zinc finger CCCH domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Beta-prop_WDR5 | PF25175 | 107 - 158 | 1.4e-07 | WDR5 beta-propeller domain |
| Beta-prop_WDR3_1st | PF25173 | 112 - 158 | 1.8e-07 | WDR3 first beta-propeller domain |
| WD40_Prp19 | PF24814 | 112 - 159 | 4.4e-06 | Prp19 WD40 domain |
| WD40 | PF00400 | 112 - 148 | 1.1e-06 | WD domain, G-beta repeat |
| Beta-prop_THOC3 | PF25174 | 114 - 254 | 1e-09 | THOC3 beta-propeller domain |
| Beta-prop_WDR3_1st | PF25173 | 174 - 328 | 2.3e-20 | WDR3 first beta-propeller domain |
| WD40_CDC20-Fz | PF24807 | 174 - 324 | 2.7e-10 | CDC20/Fizzy WD40 domain |
| WD40_WDHD1_1st | PF24817 | 174 - 401 | 2.4e-11 | WDHD1 first WD40 domain |
| Beta-prop_TEP1_2nd | PF25047 | 179 - 326 | 7e-09 | TEP-1 second beta-propeller |
| Beta-prop_IP5PC_F | PF23754 | 204 - 294 | 3.8e-07 | IP5P C-F beta-propeller |
| WD40_Prp19 | PF24814 | 239 - 362 | 3.4e-11 | Prp19 WD40 domain |
| Beta-prop_WDR3_2nd | PF25172 | 240 - 314 | 9.4e-09 | WDR3 second beta-propeller domain |
| Beta-prop_SCAP | PF24017 | 245 - 327 | 5.1e-11 | SCAP Beta-propeller |
| WDR55 | PF24796 | 245 - 366 | 1e-05 | WDR55 |
| Beta-prop_THOC3 | PF25174 | 259 - 402 | 7.9e-16 | THOC3 beta-propeller domain |
| WD40_Prp19 | PF24814 | 260 - 400 | 2.6e-11 | Prp19 WD40 domain |
| WD40 | PF00400 | 278 - 312 | 1.3e-06 | WD domain, G-beta repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 597, 1064 |
| AatII | GACGTC | 1 cut(s) | 875 |
| Acc36I | ACCTGC | 2 cut(s) | 61, 1219 |
| AccB1I | GGYRCC | 1 cut(s) | 291 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 613 |
| AciI | CCGC | 2 cut(s) | 528, 1069 |
| AcoI | YGGCCR | 1 cut(s) | 733 |
| AcsI | RAATTY | 2 cut(s) | 19, 575 |
| AcuI | CTGAAG | 2 cut(s) | 507, 1044 |
| AcyI | GRCGYC | 1 cut(s) | 872 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 361, 613, 721 |
| AgsI | TTSAA | 3 cut(s) | 962, 983, 1139 |
| AjnI | CCWGG | 1 cut(s) | 1147 |
| AluBI | AGCT | 2 cut(s) | 346, 587 |
| AluI | AGCT | 2 cut(s) | 346, 587 |
| Alw21I | GWGCWC | 1 cut(s) | 893 |
| Alw26I | GTCTC | 1 cut(s) | 879 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 791 |
| AoxI | GGCC | 5 cut(s) | 165, 240, 352, 733, 1144 |
| ApeKI | GCWGC | 4 cut(s) | 413, 462, 495, 743 |
| ApoI | RAATTY | 2 cut(s) | 19, 575 |
| AspLEI | GCGC | 1 cut(s) | 533 |
| AspS9I | GGNCC | 3 cut(s) | 590, 796, 1145 |
| AsuC2I | CCSGG | 1 cut(s) | 131 |
| AsuHPI | GGTGA | 2 cut(s) | 467, 704 |
| AvaII | GGWCC | 2 cut(s) | 590, 796 |
| AxyI | CCTNAGG | 1 cut(s) | 387 |
| BaeGI | GKGCMC | 1 cut(s) | 296 |
| BalI | TGGCCA | 1 cut(s) | 735 |
| BanI | GGYRCC | 1 cut(s) | 291 |
