Rh3DG286100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000488
Physical Location & Seq
Forward (+)
29245356 .. 29245631
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG286100.1

Sequence Viewer

Length: 276 bp
ATGGAGGAGAATGGAAAATCTATGTGGAAAGCATCTGATTCTGTTAATGTTATGGTTGAGAATAACACTGATACCCATAAAGGGAAAGCGGCCAAAGCAGTCTGCAAGTTCTGGGCAGATGGAAAGTGTGTAAGACGCGAAGGTGCCCTTATTTGCACAGTTGGTTCGGTGGAGATGGCTTTTCTTCCTTGGCAAAATTCCAAGGCCATAATTGTGCTTCTGGAGAGAAGTAGCAATCTTTATTCTCCTGCCAAAGATGAAACAGTTAGGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.08

Weight (kDa)

8.5

Isoelectric Point (pI)

30.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000488)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25440 AT4G25440 AT4G25440 AT5G51980 AT5G51980
fragaria_vesca FvH4_2g11580 FvH4_3g29280 FvH4_4g05980 FvH4_7g28880 FvH4_7g28880
malus_domestica MD01G1195600.v1.1 MD02G1195200.v1.1 MD07G1262400.v1.1
prunus_persica Prupe.2G102200_v2.0.a1 Prupe.2G102200_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G288900_v2.0.a1
pyrus_communis pycom01g20620 pycom02g15900 pycom07g24140
rosa_chinensis RchiOBHm_Chr1g0376561 RchiOBHm_Chr3g0483051 RchiOBHm_Chr3g0483061 RchiOBHm_Chr3g0483601 RchiOBHm_Chr3g0483611 RchiOBHm_Chr4g0402321 RchiOBHm_Chr6g0270771
rosa_laevigata RLG00000009464 RLG00000009486 RLG00000013770 RLG00000023264 RLG00000023325 RLG00000026601 RLG00000035049
rosa_multiflora Rmu_co8110388.1_g000001 Rmu_co8419409.1_g000001 Rmu_sc0000555.1_g000012 Rmu_sc0000642.1_g000020 Rmu_sc0001308.1_g000010 Rmu_sc0002963.1_g000021 Rmu_sc0004788.1_g000012 Rmu_sc0005594.1_g000015 Rmu_sc0022770.1_g000001
rosa_roxburghii Rroxscaffold_4G00282000 Rroxscaffold_5G00341940 Rroxscaffold_5G00341950 Rroxscaffold_6G00398950 Rroxscaffold_7G00197610
rosa_rugosa Rorug01G0396500 Rorug03G0207400 Rorug03G0346000 Rorug04G0166800 Rorug06G0056400 Rorug06G0056500
rosa_samantha Rh1AG412700 Rh1BG372400 Rh1BG372600 Rh1CG386200 Rh1CG386500 Rh1DG403300 Rh1DG403500 Rh3AG255500 Rh3AG255600 Rh3BG292600 Rh3CG290200 Rh3DG278800 Rh3DG286100 Rh4AG075500 Rh4AG111600 Rh4BG071900 Rh4BG072100 Rh4BG231300 Rh4CG080200 Rh4CG080300 Rh4DG069300 Rh4DG069500 Rh6AG175700 Rh6BG178900 Rh6CG175200 Rh6DG167500
rosa_wichuraiana Rw1G036190 Rw3G023110 Rw4G006070 Rw6G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 143
AccII CGCG 1 cut(s) 138
AciI CCGC 1 cut(s) 89
AcoI YGGCCR 1 cut(s) 90
AcsI RAATTY 1 cut(s) 196
AfiI CCNNNNNNNGG 1 cut(s) 81
AoxI GGCC 2 cut(s) 90, 204
ApoI RAATTY 1 cut(s) 196
BaeGI GKGCMC 1 cut(s) 148
BanI GGYRCC 1 cut(s) 143
