RchiOBHm_Chr3g0483051

SCF-dependent proteasomal ubiquitin-dependent protein catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000488
Physical Location & Seq
Forward (+)
29156007 .. 29156267
261 bp
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UTR
Exon/CDS
Intron
PRQ44786

Sequence Viewer

Length: 261 bp
ATGGCAGGATGTGGACATGAGATCATTATGTTGGCAAATCTCCAAGGCCACAAAAAAGCTGTAACTGGTATTGCCTTTCCCGAAAGGAGTAGCAAGCTTTATACAGCTAGTAAATATGGGACAGTCAGAGTTTGGGATTGCAATACCGGTCAATGTATCACGGCAGTTAATCTTGGTGGTGAAACAGGGGCTTTGATTACTAAGGGTCCATGGGTTTTTTGTGGTGCGTATAATGTTGTACGTGAAGGCATGGAACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04114 ko04120 ko04218 ko04310 ko04340 ko04341 ko04390 ko04624 ko04710 ko05131 map03040 map04114 map04120 map04218 map04310 map04340 map04341 map04390 map04624 map04710 map05131
Pfam Domains
Protein Families
WD40 zf-CCCH

Protein Analysis

86

Amino Acids

9.22

Weight (kDa)

8.42

Isoelectric Point (pI)

