RLG00000013770

Zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000488
Physical Location & Seq
Reverse (-)
40597061 .. 40600424
3364 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013770

Sequence Viewer

Length: 1410 bp
ATGGCCTTTGAGGCGGTAAAGAGGCCGGCGAATAGGTCAGATATATCGGTGTATTCTCGACCAGGACCAGGAGGAGGAGCTGTCTGCAAGTTCTTCCAGCAAGGAAAATGCACCAGGATAGACTGTAGGTTCTCCCACGTTGTAGCACCAACTCCACTCACAAACCCTCGAGCTTTGGTTTGGACCAAGGAGGAGGAGACTATTCCCAGAAGGGATAAAAACATAGAGAGCGTTGTTACGCACAAGACCGTCGCTACTCCGAAGAGAATGCCTGGCCAGCAAAGCATGGCTACTCAGAAGAGCATTGTTACACAGAAGAGCATGCCTAGCCAGCAAAGCCTGGCTACCAAGAATAGCATTGCCACCCAGAAAAGCATCGTTACTCAGCAAAGCATCCCTACCCAGAAAAATGATGCCATTCTGAAGCCCCTAGAAAAGGTCTGCAATTTCTGGGCTAATGGAAAATGTATGAAAGGTGATAGATGCCCATACCTGCATTCTTGGTTCCGTGGAGATGGGTTCTCCATGTTGGCAAAGCTCCAAGACCACAAGAAGACGGTCACTGGTATTGTGCTTCCCGAAGGATCTAGCAAGCTCTATTCAGCCAGTAAAGATGGAACAGTCAGAGTTTGGGACTGCCATACTGGTCGTTGTGGCAGTATAATTAATCTTGGTGGTGAAGCAGGTTGTTTATTTAGCAAGGGTCCATGGGTTTTTGCAGGTGCCCCAAATGTTGTTGAGGCATGGAACATTCAGACAAATGCTGAGTTTAGCCTAAGTGCACCTGCTGCGCAAGTGCATGCCATGGAGGTTGGTAATGAAATGCTCTTCGCTGGGACACAGGAAGGCGTTATATTGGTGTGGAAAGATGGTCCTGAGGACAATCCATTTCAGCTTGCTGCACCTCTGGAAGGCCACACCGGTGCTGTGGTATGCTTAAAAGTTGAAGCTGACAGGCTTTACTCGGGTTCTGTGGACCATACTATTAGGGCATGGGACCTTAATATGCTGCAGTCTATTATGACACTAAATGCACATTCTGATGTGGTGACGTCCCTTATTTGCTGGGGTCAATTTTTGATCTCATGCTCATTGGACTGCACAATAAAAGTCTGGGCTGAGAAAGGCAACTTGGAAGCAAAATACACTCACACTCAAGAACATGGTCTTCTTGGTCTTTCTGGAGTGGCAGATGCAGAAGCTAAGCCAGTCCTGTTATGCTCATGTAAAGACAATTCTGTTTGGCTCTACGAACTGCCGTCATTTGCTGAAAGGGGCAGATTATTTGCAAAAGAAGAAGTTGGGGCGATTCAGGTAGGACCTGGGGGACTATTCTTCAGTGGGGATGGAACTGGTCTCCTCTCTGTTTGGAAGTGGGTGGAACCTGGCCTCAAAGTAGAGTCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
WD40 zf-CCCH

Protein Analysis

470

Amino Acids

51.06

Weight (kDa)

8.28

Isoelectric Point (pI)

