Rw3G023110

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000488
Physical Location & Seq
Forward (+)
28779667 .. 28780755
1089 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G023110.1

Sequence Viewer

Length: 906 bp
ATGGAAGGATCCGTTTATGCAAGAAGATCTACTTCCGAAACCGTTTGCAAGTTTTGGGTGATGTGCAGATGCCTCAAGAAAAAGTGTCGATTCCTACACGCTTATCCAAATCAAAAGTTTCTTGCATTAATAGAGGAGAAGGGAAAATCTATGGGGAAAGCATCTGATTCTGTTAATGTTATGGTTGGGAATAACACTGATACCCATAAAGGGAAAGCGGCCAAAGCAGTTTGCAAGTTCTGGGCAGATGGAAAGTGTGTAAGACGTGAAGGTGCCCTTATTTGCACAGTTGGTTCCGTGGAGATGGCTTTTCTTCCTTGGAAAAATTCCAATGCCATAATTGTGCTTCTGGAGAGAAGTAGCAATCTTTATTCTCCTGCCAAAGATGAAACAGTTAGGGTTTGGGACTGCAATACAGGTCAATGCAGCAAGGTAATCAATCTTGGTGCTGAAGTAGGCTGCTTGATTAGTAAGGGTGCATGGGCATGGAATATTGAGTCCAATGCTGAATTTACCTTAGCTGGACCTGTTGGTAAAGTCCATGCCATGGAAGTTGGGAATGATATGGTATTCGCAGGGACAGAGAAAGGTGTTATAAGTGTGGAATGGCAAAGCCTGCTCTCAGTGGCCACTACTGCTGTGGTTTCTTTAAGGGTTGGAAATATTAGACTCTACTCATGTTCTGTGGACCATACAATAAGAGTGTGGAATCTGGACACTTGGAGTGAGGCATGCAACATTGAAAAAATCTACACTCACACTGAAGAACACGGTCTTCTTGCTCTCTCTGGAATGTATGATGTTAAAGATAAACCATTCCTACTTTGCTCATCAAAAGACAATTCTGTCTGCATATATGATTTGCCATCCTTTGATGAGAAGGGAAGATTATTTGCAAAACGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04120 map03040 map04120
Pfam Domains
Protein Families
WD40 zf-CCCH

Protein Analysis

301

Amino Acids

33.35

Weight (kDa)

8.58

Isoelectric Point (pI)

