193, 437
BslI CCNNNNNNNGG 1 cut(s) 167
BsmAI GTCTC 2 cut(s) 521, 1166
BsmBI CGTCTC 1 cut(s) 1166
BsmFI GGGAC 2 cut(s) 193, 437
BsmI GAATGC 1 cut(s) 406
BsnI GGCC 8 cut(s) 52, 171, 228, 238, 246, 694, 1236, 1298
Bsp1286I GDGCHC 1 cut(s) 419
Bsp143I GATC 5 cut(s) 30, 603, 886, 979, 1020
Bsp19I CCATGG 1 cut(s) 714
BspANI GGCC 8 cut(s) 52, 171, 228, 238, 246, 694, 1236, 1298
BspCNI CTCAG 1 cut(s) 1177
BspFNI CGCG 1 cut(s) 144
BspLI GGNNCC 3 cut(s) 237, 252, 908
BspPI GGATC 3 cut(s) 38, 894, 987
BsrBI CCGCTC 2 cut(s) 104, 297
BsrDI GCAATG 3 cut(s) 482, 929, 1150
BsrFI RCCGGY 2 cut(s) 52, 805
BsrI ACTGG 6 cut(s) 424, 517, 1124, 1261, 1273, 1304
BssAI RCCGGY 2 cut(s) 52, 805
BssECI CCNNGG 5 cut(s) 247, 565, 617, 714, 1237
BssMI GATC 5 cut(s) 30, 603, 886, 979, 1020
BssNAI GTATAC 2 cut(s) 635, 929
BssNI GRCGYC 1 cut(s) 185
BssT1I CCWWGG 2 cut(s) 617, 714
Bst1107I GTATAC 2 cut(s) 635, 929
Bst2UI CCWGG 3 cut(s) 566, 1229, 1239
Bst4CI ACNGT 6 cut(s) 377, 428, 532, 787, 1134, 1156
BstACI GRCGYC 1 cut(s) 185
BstBAI YACGTR 2 cut(s) 242, 285
BstC8I GCNNGC 6 cut(s) 26, 50, 54, 106, 146, 1141
BstDEI CTNAG 2 cut(s) 686, 1185
BstDSI CCRYGG 1 cut(s) 714
BstF5I GGATG 5 cut(s) 10, 529, 760, 1078, 1107
BstFNI CGCG 1 cut(s) 144
BstHHI GCGC 1 cut(s) 58
BstKTI GATC 5 cut(s) 33, 606, 889, 982, 1023
BstMAI GTCTC 2 cut(s) 521, 1166
BstMBI GATC 5 cut(s) 30, 603, 886, 979, 1020
BstMWI GCNNNNNNNGC 8 cut(s) 126, 154, 163, 303, 306, 454, 650, 1242
BstNI CCWGG 3 cut(s) 566, 1229, 1239
BstNSI RCATGY 1 cut(s) 1143
BstSCI CCNGG 4 cut(s) 246, 564, 1227, 1237
BstSFI CTRYAG 1 cut(s) 376
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 2 cut(s) 796, 1015
BstV2I GAAGAC 1 cut(s) 1080
BstX2I RGATCY 2 cut(s) 30, 1020
BstXI CCANNNNNNTGG 1 cut(s) 721
BstYI RGATCY 2 cut(s) 30, 1020
BstZ17I GTATAC 2 cut(s) 635, 929
BsuRI GGCC 8 cut(s) 52, 171, 228, 238, 246, 694, 1236, 1298
BtgI CCRYGG 1 cut(s) 714
BtgZI GCGATG 1 cut(s) 1275
BtsCI GGATG 5 cut(s) 10, 529, 760, 1078, 1107
BtsIMutI CAGTG 6 cut(s) 417, 510, 566, 613, 1152, 1254
Cac8I GCNNGC 6 cut(s) 26, 50, 54, 106, 146, 1141
CaiI CAGNNNCTG 1 cut(s) 565
CfoI GCGC 1 cut(s) 58
Cfr10I RCCGGY 2 cut(s) 52, 805
Cfr13I GGNCC 7 cut(s) 50, 227, 236, 251, 614, 692, 1235
CseI GACGC 2 cut(s) 174, 454
Csp6I GTAC 1 cut(s) 747
CviAII CATG 3 cut(s) 715, 1106, 1140
CviQI GTAC 1 cut(s) 747
DdeI CTNAG 2 cut(s) 686, 1185
DpnI GATC 5 cut(s) 32, 605, 888, 981, 1022
DpnII GATC 5 cut(s) 30, 603, 886, 979, 1020
DrdI GACNNNNNNGTC 2 cut(s) 187, 1154
DseDI GACNNNNNNGTC 2 cut(s) 187, 1154
EaeI YGGCCR 2 cut(s) 244, 1296
EciI GGCGGA 3 cut(s) 33, 285, 324
Eco130I CCWWGG 2 cut(s) 617, 714
Eco47I GGWCC 2 cut(s) 251, 614
