Rw6G014960

Zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000488
Physical Location & Seq
Forward (+)
28171301 .. 28173885
2585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G014960.1

Sequence Viewer

Length: 1443 bp
ATGGCCTTTAAGGCGGGAAAGAGGCCGGCGAATAGGTCAGATATATCGGTGTATTCTCGACCAGGACCAGGAGGAGGAGCTGTTTGCAAGTTCTTCCAGCAAGGAAGATGCACCAAGATAGAGTGTAGGTTCTCCCACGTTTTAGCACCAACTCCACTGACAAACCCGCGACCTTTGGTTTGGAACAAGGAGGAGACTATTACCAGAAGGGATAAAAACATAGAGAGTATTGTTTCGCAGAAGACCGTGGCTACTCCGAAGAGAATGCCTGGCCAGCAAAGCATGGCTACTCAGAAGAGCTTTGTTACGCAGAAGAGCATGCCTAGCCAGCAAAACCTGGTTGACAAGCAAAGCCTGGCTACCAAGAATAGCATTGCCACCCAGAAGAGCATCGTTACTCAGCAAAGCATCCCTACCCAGAAAAGCATTCCCACCCAGAAAAATAATGCCATTCTGAAGCCCCTAGAAAAGGTCTGCAATTTCTGGGCTAATGGAAAATGTATGAAAGGCGATAGATGCCCATACCTGCATTCTTGGTTCTGTGGAGATGGGTTCTCCATGTTGGCAAAACTCCAAGACCACAAGAAGATGGTCACTGGTATTGTGCTTCCCGAAGGATCTAGCAAGCTCTATTCAGCCAGTAAAGACGGAACAGTCAGAATTTGGGACTGCCATACTGGTCATTGTGGCAGTGTAATTAATCTTGGTGGTGAAGCTGGTTGTTTATTTAGCAAGGGTCCATGGGTTTTTGCGGGTGCCCCAAATGTTGTTGAGGCATGGAACATTCAGACAAATGCTGAGTTTAGCCTAAGTGCACCTGCTGCGCAAGTGCATGCCATGGAGGTTGGTAATGAAATGCTTTTCGCTGGGACACAGGAAGGTGTTATATTGGTGTGGAAAGATGGTCCCGAGGATAATCCATTTCAGCTTGCTGCACCTCTGGAAGGCCACACCGGTGCTGTGGTATGTTTAAAAGTTGAAGCTGACAGGCTTTACTCGGGTTCTGTGGACCATACTATTAGGGCATGGGACCTTAATATGCTGCAGTCTATTATGACACTAAATGCACATTCTGATGTGGTGACGTCCCTTATTTGCTGGGGTCAATTTTTGATCTCATGCTCATTGGACTGCACAATAAAAGTCTGGGCTGAGAAAGGCAACTTGGAAGCAACATACACTCACACTCAAGAACATGGTCTTCTTGGTCTTTCCGGAGTGGCAGATGCAGAAGCTAAGCCAGTCCTGTTATGCTCATGTAAAGACAATTCTGTTTGGCTCTACGAACTGCCGTCATTTGCTGAAAGGGGCAGATTATTTGCAAAAAAAGAAGTTGGGGCGATTCAGGTAGGACCTGGGGGACTATTCTTCAGTGGGGATGGAACTGGTCTGCTCTCTGTTTGGAAGTGGGTGGAACCTGGCCTCAAAGTAGAGTCTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
WD40 zf-CCCH

Protein Analysis

480

Amino Acids

52.26

Weight (kDa)

8.68

Isoelectric Point (pI)

33.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf_CCCH_4 PF18345 159 - 177 9.6e-07 Zinc finger domain
Beta-prop_WDR3_1st PF25173 187 - 231 1.3e-07 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 187 - 233 6.3e-07 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 189 - 364 1.6e-18 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 249 - 428 3.3e-19 WDR3 first beta-propeller domain