| BbsI | GAAGAC | 3 cut(s) | 55, 986, 993 |
| Bbv12I | GWGCWC | 1 cut(s) | 893 |
| BbvI | GCAGC | 4 cut(s) | 400, 474, 482, 730 |
| BccI | CCATC | 3 cut(s) | 263, 317, 1093 |
| BciT130I | CCWGG | 1 cut(s) | 1149 |
| BcnI | CCSGG | 1 cut(s) | 131 |
| BcoDI | GTCTC | 1 cut(s) | 879 |
| BfaI | CTAG | 1 cut(s) | 584 |
| BfmI | CTRYAG | 1 cut(s) | 1212 |
| BfoI | RGCGCY | 1 cut(s) | 534 |
| BfuAI | ACCTGC | 2 cut(s) | 61, 1219 |
| BisI | GCNGC | 5 cut(s) | 414, 463, 496, 529, 744 |
| BlsI | GCNGC | 5 cut(s) | 415, 464, 497, 530, 745 |
| Bme1390I | CCNGG | 2 cut(s) | 131, 1149 |
| Bme18I | GGWCC | 2 cut(s) | 590, 796 |
| BmgT120I | GGNCC | 3 cut(s) | 590, 796, 1145 |
| BmiI | GGNNCC | 5 cut(s) | 116, 293, 314, 427, 1209 |
| BmrFI | CCNGG | 2 cut(s) | 131, 1149 |
| BmrI | ACTGGG | 1 cut(s) | 1176 |
| BmsI | GCATC | 4 cut(s) | 83, 682, 853, 1009 |
| BmuI | ACTGGG | 1 cut(s) | 1176 |
| BpiI | GAAGAC | 3 cut(s) | 55, 986, 993 |
| BpmI | CTGGAG | 1 cut(s) | 1170 |
| BpuEI | CTTGAG | 1 cut(s) | 83 |
| BpuMI | CCSGG | 1 cut(s) | 131 |
| BsaHI | GRCGYC | 1 cut(s) | 872 |
| BsaJI | CCNNGG | 5 cut(s) | 316, 336, 349, 612, 1147 |
| BsaWI | WCCGGW | 1 cut(s) | 371 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 361, 613, 721 |
| Bse118I | RCCGGY | 1 cut(s) | 111 |
| Bse1I | ACTGG | 4 cut(s) | 457, 1034, 1171, 1183 |
| Bse21I | CCTNAGG | 1 cut(s) | 387 |
| BseBI | CCWGG | 1 cut(s) | 1149 |
| BseDI | CCNNGG | 5 cut(s) | 316, 336, 349, 612, 1147 |
| BseGI | GGATG | 2 cut(s) | 1085, 1177 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 361, 613, 721 |
| BseMII | CTCAG | 4 cut(s) | 22, 378, 742, 798 |
| BseNI | ACTGG | 4 cut(s) | 457, 1034, 1171, 1183 |
| BseRI | GAGGAG | 2 cut(s) | 173, 665 |
| BseSI | GKGCMC | 1 cut(s) | 296 |
| BseXI | GCAGC | 4 cut(s) | 400, 474, 482, 730 |
| BseYI | CCCAGC | 1 cut(s) | 641 |
| BshFI | GGCC | 5 cut(s) | 167, 242, 354, 735, 1146 |
| BshNI | GGYRCC | 1 cut(s) | 291 |
| BsiHKAI | GWGCWC | 1 cut(s) | 893 |
| BsiSI | CCGG | 3 cut(s) | 112, 131, 372 |
| BslFI | GGGAC | 1 cut(s) | 455 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 361, 613, 721 |
| BsmAI | GTCTC | 1 cut(s) | 879 |
| BsmBI | CGTCTC | 1 cut(s) | 879 |
| BsmFI | GGGAC | 1 cut(s) | 455 |
| BsmI | GAATGC | 2 cut(s) | 464, 1017 |
| BsnI | GGCC | 5 cut(s) | 167, 242, 354, 735, 1146 |
| Bsp1286I | GDGCHC | 2 cut(s) | 296, 893 |
| Bsp143I | GATC | 1 cut(s) | 900 |
| Bsp19I | CCATGG | 1 cut(s) | 612 |
| BspACI | CCGC | 2 cut(s) | 528, 1069 |
| BspANI | GGCC | 5 cut(s) | 167, 242, 354, 735, 1146 |
| BspCNI | CTCAG | 4 cut(s) | 21, 379, 741, 797 |
| BspLI | GGNNCC | 5 cut(s) | 116, 293, 314, 427, 1209 |