Eco57I CTGAAG 1 cut(s) 247
Eco72I CACGTG 2 cut(s) 242, 285
EcoO109I RGGNCCY 1 cut(s) 614
EcoRII CCWGG 3 cut(s) 564, 1227, 1237
EcoT14I CCWWGG 2 cut(s) 617, 714
EcoT22I ATGCAT 1 cut(s) 1107
ErhI CCWWGG 2 cut(s) 617, 714
Esp3I CGTCTC 1 cut(s) 1166
FaeI CATG 3 cut(s) 718, 1109, 1143
FalI AAGNNNNNCTT 4 cut(s) 17, 49, 1112, 1144
FaqI GGGAC 2 cut(s) 193, 437
FatI CATG 3 cut(s) 714, 1105, 1139
FauI CCCGC 2 cut(s) 41, 97
FbaI TGATCA 1 cut(s) 603
FblI GTMKAC 2 cut(s) 634, 928
FokI GGATG 5 cut(s) 17, 536, 767, 1065, 1114
GlaI GCGC 1 cut(s) 57
GsaI CCCAGC 1 cut(s) 979
GsuI CTGGAG 1 cut(s) 925
HaeIII GGCC 8 cut(s) 52, 171, 228, 238, 246, 694, 1236, 1298
HapII CCGG 3 cut(s) 53, 247, 806
HgaI GACGC 2 cut(s) 174, 454
HhaI GCGC 1 cut(s) 58
Hin1I GRCGYC 1 cut(s) 185
Hin1II CATG 3 cut(s) 718, 1109, 1143
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HincII GTYRAC 1 cut(s) 441
HindII GTYRAC 1 cut(s) 441
HindIII AAGCTT 1 cut(s) 503
HinfI GANTC 2 cut(s) 682, 1109
HpaII CCGG 3 cut(s) 53, 247, 806
HphI GGTGA 2 cut(s) 599, 781
Hpy166II GTNNAC 3 cut(s) 441, 635, 929
Hpy188I TCNGA 6 cut(s) 255, 462, 499, 676, 1114, 1186
Hpy188III TCNNGA 1 cut(s) 904
Hpy8I GTNNAC 3 cut(s) 441, 635, 929
Hpy99I CGWCG 3 cut(s) 190, 235, 448
HpyAV CCTTC 5 cut(s) 5, 162, 171, 498, 605
HpyCH4III ACNGT 6 cut(s) 377, 428, 532, 787, 1134, 1156
HpyCH4IV ACGT 2 cut(s) 241, 284
HpyF10VI GCNNNNNNNGC 8 cut(s) 126, 154, 163, 303, 306, 454, 650, 1242
HpyF3I CTNAG 2 cut(s) 686, 1185
HpySE526I ACGT 2 cut(s) 241, 284
Hsp92I GRCGYC 1 cut(s) 185
Hsp92II CATG 3 cut(s) 718, 1109, 1143
HspAI GCGC 1 cut(s) 56
KroI GCCGGC 1 cut(s) 52
KroNI GCCGGC 1 cut(s) 54
Ksp22I TGATCA 1 cut(s) 603
Kzo9I GATC 5 cut(s) 30, 603, 886, 979, 1020
LmnI GCTCC 5 cut(s) 294, 414, 516, 857, 906
Lsp1109I GCAGC 2 cut(s) 796, 1015
LweI GCATC 3 cut(s) 466, 821, 1092
MaeII ACGT 2 cut(s) 241, 284
MaeIII GTNAC 2 cut(s) 787, 824
MalI GATC 5 cut(s) 32, 605, 888, 981, 1022
MbiI CCGCTC 2 cut(s) 104, 297
MboI GATC 5 cut(s) 30, 603, 886, 979, 1020
MboII GAAGA 3 cut(s) 25, 349, 1085
MfeI CAATTG 1 cut(s) 793
MflI RGATCY 2 cut(s) 30, 1020
MhlI GDGCHC 1 cut(s) 419
MluCI AATT 5 cut(s) 355, 573, 776, 793, 1013
MlyI GAGTC 1 cut(s) 691
MmeI TCCRAC 3 cut(s) 477, 679, 835
MnlI CCTC 8 cut(s) 8, 182, 266, 285, 305, 308, 445, 1184
Mph1103I ATGCAT 1 cut(s) 1107
MroNI GCCGGC 1 cut(s) 52
MroXI GAANNNNTTC 1 cut(s) 260
MseI TTAA 4 cut(s) 576, 780, 819, 1016
MslI CAYNNNNRTG 2 cut(s) 462, 719
MspA1I CMGCKG 1 cut(s) 267
MspI CCGG 3 cut(s) 53, 247, 806
MspR9I CCNGG 4 cut(s) 248, 566, 1229, 1239
MunI CAATTG 1 cut(s) 793
Mva1269I GAATGC 1 cut(s) 406
MvaI CCWGG 3 cut(s) 566, 1229, 1239