WD40_WDHD1_1st PF24817 251 - 468 3.6e-08 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 254 - 427 3.6e-16 WDR5 beta-propeller domain
WD40_CDC20-Fz PF24807 259 - 393 2.5e-09 CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd PF25047 280 - 395 1e-09 TEP-1 second beta-propeller
Beta-prop_SCAP PF24017 314 - 400 8.9e-06 SCAP Beta-propeller
Beta-prop_WDR3_2nd PF25172 316 - 385 8.2e-08 WDR3 second beta-propeller domain
WD40_Prp19 PF24814 320 - 468 1.6e-10 Prp19 WD40 domain
WD40 PF00400 349 - 383 1e-05 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000488)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25440 AT4G25440 AT4G25440 AT5G51980 AT5G51980
fragaria_vesca FvH4_2g11580 FvH4_3g29280 FvH4_4g05980 FvH4_7g28880 FvH4_7g28880
malus_domestica MD01G1195600.v1.1 MD02G1195200.v1.1 MD07G1262400.v1.1
prunus_persica Prupe.2G102200_v2.0.a1 Prupe.2G102200_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G288900_v2.0.a1
pyrus_communis pycom01g20620 pycom02g15900 pycom07g24140
rosa_chinensis RchiOBHm_Chr1g0376561 RchiOBHm_Chr3g0483051 RchiOBHm_Chr3g0483061 RchiOBHm_Chr3g0483601 RchiOBHm_Chr3g0483611 RchiOBHm_Chr4g0402321 RchiOBHm_Chr6g0270771
rosa_laevigata RLG00000009464 RLG00000009486 RLG00000013770 RLG00000023264 RLG00000023325 RLG00000026601 RLG00000035049
rosa_multiflora Rmu_co8110388.1_g000001 Rmu_co8419409.1_g000001 Rmu_sc0000555.1_g000012 Rmu_sc0000642.1_g000020 Rmu_sc0001308.1_g000010 Rmu_sc0002963.1_g000021 Rmu_sc0004788.1_g000012 Rmu_sc0005594.1_g000015 Rmu_sc0022770.1_g000001
rosa_roxburghii Rroxscaffold_4G00282000 Rroxscaffold_5G00341940 Rroxscaffold_5G00341950 Rroxscaffold_6G00398950 Rroxscaffold_7G00197610
rosa_rugosa Rorug01G0396500 Rorug03G0207400 Rorug03G0346000 Rorug04G0166800 Rorug06G0056400 Rorug06G0056500
rosa_samantha Rh1AG412700 Rh1BG372400 Rh1BG372600 Rh1CG386200 Rh1CG386500 Rh1DG403300 Rh1DG403500 Rh3AG255500 Rh3AG255600 Rh3BG292600 Rh3CG290200 Rh3DG278800 Rh3DG286100 Rh4AG075500 Rh4AG111600 Rh4BG071900 Rh4BG072100 Rh4BG231300 Rh4CG080200 Rh4CG080300 Rh4DG069300 Rh4DG069500 Rh6AG175700 Rh6BG178900 Rh6CG175200 Rh6DG167500
rosa_wichuraiana Rw1G036190 Rw3G023110 Rw4G006070 Rw6G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 826
AasI GACNNNNNNGTC 1 cut(s) 653
AatII GACGTC 1 cut(s) 1088