| BspMAI | CTGCAG | 1 cut(s) | 1216 |
| BspMI | ACCTGC | 2 cut(s) | 61, 1219 |
| BspT107I | GGYRCC | 1 cut(s) | 291 |
| BsrFI | RCCGGY | 1 cut(s) | 111 |
| BsrI | ACTGG | 4 cut(s) | 457, 1034, 1171, 1183 |
| BssAI | RCCGGY | 1 cut(s) | 111 |
| BssECI | CCNNGG | 5 cut(s) | 316, 336, 349, 612, 1147 |
| BssMI | GATC | 1 cut(s) | 900 |
| BssNI | GRCGYC | 1 cut(s) | 872 |
| BssT1I | CCWWGG | 3 cut(s) | 336, 349, 612 |
| Bst2UI | CCWGG | 1 cut(s) | 1149 |
| Bst4CI | ACNGT | 6 cut(s) | 67, 193, 308, 430, 992, 1158 |
| BstACI | GRCGYC | 1 cut(s) | 872 |
| BstC8I | GCNNGC | 1 cut(s) | 493 |
| BstDEI | CTNAG | 4 cut(s) | 8, 387, 728, 784 |
| BstDSI | CCRYGG | 2 cut(s) | 316, 612 |
| BstF5I | GGATG | 2 cut(s) | 1085, 1177 |
| BstH2I | RGCGCY | 1 cut(s) | 534 |
| BstHHI | GCGC | 1 cut(s) | 533 |
| BstKTI | GATC | 1 cut(s) | 903 |
| BstMAI | GTCTC | 1 cut(s) | 879 |
| BstMBI | GATC | 1 cut(s) | 900 |
| BstNI | CCWGG | 1 cut(s) | 1149 |
| BstSCI | CCNGG | 2 cut(s) | 129, 1147 |
| BstSFI | CTRYAG | 1 cut(s) | 1212 |
| BstSLI | GKGCMC | 1 cut(s) | 296 |
| BstV1I | GCAGC | 4 cut(s) | 400, 474, 482, 730 |
| BstV2I | GAAGAC | 3 cut(s) | 55, 986, 993 |
| Bsu36I | CCTNAGG | 1 cut(s) | 387 |
| BsuRI | GGCC | 5 cut(s) | 167, 242, 354, 735, 1146 |
| BtgI | CCRYGG | 2 cut(s) | 316, 612 |
| BtsCI | GGATG | 2 cut(s) | 1085, 1177 |
| BtsI | GCAGTG | 1 cut(s) | 738 |
| BtsIMutI | CAGTG | 3 cut(s) | 450, 736, 738 |
| BveI | ACCTGC | 2 cut(s) | 61, 1219 |
| Cac8I | GCNNGC | 1 cut(s) | 493 |
| CaiI | CAGNNNCTG | 1 cut(s) | 791 |
| CfoI | GCGC | 1 cut(s) | 533 |
| Cfr10I | RCCGGY | 1 cut(s) | 111 |
| Cfr13I | GGNCC | 3 cut(s) | 590, 796, 1145 |
| CviAII | CATG | 5 cut(s) | 203, 608, 613, 906, 1016 |
| DdeI | CTNAG | 4 cut(s) | 8, 387, 728, 784 |
| DpnI | GATC | 1 cut(s) | 902 |
| DpnII | GATC | 1 cut(s) | 900 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 597, 1064 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 597, 1064 |
| EaeI | YGGCCR | 1 cut(s) | 733 |
| Eco130I | CCWWGG | 3 cut(s) | 336, 349, 612 |
| Eco47I | GGWCC | 2 cut(s) | 590, 796 |
| Eco57I | CTGAAG | 2 cut(s) | 507, 1044 |
| Eco81I | CCTNAGG | 1 cut(s) | 387 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1145 |
| EcoRI | GAATTC | 1 cut(s) | 19 |
| EcoRII | CCWGG | 1 cut(s) | 1147 |
| EcoT14I | CCWWGG | 3 cut(s) | 336, 349, 612 |
| EcoT22I | ATGCAT | 1 cut(s) | 1017 |
| ErhI | CCWWGG | 3 cut(s) | 336, 349, 612 |
| Esp3I | CGTCTC | 1 cut(s) | 879 |
| FaeI | CATG | 5 cut(s) | 206, 611, 616, 909, 1019 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 40, 72, 978, 1010 |
| FaqI | GGGAC | 1 cut(s) | 455 |
| FatI | CATG | 5 cut(s) | 202, 607, 612, 905, 1015 |