BccI CCATC 2 cut(s) 113, 169
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
BmiI GGNNCC 1 cut(s) 145
BmsI GCATC 1 cut(s) 41
BpmI CTGGAG 1 cut(s) 242
BsaJI CCNNGG 2 cut(s) 188, 201
Bsc4I CCNNNNNNNGG 1 cut(s) 81
BseDI CCNNGG 2 cut(s) 188, 201
BseLI CCNNNNNNNGG 1 cut(s) 81
BseRI GAGGAG 1 cut(s) 20
BseSI GKGCMC 1 cut(s) 148
Bsh1236I CGCG 1 cut(s) 138
BshFI GGCC 2 cut(s) 92, 206
BshNI GGYRCC 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 81
BsnI GGCC 2 cut(s) 92, 206
Bsp1286I GDGCHC 1 cut(s) 148
BspACI CCGC 1 cut(s) 89
BspANI GGCC 2 cut(s) 92, 206
BspFNI CGCG 1 cut(s) 138
BspLI GGNNCC 1 cut(s) 145
BspT107I GGYRCC 1 cut(s) 143
BssECI CCNNGG 2 cut(s) 188, 201
BssT1I CCWWGG 2 cut(s) 188, 201
Bst4CI ACNGT 2 cut(s) 160, 265
BstFNI CGCG 1 cut(s) 138
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstSLI GKGCMC 1 cut(s) 148
BstUI CGCG 1 cut(s) 138
BsuRI GGCC 2 cut(s) 92, 206
BtsIMutI CAGTG 1 cut(s) 66
CseI GACGC 1 cut(s) 144
CviJI RGCY 3 cut(s) 92, 179, 206
CviKI_1 RGCY 3 cut(s) 92, 179, 206
EaeI YGGCCR 1 cut(s) 90
Eco130I CCWWGG 2 cut(s) 188, 201
EcoT14I CCWWGG 2 cut(s) 188, 201
ErhI CCWWGG 2 cut(s) 188, 201
FaiI YATR 4 cut(s) 23, 53, 78, 209
FalI AAGNNNNNCTT 2 cut(s) 132, 164
Fnu4HI GCNGC 1 cut(s) 90
Fsp4HI GCNGC 1 cut(s) 90
GluI GCNGC 1 cut(s) 90
GsuI CTGGAG 1 cut(s) 242
HaeIII GGCC 2 cut(s) 92, 206
HgaI GACGC 1 cut(s) 144
HinfI GANTC 1 cut(s) 38
Hpy188I TCNGA 1 cut(s) 37
Hpy188III TCNNGA 1 cut(s) 221
HpyAV CCTTC 1 cut(s) 134
HpyCH4III ACNGT 2 cut(s) 160, 265
HpyCH4V TGCA 2 cut(s) 105, 156
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
LpnPI CCDG 3 cut(s) 97, 206, 261
LweI GCATC 1 cut(s) 41
MboII GAAGA 1 cut(s) 176
MhlI GDGCHC 1 cut(s) 148
MluCI AATT 2 cut(s) 196, 210
MseI TTAA 1 cut(s) 45
MslI CAYNNNNRTG 1 cut(s) 212
MvnI CGCG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 95
NlaIV GGNNCC 1 cut(s) 145
PfeI GAWTC 1 cut(s) 38
PkrI GCNGC 1 cut(s) 91
PspN4I GGNNCC 1 cut(s) 145
RseI CAYNNNNRTG 1 cut(s) 212
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 1 cut(s) 90
SduI GDGCHC 1 cut(s) 148
SetI ASST 1 cut(s) 145
SfaNI GCATC 1 cut(s) 41
SgeI CNNG 7 cut(s) 118, 124, 149, 201, 214, 233, 260
SmiMI CAYNNNNRTG 1 cut(s) 212
Sse9I AATT 2 cut(s) 196, 210
SsiI CCGC 1 cut(s) 89
StyI CCWWGG 2 cut(s) 188, 201
TaaI ACNGT 2 cut(s) 160, 265
TasI AATT 2 cut(s) 196, 210
TauI GCSGC 1 cut(s) 92
TfiI GAWTC 1 cut(s) 38
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 1 cut(s) 73
TspDTI ATGAA 1 cut(s) 273
TspRI CASTG 1 cut(s) 73
XapI RAATTY 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.