Acc16I TGCGCA 1 cut(s) 825
Acc36I ACCTGC 2 cut(s) 534, 826
AccB1I GGYRCC 1 cut(s) 755
AccII CGCG 1 cut(s) 169
AccIII TCCGGA 1 cut(s) 1214
AciI CCGC 3 cut(s) 14, 167, 752
AclWI GGATC 1 cut(s) 625
AcoI YGGCCR 1 cut(s) 271
AcsI RAATTY 1 cut(s) 660
AcuI CTGAAG 2 cut(s) 476, 1354
AcyI GRCGYC 1 cut(s) 1085
AfiI CCNNNNNNNGG 4 cut(s) 68, 74, 469, 944
AgeI ACCGGT 1 cut(s) 953
AgsI TTSAA 1 cut(s) 980
AjnI CCWGG 7 cut(s) 61, 67, 268, 336, 354, 1354, 1417
AjuI GAANNNNNNNTTGG 2 cut(s) 1148, 1180
AleI CACNNNNGTG 1 cut(s) 954
AluBI AGCT 7 cut(s) 80, 300, 628, 716, 928, 983, 1235
AluI AGCT 7 cut(s) 80, 300, 628, 716, 928, 983, 1235
Alw21I GWGCWC 1 cut(s) 817
Alw26I GTCTC 1 cut(s) 188
Alw44I GTGCAC 1 cut(s) 813
AlwI GGATC 1 cut(s) 625
Ama87I CYCGRG 2 cut(s) 908, 997
Aor13HI TCCGGA 1 cut(s) 1214
AoxI GGCC 5 cut(s) 3, 23, 271, 946, 1420
ApaLI GTGCAC 1 cut(s) 813
ApeKI GCWGC 3 cut(s) 821, 932, 1042
ApoI RAATTY 1 cut(s) 660
ArsI GACNNNNNNTTYG 2 cut(s) 162, 194
AseI ATTAAT 1 cut(s) 699
AsiGI ACCGGT 1 cut(s) 953
AspLEI GCGC 1 cut(s) 826
AspS9I GGNCC 6 cut(s) 65, 737, 905, 1009, 1030, 1352
AsuHPI GGTGA 2 cut(s) 722, 1093
AvaI CYCGRG 2 cut(s) 908, 997
AvaII GGWCC 6 cut(s) 65, 737, 905, 1009, 1030, 1352
BaeGI GKGCMC 2 cut(s) 760, 817
BalI TGGCCA 1 cut(s) 273
BanI GGYRCC 1 cut(s) 755
BbsI GAAGAC 3 cut(s) 248, 1193, 1428
Bbv12I GWGCWC 1 cut(s) 817
BbvI GCAGC 3 cut(s) 808, 919, 1029
BccI CCATC 4 cut(s) 542, 583, 896, 1373
BceAI ACGGC 1 cut(s) 1276
BcgI CGANNNNNNTGC 2 cut(s) 247, 281
BciT130I CCWGG 7 cut(s) 63, 69, 270, 338, 356, 1356, 1419
BcoDI GTCTC 1 cut(s) 188
BfaI CTAG 3 cut(s) 324, 464, 621
BfmI CTRYAG 1 cut(s) 1043
BfuAI ACCTGC 2 cut(s) 534, 826
BglI GCCNNNNNGGC 1 cut(s) 11
BisI GCNGC 3 cut(s) 822, 933, 1043
BlpI GCTNAGC 1 cut(s) 1236
BlsI GCNGC 3 cut(s) 823, 934, 1044
Bme1390I CCNGG 7 cut(s) 63, 69, 270, 338, 356, 1356, 1419
Bme18I GGWCC 6 cut(s) 65, 737, 905, 1009, 1030, 1352
BmeT110I CYCGRG 2 cut(s) 908, 997
BmgT120I GGNCC 6 cut(s) 65, 737, 905, 1009, 1030, 1352
BmiI GGNNCC 5 cut(s) 738, 757, 907, 1031, 1416
BmrFI CCNGG 7 cut(s) 63, 69, 270, 338, 356, 1356, 1419
BmsI GCATC 5 cut(s) 98, 399, 417, 506, 1216
BpiI GAAGAC 3 cut(s) 248, 1193, 1428
Bpu1102I GCTNAGC 1 cut(s) 1236
BpuEI CTTGAG 1 cut(s) 1173
BsaHI GRCGYC 1 cut(s) 1085