16.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR5 PF25175 10 - 56 1.7e-08 WDR5 beta-propeller domain
WD40_Prp19 PF24814 10 - 56 5.2e-07 Prp19 WD40 domain
Beta-prop_WDR3_1st PF25173 11 - 56 8.4e-09 WDR3 first beta-propeller domain
WD40 PF00400 11 - 46 2.7e-07 WD domain, G-beta repeat
EIF3I PF24805 11 - 58 5.6e-06 EIF3I
Beta-prop_WDR75_1st PF23869 11 - 61 7.2e-06 WD repeat-containing protein 75 first beta-propeller
Beta-prop_THOC3 PF25174 12 - 62 7.6e-09 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 12 - 61 3.5e-06 WDHD1 first WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000488)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25440 AT4G25440 AT4G25440 AT5G51980 AT5G51980
fragaria_vesca FvH4_2g11580 FvH4_3g29280 FvH4_4g05980 FvH4_7g28880 FvH4_7g28880
malus_domestica MD01G1195600.v1.1 MD02G1195200.v1.1 MD07G1262400.v1.1
prunus_persica Prupe.2G102200_v2.0.a1 Prupe.2G102200_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G288900_v2.0.a1
pyrus_communis pycom01g20620 pycom02g15900 pycom07g24140
rosa_chinensis RchiOBHm_Chr1g0376561 RchiOBHm_Chr3g0483051 RchiOBHm_Chr3g0483061 RchiOBHm_Chr3g0483601 RchiOBHm_Chr3g0483611 RchiOBHm_Chr4g0402321 RchiOBHm_Chr6g0270771
rosa_laevigata RLG00000009464 RLG00000009486 RLG00000013770 RLG00000023264 RLG00000023325 RLG00000026601 RLG00000035049
rosa_multiflora Rmu_co8110388.1_g000001 Rmu_co8419409.1_g000001 Rmu_sc0000555.1_g000012 Rmu_sc0000642.1_g000020 Rmu_sc0001308.1_g000010 Rmu_sc0002963.1_g000021 Rmu_sc0004788.1_g000012 Rmu_sc0005594.1_g000015 Rmu_sc0022770.1_g000001
rosa_roxburghii Rroxscaffold_4G00282000 Rroxscaffold_5G00341940 Rroxscaffold_5G00341950 Rroxscaffold_6G00398950 Rroxscaffold_7G00197610
rosa_rugosa Rorug01G0396500 Rorug03G0207400 Rorug03G0346000 Rorug04G0166800 Rorug06G0056400 Rorug06G0056500
rosa_samantha Rh1AG412700 Rh1BG372400 Rh1BG372600 Rh1CG386200 Rh1CG386500 Rh1DG403300 Rh1DG403500 Rh3AG255500 Rh3AG255600 Rh3BG292600 Rh3CG290200 Rh3DG278800 Rh3DG286100 Rh4AG075500 Rh4AG111600 Rh4BG071900 Rh4BG072100 Rh4BG231300 Rh4CG080200 Rh4CG080300 Rh4DG069300 Rh4DG069500 Rh6AG175700 Rh6BG178900 Rh6CG175200 Rh6DG167500
rosa_wichuraiana Rw1G036190 Rw3G023110 Rw4G006070 Rw6G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 240
AgeI ACCGGT 1 cut(s) 146
AluBI AGCT 3 cut(s) 59, 97, 107
AluI AGCT 3 cut(s) 59, 97, 107
AoxI GGCC 1 cut(s) 46
AsiGI ACCGGT 1 cut(s) 146
AspS9I GGNCC 1 cut(s) 206
AsuHPI GGTGA 1 cut(s) 191
AvaII GGWCC 1 cut(s) 206
BceAI ACGGC 1 cut(s) 177
BfaI CTAG 1 cut(s) 108
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 206
BmiI GGNNCC 1 cut(s) 207
BsaAI YACGTR 1 cut(s) 242
BsaJI CCNNGG 2 cut(s) 43, 209
BsaWI WCCGGW 1 cut(s) 146
Bse118I RCCGGY 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 70
BseDI CCNNGG 2 cut(s) 43, 209
BseGI GGATG 1 cut(s) 14
BseNI ACTGG 1 cut(s) 70
BshFI GGCC 1 cut(s) 48
BshTI ACCGGT 1 cut(s) 146
BsiSI CCGG 1 cut(s) 147
BslFI GGGAC 1 cut(s) 133
BsmFI GGGAC 1 cut(s) 133
BsnI GGCC 1 cut(s) 48
Bsp143I GATC 1 cut(s) 21
Bsp19I CCATGG 1 cut(s) 209
BspANI GGCC 1 cut(s) 48
BspLI GGNNCC 1 cut(s) 207
BsrFI RCCGGY 1 cut(s) 146
BsrI ACTGG 1 cut(s) 70
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 2 cut(s) 43, 209
BssMI GATC 1 cut(s) 21
BssT1I CCWWGG 2 cut(s) 43, 209
Bst4CI ACNGT 1 cut(s) 124
BstBAI YACGTR 1 cut(s) 242
BstC8I GCNNGC 1 cut(s) 95
BstDEI CTNAG 1 cut(s) 201
BstDSI CCRYGG 1 cut(s) 209
BstF5I GGATG 1 cut(s) 14
BstKTI GATC 1 cut(s) 24
BstMBI GATC 1 cut(s) 21
BsuRI GGCC 1 cut(s) 48
BtgI CCRYGG 1 cut(s) 209
BtsCI GGATG 1 cut(s) 14
Cac8I GCNNGC 1 cut(s) 95
Cfr10I RCCGGY 1 cut(s) 146
Cfr13I GGNCC 1 cut(s) 206
Csp6I GTAC 1 cut(s) 239
CspAI ACCGGT 1 cut(s) 146
CviAII CATG 3 cut(s) 17, 210, 250
CviJI RGCY 5 cut(s) 48, 59, 97, 107, 191
CviKI_1 RGCY 5 cut(s) 48, 59, 97, 107, 191
CviQI GTAC 1 cut(s) 239
DdeI CTNAG 1 cut(s) 201
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
Eco130I CCWWGG 2 cut(s) 43, 209
Eco47I GGWCC 1 cut(s) 206
EcoT14I CCWWGG 2 cut(s) 43, 209
ErhI CCWWGG 2 cut(s) 43, 209
FaeI CATG 3 cut(s) 20, 213, 253
FaiI YATR 7 cut(s) 18, 29, 102, 117, 211, 231, 251
FaqI GGGAC 1 cut(s) 133
FatI CATG 3 cut(s) 16, 209, 249
FokI GGATG 1 cut(s) 21
FspBI CTAG 1 cut(s) 108
HaeIII GGCC 1 cut(s) 48
HapII CCGG 1 cut(s) 147
Hin1II CATG 3 cut(s) 20, 213, 253
HindIII AAGCTT 1 cut(s) 95
HpaII CCGG 1 cut(s) 147
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 1 cut(s) 14
Hpy188I TCNGA 1 cut(s) 128
Hpy188III TCNNGA 1 cut(s) 80
Hpy8I GTNNAC 1 cut(s) 14
HpyAV CCTTC 1 cut(s) 239
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4IV ACGT 1 cut(s) 241
HpyCH4V TGCA 1 cut(s) 141
HpyF3I CTNAG 1 cut(s) 201
HpySE526I ACGT 1 cut(s) 241
Hsp92II CATG 3 cut(s) 20, 213, 253
Kzo9I GATC 1 cut(s) 21
LpnPI CCDG 3 cut(s) 51, 160, 171
MaeI CTAG 1 cut(s) 108
MaeII ACGT 1 cut(s) 241
MaeIII GTNAC 1 cut(s) 61
MalI GATC 1 cut(s) 23
MboI GATC 1 cut(s) 21
MseI TTAA 1 cut(s) 168
MspI CCGG 1 cut(s) 147
NcoI CCATGG 1 cut(s) 209
NdeII GATC 1 cut(s) 21
NlaIII CATG 3 cut(s) 20, 213, 253
NlaIV GGNNCC 1 cut(s) 207
PinAI ACCGGT 1 cut(s) 146
Ppu21I YACGTR 1 cut(s) 242
PspN4I GGNNCC 1 cut(s) 207
PspPI GGNCC 1 cut(s) 206
RsaI GTAC 1 cut(s) 240
RsaNI GTAC 1 cut(s) 239
SaqAI TTAA 1 cut(s) 168
Sau3AI GATC 1 cut(s) 21
Sau96I GGNCC 1 cut(s) 206
SetI ASST 4 cut(s) 61, 99, 109, 244
SinI GGWCC 1 cut(s) 206
SspMI CTAG 1 cut(s) 108
StyI CCWWGG 2 cut(s) 43, 209
TaaI ACNGT 1 cut(s) 124
TaiI ACGT 1 cut(s) 244
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
VpaK11BI GGWCC 1 cut(s) 206
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.