| Fnu4HI | GCNGC | 5 cut(s) | 414, 463, 496, 529, 744 |
| FokI | GGATG | 2 cut(s) | 1072, 1184 |
| Fsp4HI | GCNGC | 5 cut(s) | 414, 463, 496, 529, 744 |
| FspBI | CTAG | 1 cut(s) | 584 |
| GlaI | GCGC | 1 cut(s) | 532 |
| GluI | GCNGC | 5 cut(s) | 414, 463, 496, 529, 744 |
| GsaI | CCCAGC | 1 cut(s) | 645 |
| GsuI | CTGGAG | 1 cut(s) | 1170 |
| HaeII | RGCGCY | 1 cut(s) | 534 |
| HaeIII | GGCC | 5 cut(s) | 167, 242, 354, 735, 1146 |
| HapII | CCGG | 3 cut(s) | 112, 131, 372 |
| HhaI | GCGC | 1 cut(s) | 533 |
| Hin1I | GRCGYC | 1 cut(s) | 872 |
| Hin1II | CATG | 5 cut(s) | 206, 611, 616, 909, 1019 |
| Hin6I | GCGC | 1 cut(s) | 531 |
| HinP1I | GCGC | 1 cut(s) | 531 |
| HinfI | GANTC | 7 cut(s) | 27, 142, 182, 563, 703, 817, 844 |
| HpaII | CCGG | 3 cut(s) | 112, 131, 372 |
| HphI | GGTGA | 2 cut(s) | 467, 704 |
| Hpy166II | GTNNAC | 3 cut(s) | 796, 936, 1184 |
| Hpy188I | TCNGA | 5 cut(s) | 61, 181, 691, 862, 900 |
| Hpy188III | TCNNGA | 5 cut(s) | 24, 100, 386, 821, 1008 |
| Hpy8I | GTNNAC | 3 cut(s) | 796, 936, 1184 |
| HpyAV | CCTTC | 3 cut(s) | 35, 157, 355 |
| HpyCH4III | ACNGT | 6 cut(s) | 67, 193, 308, 430, 992, 1158 |
| HpyCH4IV | ACGT | 1 cut(s) | 872 |
| HpyCH4V | TGCA | 8 cut(s) | 72, 255, 304, 447, 462, 1015, 1115, 1214 |
| HpyF3I | CTNAG | 4 cut(s) | 8, 387, 728, 784 |
| HpySE526I | ACGT | 1 cut(s) | 872 |
| Hsp92I | GRCGYC | 1 cut(s) | 872 |
| Hsp92II | CATG | 5 cut(s) | 206, 611, 616, 909, 1019 |
| HspAI | GCGC | 1 cut(s) | 531 |
| Kzo9I | GATC | 1 cut(s) | 900 |
| LmnI | GCTCC | 2 cut(s) | 351, 888 |
| Lsp1109I | GCAGC | 4 cut(s) | 400, 474, 482, 730 |
| LweI | GCATC | 4 cut(s) | 83, 682, 853, 1009 |
| MaeI | CTAG | 1 cut(s) | 584 |
| MaeII | ACGT | 1 cut(s) | 872 |
| MaeIII | GTNAC | 1 cut(s) | 868 |
| MalI | GATC | 1 cut(s) | 902 |
| MboI | GATC | 1 cut(s) | 900 |
| MboII | GAAGA | 9 cut(s) | 57, 60, 324, 974, 986, 995, 998, 1037, 1116 |
| MhlI | GDGCHC | 2 cut(s) | 296, 893 |
| MlsI | TGGCCA | 1 cut(s) | 735 |
| MluCI | AATT | 4 cut(s) | 19, 375, 575, 1060 |
| MluNI | TGGCCA | 1 cut(s) | 735 |
| MlyI | GAGTC | 4 cut(s) | 21, 136, 572, 838 |
| MmeI | TCCRAC | 3 cut(s) | 745, 866, 1185 |
| Mox20I | TGGCCA | 1 cut(s) | 735 |
| Mph1103I | ATGCAT | 1 cut(s) | 1017 |
| MscI | TGGCCA | 1 cut(s) | 735 |
| MseI | TTAA | 4 cut(s) | 152, 195, 207, 758 |
| MslI | CAYNNNNRTG | 2 cut(s) | 207, 861 |
| Msp20I | TGGCCA | 1 cut(s) | 735 |
| MspI | CCGG | 3 cut(s) | 112, 131, 372 |
| MspR9I | CCNGG | 2 cut(s) | 131, 1149 |
| Mva1269I | GAATGC | 2 cut(s) | 464, 1017 |
| MvaI | CCWGG | 1 cut(s) | 1149 |
| NciI | CCSGG | 1 cut(s) | 131 |
| NcoI | CCATGG | 1 cut(s) | 612 |