BsaJI CCNNGG 5 cut(s) 246, 740, 837, 909, 1355
BsaWI WCCGGW 2 cut(s) 953, 1214
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bsc4I CCNNNNNNNGG 4 cut(s) 68, 74, 469, 944
Bse118I RCCGGY 2 cut(s) 25, 953
Bse1I ACTGG 5 cut(s) 601, 639, 682, 1241, 1390
Bse3DI GCAATG 1 cut(s) 372
BseAI TCCGGA 1 cut(s) 1214
BseBI CCWGG 7 cut(s) 63, 69, 270, 338, 356, 1356, 1419
BseDI CCNNGG 5 cut(s) 246, 740, 837, 909, 1355
BseGI GGATG 2 cut(s) 408, 1384
BseLI CCNNNNNNNGG 4 cut(s) 68, 74, 469, 944
BseMI GCAATG 1 cut(s) 372
BseMII CTCAG 4 cut(s) 305, 413, 789, 1143
BseNI ACTGG 5 cut(s) 601, 639, 682, 1241, 1390
BseRI GAGGAG 3 cut(s) 87, 90, 206
BseSI GKGCMC 2 cut(s) 760, 817
BseXI GCAGC 3 cut(s) 808, 919, 1029
BseYI CCCAGC 2 cut(s) 866, 1098
BsgI GTGCAG 2 cut(s) 918, 1117
Bsh1236I CGCG 1 cut(s) 169
BshFI GGCC 5 cut(s) 5, 25, 273, 948, 1422
BshNI GGYRCC 1 cut(s) 755
BshTI ACCGGT 1 cut(s) 953
BsiHKAI GWGCWC 1 cut(s) 817
BsiHKCI CYCGRG 2 cut(s) 908, 997
BsiSI CCGG 3 cut(s) 26, 954, 1215
BslFI GGGAC 6 cut(s) 680, 883, 891, 1043, 1072, 1374
BslI CCNNNNNNNGG 4 cut(s) 68, 74, 469, 944
BsmAI GTCTC 1 cut(s) 188
BsmFI GGGAC 6 cut(s) 680, 883, 891, 1043, 1072, 1374
BsmI GAATGC 3 cut(s) 270, 426, 529
BsnI GGCC 5 cut(s) 5, 25, 273, 948, 1422
BsoBI CYCGRG 2 cut(s) 908, 997
Bsp1286I GDGCHC 2 cut(s) 760, 817
Bsp13I TCCGGA 1 cut(s) 1214
Bsp143I GATC 2 cut(s) 617, 1113
Bsp1720I GCTNAGC 1 cut(s) 1236
Bsp19I CCATGG 2 cut(s) 740, 837
BspACI CCGC 3 cut(s) 14, 167, 752
BspANI GGCC 5 cut(s) 5, 25, 273, 948, 1422
BspCNI CTCAG 4 cut(s) 304, 412, 790, 1144
BspEI TCCGGA 1 cut(s) 1214
BspFNI CGCG 1 cut(s) 169
BspLI GGNNCC 5 cut(s) 738, 757, 907, 1031, 1416
BspMAI CTGCAG 1 cut(s) 1047
BspMI ACCTGC 2 cut(s) 534, 826
BspPI GGATC 1 cut(s) 625
BspQI GCTCTTC 3 cut(s) 290, 308, 380
BspT107I GGYRCC 1 cut(s) 755
BsrDI GCAATG 1 cut(s) 372
BsrFI RCCGGY 2 cut(s) 25, 953
BsrI ACTGG 5 cut(s) 601, 639, 682, 1241, 1390
BssAI RCCGGY 2 cut(s) 25, 953
BssECI CCNNGG 5 cut(s) 246, 740, 837, 909, 1355
BssMI GATC 2 cut(s) 617, 1113
BssNI GRCGYC 1 cut(s) 1085
BssT1I CCWWGG 2 cut(s) 740, 837
Bst2UI CCWGG 7 cut(s) 63, 69, 270, 338, 356, 1356, 1419
Bst4CI ACNGT 2 cut(s) 247, 655
Bst6I CTCTTC 4 cut(s) 254, 290, 308, 380
BstACI GRCGYC 1 cut(s) 1085
BstAPI GCANNNNNTGC 1 cut(s) 821