36.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000488)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25440 AT4G25440 AT4G25440 AT5G51980 AT5G51980
fragaria_vesca FvH4_2g11580 FvH4_3g29280 FvH4_4g05980 FvH4_7g28880 FvH4_7g28880
malus_domestica MD01G1195600.v1.1 MD02G1195200.v1.1 MD07G1262400.v1.1
prunus_persica Prupe.2G102200_v2.0.a1 Prupe.2G102200_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G288900_v2.0.a1
pyrus_communis pycom01g20620 pycom02g15900 pycom07g24140
rosa_chinensis RchiOBHm_Chr1g0376561 RchiOBHm_Chr3g0483051 RchiOBHm_Chr3g0483061 RchiOBHm_Chr3g0483601 RchiOBHm_Chr3g0483611 RchiOBHm_Chr4g0402321 RchiOBHm_Chr6g0270771
rosa_laevigata RLG00000009464 RLG00000009486 RLG00000013770 RLG00000023264 RLG00000023325 RLG00000026601 RLG00000035049
rosa_multiflora Rmu_co8110388.1_g000001 Rmu_co8419409.1_g000001 Rmu_sc0000555.1_g000012 Rmu_sc0000642.1_g000020 Rmu_sc0001308.1_g000010 Rmu_sc0002963.1_g000021 Rmu_sc0004788.1_g000012 Rmu_sc0005594.1_g000015 Rmu_sc0022770.1_g000001
rosa_roxburghii Rroxscaffold_4G00282000 Rroxscaffold_5G00341940 Rroxscaffold_5G00341950 Rroxscaffold_6G00398950 Rroxscaffold_7G00197610
rosa_rugosa Rorug01G0396500 Rorug03G0207400 Rorug03G0346000 Rorug04G0166800 Rorug06G0056400 Rorug06G0056500
rosa_samantha Rh1AG412700 Rh1BG372400 Rh1BG372600 Rh1CG386200 Rh1CG386500 Rh1DG403300 Rh1DG403500 Rh3AG255500 Rh3AG255600 Rh3BG292600 Rh3CG290200 Rh3DG278800 Rh3DG286100 Rh4AG075500 Rh4AG111600 Rh4BG071900 Rh4BG072100 Rh4BG231300 Rh4CG080200 Rh4CG080300 Rh4DG069300 Rh4DG069500 Rh6AG175700 Rh6BG178900 Rh6CG175200 Rh6DG167500
rosa_wichuraiana Rw1G036190 Rw3G023110 Rw4G006070 Rw6G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 596
AasI GACNNNNNNGTC 1 cut(s) 845
AccB1I GGYRCC 1 cut(s) 272
AccB7I CCANNNNNTGG 1 cut(s) 547
AciI CCGC 1 cut(s) 218
AclWI GGATC 2 cut(s) 3, 16
AcoI YGGCCR 2 cut(s) 219, 627
AcsI RAATTY 2 cut(s) 325, 509
AcuI CTGAAG 2 cut(s) 471, 783
AfiI CCNNNNNNNGG 2 cut(s) 210, 547
AgsI TTSAA 1 cut(s) 743
AjiI CACGTC 1 cut(s) 266
AluBI AGCT 1 cut(s) 521
AluI AGCT 1 cut(s) 521
AlwI GGATC 2 cut(s) 3, 16
AoxI GGCC 2 cut(s) 219, 627
ApeKI GCWGC 2 cut(s) 426, 459
ApoI RAATTY 2 cut(s) 325, 509
AseI ATTAAT 1 cut(s) 128
AspS9I GGNCC 2 cut(s) 524, 688
AsuHPI GGTGA 1 cut(s) 70
AvaII GGWCC 2 cut(s) 524, 688
BaeGI GKGCMC 1 cut(s) 277
BalI TGGCCA 1 cut(s) 629
BamHI GGATCC 1 cut(s) 8
BanI GGYRCC 1 cut(s) 272
BbsI GAAGAC 1 cut(s) 767
BbvI GCAGC 2 cut(s) 438, 446
BccI CCATC 3 cut(s) 242, 298, 874
BglII AGATCT 1 cut(s) 26
BisI GCNGC 3 cut(s) 219, 427, 460
BlsI GCNGC 3 cut(s) 220, 428, 461
Bme18I GGWCC 2 cut(s) 524, 688
BmgBI CACGTC 1 cut(s) 266
BmgT120I GGNCC 2 cut(s) 524, 688