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 8 cut(s) 126, 154, 163, 303, 306, 454, 650, 1242
NaeI GCCGGC 1 cut(s) 54
NciI CCSGG 1 cut(s) 248
NcoI CCATGG 1 cut(s) 714
NdeII GATC 5 cut(s) 30, 603, 886, 979, 1020
NgoMIV GCCGGC 1 cut(s) 52
NlaIII CATG 3 cut(s) 718, 1109, 1143
NlaIV GGNNCC 3 cut(s) 237, 252, 908
NmuCI GTSAC 2 cut(s) 787, 824
NsiI ATGCAT 1 cut(s) 1107
NspI RCATGY 1 cut(s) 1143
PaeI GCATGC 1 cut(s) 1143
PctI GAATGC 1 cut(s) 406
PdiI GCCGGC 1 cut(s) 54
PdmI GAANNNNTTC 1 cut(s) 260
PfeI GAWTC 1 cut(s) 1109
PflFI GACNNNGTC 1 cut(s) 184
PleI GAGTC 1 cut(s) 690
PmaCI CACGTG 2 cut(s) 242, 285
PmlI CACGTG 2 cut(s) 242, 285
PpsI GAGTC 1 cut(s) 690
Ppu21I YACGTR 2 cut(s) 242, 285
PpuMI RGGWCCY 1 cut(s) 614
PshBI ATTAAT 1 cut(s) 576
Psp5II RGGWCCY 1 cut(s) 614
Psp6I CCWGG 3 cut(s) 564, 1227, 1237
PspCI CACGTG 2 cut(s) 242, 285
PspFI CCCAGC 1 cut(s) 975
PspGI CCWGG 3 cut(s) 564, 1227, 1237
PspN4I GGNNCC 3 cut(s) 237, 252, 908
PspPI GGNCC 7 cut(s) 50, 227, 236, 251, 614, 692, 1235
PspPPI RGGWCCY 1 cut(s) 614
PstNI CAGNNNCTG 1 cut(s) 565
PsuI RGATCY 2 cut(s) 30, 1020
PsyI GACNNNGTC 1 cut(s) 184
RsaI GTAC 1 cut(s) 748
RsaNI GTAC 1 cut(s) 747
RseI CAYNNNNRTG 2 cut(s) 462, 719
SaqAI TTAA 4 cut(s) 576, 780, 819, 1016
Sau3AI GATC 5 cut(s) 30, 603, 886, 979, 1020
Sau96I GGNCC 7 cut(s) 50, 227, 236, 251, 614, 692, 1235
SchI GAGTC 1 cut(s) 691
ScrFI CCNGG 4 cut(s) 248, 566, 1229, 1239
SduI GDGCHC 1 cut(s) 419
SfaNI GCATC 3 cut(s) 466, 821, 1092
SfcI CTRYAG 1 cut(s) 376
SinI GGWCC 2 cut(s) 251, 614
SmiMI CAYNNNNRTG 2 cut(s) 462, 719
SmlI CTYRAG 1 cut(s) 449
SmoI CTYRAG 1 cut(s) 449
SphI GCATGC 1 cut(s) 1143
Sse9I AATT 5 cut(s) 355, 573, 776, 793, 1013
SspI AATATT 1 cut(s) 1200
StyD4I CCNGG 4 cut(s) 246, 564, 1227, 1237
StyI CCWWGG 2 cut(s) 617, 714
TaaI ACNGT 6 cut(s) 377, 428, 532, 787, 1134, 1156
TaiI ACGT 2 cut(s) 244, 287
TaqI TCGA 1 cut(s) 278
TasI AATT 5 cut(s) 355, 573, 776, 793, 1013
TauI GCSGC 8 cut(s) 160, 199, 215, 270, 300, 303, 306, 309
TfiI GAWTC 1 cut(s) 1109
Tru1I TTAA 4 cut(s) 576, 780, 819, 1016
Tru9I TTAA 4 cut(s) 576, 780, 819, 1016
TscAI CASTG 6 cut(s) 424, 517, 566, 613, 1159, 1261
TseFI GTSAC 2 cut(s) 787, 824
TseI GCWGC 2 cut(s) 809, 1028
Tsp45I GTSAC 2 cut(s) 787, 824
TspDTI ATGAA 1 cut(s) 1086
TspGWI ACGGA 2 cut(s) 955, 1148
TspRI CASTG 6 cut(s) 424, 517, 566, 613, 1159, 1261
Tth111I GACNNNGTC 1 cut(s) 184
VpaK11BI GGWCC 2 cut(s) 251, 614
VspI ATTAAT 1 cut(s) 576
XapI RAATTY 1 cut(s) 776
XceI RCATGY 1 cut(s) 1143
XcmI CCANNNNNNNNNTGG 1 cut(s) 1235
XmiI GTMKAC 2 cut(s) 634, 928
XmnI GAANNNNTTC 1 cut(s) 260
Zsp2I ATGCAT 1 cut(s) 1107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.