BstC8I GCNNGC 7 cut(s) 27, 275, 320, 329, 626, 834, 930
BstDEI CTNAG 6 cut(s) 291, 399, 798, 809, 1152, 1236
BstDSI CCRYGG 3 cut(s) 246, 740, 837
BstENI CCTNNNNNAGG 2 cut(s) 467, 942
BstF5I GGATG 2 cut(s) 408, 1384
BstFNI CGCG 1 cut(s) 169
BstHHI GCGC 1 cut(s) 826
BstKTI GATC 2 cut(s) 620, 1116
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 2 cut(s) 617, 1113
BstMWI GCNNNNNNNGC 7 cut(s) 11, 274, 279, 324, 328, 516, 821
BstNI CCWGG 7 cut(s) 63, 69, 270, 338, 356, 1356, 1419
BstNSI RCATGY 2 cut(s) 322, 836
BstSCI CCNGG 7 cut(s) 61, 67, 268, 336, 354, 1354, 1417
BstSFI CTRYAG 1 cut(s) 1043
BstSLI GKGCMC 2 cut(s) 760, 817
BstUI CGCG 1 cut(s) 169
BstV1I GCAGC 3 cut(s) 808, 919, 1029
BstV2I GAAGAC 3 cut(s) 248, 1193, 1428
BstX2I RGATCY 1 cut(s) 617
BstYI RGATCY 1 cut(s) 617
BsuRI GGCC 5 cut(s) 5, 25, 273, 948, 1422
BtgI CCRYGG 3 cut(s) 246, 740, 837
BtsCI GGATG 2 cut(s) 408, 1384
BtsI GCAGTG 1 cut(s) 697
BtsIMutI CAGTG 4 cut(s) 155, 594, 697, 1378
BveI ACCTGC 2 cut(s) 534, 826
Cac8I GCNNGC 7 cut(s) 27, 275, 320, 329, 626, 834, 930
CfoI GCGC 1 cut(s) 826
Cfr10I RCCGGY 2 cut(s) 25, 953
Cfr13I GGNCC 6 cut(s) 65, 737, 905, 1009, 1030, 1352
CsiI ACCWGGT 1 cut(s) 336
CspAI ACCGGT 1 cut(s) 953
DdeI CTNAG 6 cut(s) 291, 399, 798, 809, 1152, 1236
DpnI GATC 2 cut(s) 619, 1115
DpnII GATC 2 cut(s) 617, 1113
DraI TTTAAA 1 cut(s) 972
DrdI GACNNNNNNGTC 1 cut(s) 653
DseDI GACNNNNNNGTC 1 cut(s) 653
EaeI YGGCCR 1 cut(s) 271
Eam1104I CTCTTC 4 cut(s) 254, 290, 308, 380
EarI CTCTTC 4 cut(s) 254, 290, 308, 380
Eco130I CCWWGG 2 cut(s) 740, 837
Eco47I GGWCC 6 cut(s) 65, 737, 905, 1009, 1030, 1352
Eco57I CTGAAG 2 cut(s) 476, 1354
Eco88I CYCGRG 2 cut(s) 908, 997
EcoNI CCTNNNNNAGG 2 cut(s) 467, 942
EcoO109I RGGNCCY 2 cut(s) 1030, 1352
EcoRII CCWGG 7 cut(s) 61, 67, 268, 336, 354, 1354, 1417
EcoT14I CCWWGG 2 cut(s) 740, 837
ErhI CCWWGG 2 cut(s) 740, 837
FaqI GGGAC 6 cut(s) 680, 883, 891, 1043, 1072, 1374
FauI CCCGC 3 cut(s) 7, 174, 745
Fnu4HI GCNGC 3 cut(s) 822, 933, 1043
FokI GGATG 2 cut(s) 395, 1391
Fsp4HI GCNGC 3 cut(s) 822, 933, 1043
FspBI CTAG 3 cut(s) 324, 464, 621
FspI TGCGCA 1 cut(s) 825
GlaI GCGC 1 cut(s) 825
GluI GCNGC 3 cut(s) 822, 933, 1043
GsaI CCCAGC 2 cut(s) 870, 1102
HaeIII GGCC 5 cut(s) 5, 25, 273, 948, 1422
HapII CCGG 3 cut(s) 26, 954, 1215