BmiI GGNNCC 3 cut(s) 10, 274, 295
BmsI GCATC 2 cut(s) 59, 170
BpiI GAAGAC 1 cut(s) 767
BpmI CTGGAG 1 cut(s) 371
Bpu10I CCTNAGC 1 cut(s) 517
BpuEI CTTGAG 1 cut(s) 59
BsaJI CCNNGG 3 cut(s) 297, 317, 546
Bsc4I CCNNNNNNNGG 2 cut(s) 210, 547
BseDI CCNNGG 3 cut(s) 297, 317, 546
BseGI GGATG 1 cut(s) 866
BseLI CCNNNNNNNGG 2 cut(s) 210, 547
BseMII CTCAG 1 cut(s) 636
BseRI GAGGAG 1 cut(s) 149
BseSI GKGCMC 1 cut(s) 277
BseXI GCAGC 2 cut(s) 438, 446
BsgI GTGCAG 1 cut(s) 85
BshFI GGCC 2 cut(s) 221, 629
BshNI GGYRCC 1 cut(s) 272
BslFI GGGAC 2 cut(s) 419, 592
BslI CCNNNNNNNGG 2 cut(s) 210, 547
BsmFI GGGAC 2 cut(s) 419, 592
BsnI GGCC 2 cut(s) 221, 629
Bsp1286I GDGCHC 1 cut(s) 277
Bsp143I GATC 2 cut(s) 8, 26
Bsp19I CCATGG 1 cut(s) 546
BspACI CCGC 1 cut(s) 218
BspANI GGCC 2 cut(s) 221, 629
BspCNI CTCAG 1 cut(s) 635
BspLI GGNNCC 3 cut(s) 10, 274, 295
BspPI GGATC 2 cut(s) 3, 16
BspT107I GGYRCC 1 cut(s) 272
BssECI CCNNGG 3 cut(s) 297, 317, 546
BssMI GATC 2 cut(s) 8, 26
BssT1I CCWWGG 2 cut(s) 317, 546
Bst4CI ACNGT 4 cut(s) 43, 289, 394, 773
BstAPI GCANNNNNTGC 1 cut(s) 616
BstC8I GCNNGC 2 cut(s) 617, 733
BstDEI CTNAG 2 cut(s) 517, 622
BstDSI CCRYGG 2 cut(s) 297, 546
BstF5I GGATG 1 cut(s) 866
BstKTI GATC 2 cut(s) 11, 29
BstMBI GATC 2 cut(s) 8, 26
BstMWI GCNNNNNNNGC 3 cut(s) 224, 616, 635
BstNSI RCATGY 1 cut(s) 735
BstSLI GKGCMC 1 cut(s) 277
BstV1I GCAGC 2 cut(s) 438, 446
BstV2I GAAGAC 1 cut(s) 767
BstX2I RGATCY 2 cut(s) 8, 26
BstYI RGATCY 2 cut(s) 8, 26
BsuRI GGCC 2 cut(s) 221, 629
BtgI CCRYGG 2 cut(s) 297, 546
BtrI CACGTC 1 cut(s) 266
BtsCI GGATG 1 cut(s) 866
BtsIMutI CAGTG 3 cut(s) 195, 630, 759
Cac8I GCNNGC 2 cut(s) 617, 733
Cfr13I GGNCC 2 cut(s) 524, 688
CviAII CATG 6 cut(s) 480, 486, 542, 547, 678, 732
CviJI RGCY 6 cut(s) 221, 308, 459, 521, 615, 629
CviKI_1 RGCY 6 cut(s) 221, 308, 459, 521, 615, 629
DdeI CTNAG 2 cut(s) 517, 622
DpnI GATC 2 cut(s) 10, 28
DpnII GATC 2 cut(s) 8, 26
DrdI GACNNNNNNGTC 1 cut(s) 845
DseDI GACNNNNNNGTC 1 cut(s) 845
EaeI YGGCCR 2 cut(s) 219, 627
Eco130I CCWWGG 2 cut(s) 317, 546
Eco47I GGWCC 2 cut(s) 524, 688
Eco57I CTGAAG 2 cut(s) 471, 783
EcoT14I CCWWGG 2 cut(s) 317, 546
ErhI CCWWGG 2 cut(s) 317, 546
FaeI CATG 6 cut(s) 483, 489, 545, 550, 681, 735
FalI AAGNNNNNCTT 4 cut(s) 16, 48, 261, 293
FaqI GGGAC 2 cut(s) 419, 592
FatI CATG 6 cut(s) 479, 485, 541, 546, 677, 731
Fnu4HI GCNGC 3 cut(s) 219, 427, 460
FokI GGATG 1 cut(s) 853
Fsp4HI GCNGC 3 cut(s) 219, 427, 460
GluI GCNGC 3 cut(s) 219, 427, 460
GsuI CTGGAG 1 cut(s) 371
HaeIII GGCC 2 cut(s) 221, 629
Hin1II CATG 6 cut(s) 483, 489, 545, 550, 681, 735
HinfI GANTC 5 cut(s) 90, 167, 497, 669, 709
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 1 cut(s) 688