| NdeII | GATC | 1 cut(s) | 900 |
| NlaIII | CATG | 5 cut(s) | 206, 611, 616, 909, 1019 |
| NlaIV | GGNNCC | 5 cut(s) | 116, 293, 314, 427, 1209 |
| NmuCI | GTSAC | 1 cut(s) | 868 |
| NsiI | ATGCAT | 1 cut(s) | 1017 |
| PctI | GAATGC | 2 cut(s) | 464, 1017 |
| PfeI | GAWTC | 3 cut(s) | 182, 703, 817 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 613 |
| PkrI | GCNGC | 5 cut(s) | 415, 464, 497, 530, 745 |
| PleI | GAGTC | 4 cut(s) | 21, 136, 571, 838 |
| PpsI | GAGTC | 4 cut(s) | 21, 136, 571, 838 |
| Psp6I | CCWGG | 1 cut(s) | 1147 |
| PspFI | CCCAGC | 1 cut(s) | 641 |
| PspGI | CCWGG | 1 cut(s) | 1147 |
| PspN4I | GGNNCC | 5 cut(s) | 116, 293, 314, 427, 1209 |
| PspPI | GGNCC | 3 cut(s) | 590, 796, 1145 |
| PstI | CTGCAG | 1 cut(s) | 1216 |
| PstNI | CAGNNNCTG | 1 cut(s) | 791 |
| RseI | CAYNNNNRTG | 2 cut(s) | 207, 861 |
| SaqAI | TTAA | 4 cut(s) | 152, 195, 207, 758 |
| SatI | GCNGC | 5 cut(s) | 414, 463, 496, 529, 744 |
| Sau3AI | GATC | 1 cut(s) | 900 |
| Sau96I | GGNCC | 3 cut(s) | 590, 796, 1145 |
| SchI | GAGTC | 4 cut(s) | 21, 136, 572, 838 |
| ScrFI | CCNGG | 2 cut(s) | 131, 1149 |
| SduI | GDGCHC | 2 cut(s) | 296, 893 |
| SetI | ASST | 7 cut(s) | 55, 348, 589, 595, 875, 933, 1213 |
| SfaNI | GCATC | 4 cut(s) | 83, 682, 853, 1009 |
| SfcI | CTRYAG | 1 cut(s) | 1212 |
| SinI | GGWCC | 2 cut(s) | 590, 796 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 207, 861 |
| SmlI | CTYRAG | 1 cut(s) | 98 |
| SmoI | CTYRAG | 1 cut(s) | 98 |
| Sse9I | AATT | 4 cut(s) | 19, 375, 575, 1060 |
| SsiI | CCGC | 2 cut(s) | 528, 1069 |
| SspI | AATATT | 1 cut(s) | 559 |
| SspMI | CTAG | 1 cut(s) | 584 |
| StyD4I | CCNGG | 2 cut(s) | 129, 1147 |
| StyI | CCWWGG | 3 cut(s) | 336, 349, 612 |
| TaaI | ACNGT | 6 cut(s) | 67, 193, 308, 430, 992, 1158 |
| TaiI | ACGT | 1 cut(s) | 875 |
| TaqI | TCGA | 1 cut(s) | 17 |
| TasI | AATT | 4 cut(s) | 19, 375, 575, 1060 |
| TauI | GCSGC | 1 cut(s) | 531 |
| TfiI | GAWTC | 3 cut(s) | 182, 703, 817 |
| Tru1I | TTAA | 4 cut(s) | 152, 195, 207, 758 |
| Tru9I | TTAA | 4 cut(s) | 152, 195, 207, 758 |
| TscAI | CASTG | 3 cut(s) | 457, 736, 745 |
| TseFI | GTSAC | 1 cut(s) | 868 |
| TseI | GCWGC | 4 cut(s) | 413, 462, 495, 743 |
| Tsp45I | GTSAC | 1 cut(s) | 868 |
| TspDTI | ATGAA | 2 cut(s) | 191, 1188 |
| TspGWI | ACGGA | 3 cut(s) | 305, 438, 1180 |
| TspRI | CASTG | 3 cut(s) | 457, 736, 745 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 613 |
| VpaK11BI | GGWCC | 2 cut(s) | 590, 796 |
| XapI | RAATTY | 2 cut(s) | 19, 575 |
| XspI | CTAG | 1 cut(s) | 584 |
| ZraI | GACGTC | 1 cut(s) | 873 |
| Zsp2I | ATGCAT | 1 cut(s) | 1017 |