HhaI GCGC 1 cut(s) 826
Hin1I GRCGYC 1 cut(s) 1085
Hin6I GCGC 1 cut(s) 824
HinP1I GCGC 1 cut(s) 824
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HinfI GANTC 2 cut(s) 1342, 1433
HpaII CCGG 3 cut(s) 26, 954, 1215
HphI GGTGA 2 cut(s) 722, 1093
Hpy166II GTNNAC 3 cut(s) 343, 815, 1009
Hpy188I TCNGA 7 cut(s) 40, 258, 294, 456, 659, 789, 1075
Hpy188III TCNNGA 6 cut(s) 57, 611, 908, 941, 1190, 1215
Hpy8I GTNNAC 3 cut(s) 343, 815, 1009
HpyAV CCTTC 4 cut(s) 201, 608, 872, 938
HpyCH4III ACNGT 2 cut(s) 247, 655
HpyCH4IV ACGT 2 cut(s) 138, 1085
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 274, 279, 324, 328, 516, 821
HpyF3I CTNAG 6 cut(s) 291, 399, 798, 809, 1152, 1236
HpySE526I ACGT 2 cut(s) 138, 1085
Hsp92I GRCGYC 1 cut(s) 1085
HspAI GCGC 1 cut(s) 824
Kpn2I TCCGGA 1 cut(s) 1214
KroI GCCGGC 1 cut(s) 25
KroNI GCCGGC 1 cut(s) 27
Kzo9I GATC 2 cut(s) 617, 1113
LguI GCTCTTC 3 cut(s) 290, 308, 380
LmnI GCTCC 1 cut(s) 77
Lsp1109I GCAGC 3 cut(s) 808, 919, 1029
LweI GCATC 5 cut(s) 98, 399, 417, 506, 1216
MabI ACCWGGT 1 cut(s) 336
MaeI CTAG 3 cut(s) 324, 464, 621
MaeII ACGT 2 cut(s) 138, 1085
MaeIII GTNAC 4 cut(s) 304, 394, 592, 1081
MalI GATC 2 cut(s) 619, 1115
MboI GATC 2 cut(s) 617, 1113
MflI RGATCY 1 cut(s) 617
MhlI GDGCHC 2 cut(s) 760, 817
MlsI TGGCCA 1 cut(s) 273
MluCI AATT 5 cut(s) 478, 660, 696, 1106, 1267
MluNI TGGCCA 1 cut(s) 273
MlyI GAGTC 1 cut(s) 1442
MnlI CCTC 9 cut(s) 15, 65, 68, 184, 766, 835, 904, 948, 1433
Mox20I TGGCCA 1 cut(s) 273
MroI TCCGGA 1 cut(s) 1214
MroNI GCCGGC 1 cut(s) 25
MscI TGGCCA 1 cut(s) 273
MseI TTAA 4 cut(s) 9, 699, 971, 1035
MslI CAYNNNNRTG 2 cut(s) 954, 1074
Msp20I TGGCCA 1 cut(s) 273
MspI CCGG 3 cut(s) 26, 954, 1215
MspR9I CCNGG 7 cut(s) 63, 69, 270, 338, 356, 1356, 1419
Mva1269I GAATGC 3 cut(s) 270, 426, 529
MvaI CCWGG 7 cut(s) 63, 69, 270, 338, 356, 1356, 1419
MvnI CGCG 1 cut(s) 169
MwoI GCNNNNNNNGC 7 cut(s) 11, 274, 279, 324, 328, 516, 821
NaeI GCCGGC 1 cut(s) 27
NcoI CCATGG 2 cut(s) 740, 837
NdeII GATC 2 cut(s) 617, 1113
NgoMIV GCCGGC 1 cut(s) 25
NlaIV GGNNCC 5 cut(s) 738, 757, 907, 1031, 1416
NmuCI GTSAC 2 cut(s) 592, 1081
NsbI TGCGCA 1 cut(s) 825
NspI RCATGY 2 cut(s) 322, 836
OliI CACNNNNGTG 1 cut(s) 954
PaeI GCATGC 2 cut(s) 322, 836
PaqCI CACCTGC 1 cut(s) 826