Hpy188I TCNGA 2 cut(s) 37, 166
Hpy188III TCNNGA 4 cut(s) 76, 350, 713, 789
Hpy8I GTNNAC 1 cut(s) 688
HpyAV CCTTC 3 cut(s) 133, 263, 874
HpyCH4III ACNGT 4 cut(s) 43, 289, 394, 773
HpyCH4IV ACGT 1 cut(s) 265
HpyF10VI GCNNNNNNNGC 3 cut(s) 224, 616, 635
HpyF3I CTNAG 2 cut(s) 517, 622
HpySE526I ACGT 1 cut(s) 265
Hsp92II CATG 6 cut(s) 483, 489, 545, 550, 681, 735
Kzo9I GATC 2 cut(s) 8, 26
Lsp1109I GCAGC 2 cut(s) 438, 446
LweI GCATC 2 cut(s) 59, 170
MaeII ACGT 1 cut(s) 265
MalI GATC 2 cut(s) 10, 28
MboI GATC 2 cut(s) 8, 26
MboII GAAGA 5 cut(s) 36, 305, 767, 776, 897
MflI RGATCY 2 cut(s) 8, 26
MhlI GDGCHC 1 cut(s) 277
MlsI TGGCCA 1 cut(s) 629
MluCI AATT 4 cut(s) 325, 339, 509, 841
MluNI TGGCCA 1 cut(s) 629
MlyI GAGTC 2 cut(s) 506, 663
MmeI TCCRAC 1 cut(s) 637
MnlI CCTC 3 cut(s) 83, 127, 721
Mox20I TGGCCA 1 cut(s) 629
MscI TGGCCA 1 cut(s) 629
MseI TTAA 4 cut(s) 128, 174, 650, 804
MslI CAYNNNNRTG 2 cut(s) 341, 484
Msp20I TGGCCA 1 cut(s) 629
MwoI GCNNNNNNNGC 3 cut(s) 224, 616, 635
NcoI CCATGG 1 cut(s) 546
NdeII GATC 2 cut(s) 8, 26
NlaIII CATG 6 cut(s) 483, 489, 545, 550, 681, 735
NlaIV GGNNCC 3 cut(s) 10, 274, 295
NspI RCATGY 1 cut(s) 735
PaeI GCATGC 1 cut(s) 735
PfeI GAWTC 3 cut(s) 90, 167, 709
PflMI CCANNNNNTGG 1 cut(s) 547
PkrI GCNGC 3 cut(s) 220, 428, 461
PleI GAGTC 2 cut(s) 505, 663
PpsI GAGTC 2 cut(s) 505, 663
PshBI ATTAAT 1 cut(s) 128
PsiI TTATAA 1 cut(s) 596
PspN4I GGNNCC 3 cut(s) 10, 274, 295
PspPI GGNCC 2 cut(s) 524, 688
PsuI RGATCY 2 cut(s) 8, 26
RseI CAYNNNNRTG 2 cut(s) 341, 484
SaqAI TTAA 4 cut(s) 128, 174, 650, 804
SatI GCNGC 3 cut(s) 219, 427, 460
Sau3AI GATC 2 cut(s) 8, 26
Sau96I GGNCC 2 cut(s) 524, 688
SchI GAGTC 2 cut(s) 506, 663
SduI GDGCHC 1 cut(s) 277
SetI ASST 8 cut(s) 268, 274, 421, 435, 518, 523, 529, 592
SfaNI GCATC 2 cut(s) 59, 170
SinI GGWCC 2 cut(s) 524, 688
SmiMI CAYNNNNRTG 2 cut(s) 341, 484
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
SphI GCATGC 1 cut(s) 735
Sse9I AATT 4 cut(s) 325, 339, 509, 841
SsiI CCGC 1 cut(s) 218
SspI AATATT 2 cut(s) 493, 664
StyI CCWWGG 2 cut(s) 317, 546
TaaI ACNGT 4 cut(s) 43, 289, 394, 773
TaiI ACGT 1 cut(s) 268
TaqI TCGA 1 cut(s) 88
TasI AATT 4 cut(s) 325, 339, 509, 841
TauI GCSGC 1 cut(s) 221
TfiI GAWTC 3 cut(s) 90, 167, 709
Tru1I TTAA 4 cut(s) 128, 174, 650, 804
Tru9I TTAA 4 cut(s) 128, 174, 650, 804
TscAI CASTG 3 cut(s) 202, 630, 766
TseI GCWGC 2 cut(s) 426, 459
TspDTI ATGAA 1 cut(s) 402
TspGWI ACGGA 1 cut(s) 286
TspRI CASTG 3 cut(s) 202, 630, 766
Van91I CCANNNNNTGG 1 cut(s) 547
VpaK11BI GGWCC 2 cut(s) 524, 688
VspI ATTAAT 1 cut(s) 128
XapI RAATTY 2 cut(s) 325, 509
XceI RCATGY 1 cut(s) 735
XcmI CCANNNNNNNNNTGG 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.