PciSI GCTCTTC 3 cut(s) 290, 308, 380
PctI GAATGC 3 cut(s) 270, 426, 529
PdiI GCCGGC 1 cut(s) 27
PfeI GAWTC 1 cut(s) 1342
PinAI ACCGGT 1 cut(s) 953
PkrI GCNGC 3 cut(s) 823, 934, 1044
PleI GAGTC 1 cut(s) 1441
PpsI GAGTC 1 cut(s) 1441
PpuMI RGGWCCY 2 cut(s) 1030, 1352
PshBI ATTAAT 1 cut(s) 699
Psp5II RGGWCCY 2 cut(s) 1030, 1352
Psp6I CCWGG 7 cut(s) 61, 67, 268, 336, 354, 1354, 1417
PspFI CCCAGC 2 cut(s) 866, 1098
PspGI CCWGG 7 cut(s) 61, 67, 268, 336, 354, 1354, 1417
PspN4I GGNNCC 5 cut(s) 738, 757, 907, 1031, 1416
PspPI GGNCC 6 cut(s) 65, 737, 905, 1009, 1030, 1352
PspPPI RGGWCCY 2 cut(s) 1030, 1352
PstI CTGCAG 1 cut(s) 1047
PsuI RGATCY 1 cut(s) 617
RseI CAYNNNNRTG 2 cut(s) 954, 1074
SapI GCTCTTC 3 cut(s) 290, 308, 380
SaqAI TTAA 4 cut(s) 9, 699, 971, 1035
SatI GCNGC 3 cut(s) 822, 933, 1043
Sau3AI GATC 2 cut(s) 617, 1113
Sau96I GGNCC 6 cut(s) 65, 737, 905, 1009, 1030, 1352
SchI GAGTC 1 cut(s) 1442
ScrFI CCNGG 7 cut(s) 63, 69, 270, 338, 356, 1356, 1419
SduI GDGCHC 2 cut(s) 760, 817
SexAI ACCWGGT 1 cut(s) 336
SfaNI GCATC 5 cut(s) 98, 399, 417, 506, 1216
SfcI CTRYAG 1 cut(s) 1043
SgrAI CRCCGGYG 1 cut(s) 953
SinI GGWCC 6 cut(s) 65, 737, 905, 1009, 1030, 1352
SmiMI CAYNNNNRTG 2 cut(s) 954, 1074
SmlI CTYRAG 1 cut(s) 1188
SmoI CTYRAG 1 cut(s) 1188
SphI GCATGC 2 cut(s) 322, 836
Sse9I AATT 5 cut(s) 478, 660, 696, 1106, 1267
SsiI CCGC 3 cut(s) 14, 167, 752
SspMI CTAG 3 cut(s) 324, 464, 621
StyD4I CCNGG 7 cut(s) 61, 67, 268, 336, 354, 1354, 1417
StyI CCWWGG 2 cut(s) 740, 837
TaaI ACNGT 2 cut(s) 247, 655
TaiI ACGT 2 cut(s) 141, 1088
TaqI TCGA 1 cut(s) 58
TasI AATT 5 cut(s) 478, 660, 696, 1106, 1267
TfiI GAWTC 1 cut(s) 1342
Tru1I TTAA 4 cut(s) 9, 699, 971, 1035
Tru9I TTAA 4 cut(s) 9, 699, 971, 1035
TscAI CASTG 4 cut(s) 162, 601, 697, 1378
TseFI GTSAC 2 cut(s) 592, 1081
TseI GCWGC 3 cut(s) 821, 932, 1042
Tsp45I GTSAC 2 cut(s) 592, 1081
TspDTI ATGAA 3 cut(s) 518, 867, 1428
TspGWI ACGGA 1 cut(s) 663
TspRI CASTG 4 cut(s) 162, 601, 697, 1378
VneI GTGCAC 1 cut(s) 813
VpaK11BI GGWCC 6 cut(s) 65, 737, 905, 1009, 1030, 1352
VspI ATTAAT 1 cut(s) 699
XagI CCTNNNNNAGG 2 cut(s) 467, 942
XapI RAATTY 1 cut(s) 660
XceI RCATGY 2 cut(s) 322, 836
XspI CTAG 3 cut(s) 324, 464, 621
ZraI GACGTC 1 cut(s) 1086
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.