31.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf_CCCH_4 PF18345 148 - 166 9.3e-07 Zinc finger domain
Beta-prop_WDR3_1st PF25173 176 - 220 7.4e-07 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 176 - 222 2.1e-06 WDR5 beta-propeller domain
WD40_Prp19 PF24814 176 - 222 8.8e-06 Prp19 WD40 domain
WD40 PF00400 177 - 212 7.7e-06 WD domain, G-beta repeat
Beta-prop_THOC3 PF25174 178 - 353 1.1e-18 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 238 - 418 2.4e-19 WDR3 first beta-propeller domain
WD40_WDHD1_1st PF24817 240 - 457 2.6e-08 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 244 - 381 5.7e-16 WDR5 beta-propeller domain
WD40_CDC20-Fz PF24807 248 - 380 2.5e-09 CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd PF25047 269 - 381 1.7e-09 TEP-1 second beta-propeller
Beta-prop_SCAP PF24017 303 - 389 5.8e-06 SCAP Beta-propeller
Beta-prop_WDR3_2nd PF25172 305 - 374 8.7e-08 WDR3 second beta-propeller domain
WD40_Prp19 PF24814 309 - 457 1.5e-10 Prp19 WD40 domain
WD40 PF00400 338 - 372 9.7e-06 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000488)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25440 AT4G25440 AT4G25440 AT5G51980 AT5G51980
fragaria_vesca FvH4_2g11580 FvH4_3g29280 FvH4_4g05980 FvH4_7g28880 FvH4_7g28880
malus_domestica MD01G1195600.v1.1 MD02G1195200.v1.1 MD07G1262400.v1.1
prunus_persica Prupe.2G102200_v2.0.a1 Prupe.2G102200_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G288900_v2.0.a1
pyrus_communis pycom01g20620 pycom02g15900 pycom07g24140
rosa_chinensis RchiOBHm_Chr1g0376561 RchiOBHm_Chr3g0483051 RchiOBHm_Chr3g0483061 RchiOBHm_Chr3g0483601 RchiOBHm_Chr3g0483611 RchiOBHm_Chr4g0402321 RchiOBHm_Chr6g0270771
rosa_laevigata RLG00000009464 RLG00000009486 RLG00000013770 RLG00000023264 RLG00000023325 RLG00000026601 RLG00000035049
rosa_multiflora Rmu_co8110388.1_g000001 Rmu_co8419409.1_g000001 Rmu_sc0000555.1_g000012 Rmu_sc0000642.1_g000020 Rmu_sc0001308.1_g000010 Rmu_sc0002963.1_g000021 Rmu_sc0004788.1_g000012 Rmu_sc0005594.1_g000015 Rmu_sc0022770.1_g000001
rosa_roxburghii Rroxscaffold_4G00282000 Rroxscaffold_5G00341940 Rroxscaffold_5G00341950 Rroxscaffold_6G00398950 Rroxscaffold_7G00197610
rosa_rugosa Rorug01G0396500 Rorug03G0207400 Rorug03G0346000 Rorug04G0166800 Rorug06G0056400 Rorug06G0056500
rosa_samantha Rh1AG412700 Rh1BG372400 Rh1BG372600 Rh1CG386200 Rh1CG386500 Rh1DG403300 Rh1DG403500 Rh3AG255500 Rh3AG255600 Rh3BG292600 Rh3CG290200 Rh3DG278800 Rh3DG286100 Rh4AG075500 Rh4AG111600 Rh4BG071900 Rh4BG072100 Rh4BG231300 Rh4CG080200 Rh4CG080300 Rh4DG069300 Rh4DG069500 Rh6AG175700 Rh6BG178900 Rh6CG175200 Rh6DG167500
rosa_wichuraiana Rw1G036190 Rw3G023110 Rw4G006070 Rw6G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 710, 793
AatII GACGTC 1 cut(s) 1055
Acc16I TGCGCA 1 cut(s) 792
Acc36I ACCTGC 4 cut(s) 501, 674, 710, 793
AccB1I GGYRCC 1 cut(s) 722
AciI CCGC 1 cut(s) 14
AclWI GGATC 1 cut(s) 592
AcoI YGGCCR 1 cut(s) 274
AcuI CTGAAG 2 cut(s) 443, 1321
AcyI GRCGYC 1 cut(s) 1052
AfiI CCNNNNNNNGG 4 cut(s) 68, 74, 436, 911
AgeI ACCGGT 1 cut(s) 920
AgsI TTSAA 1 cut(s) 947
AjnI CCWGG 7 cut(s) 61, 67, 113, 271, 339, 1321, 1384
AjuI GAANNNNNNNTTGG 2 cut(s) 1115, 1147
AleI CACNNNNGTG 1 cut(s) 921
AluBI AGCT 7 cut(s) 80, 173, 538, 595, 895, 950, 1202
AluI AGCT 7 cut(s) 80, 173, 538, 595, 895, 950, 1202
Alw21I GWGCWC 1 cut(s) 784
Alw26I GTCTC 2 cut(s) 191, 1361
Alw44I GTGCAC 1 cut(s) 780
AlwI GGATC 1 cut(s) 592
Ama87I CYCGRG 2 cut(s) 168, 964
AoxI GGCC 5 cut(s) 3, 23, 274, 913, 1387
ApaLI GTGCAC 1 cut(s) 780
ApeKI GCWGC 3 cut(s) 788, 899, 1009
AseI ATTAAT 1 cut(s) 666
AsiGI ACCGGT 1 cut(s) 920
AspLEI GCGC 1 cut(s) 793
AspS9I GGNCC 7 cut(s) 65, 183, 704, 872, 976, 997, 1319
AsuHPI GGTGA 3 cut(s) 488, 689, 1060
AvaI CYCGRG 2 cut(s) 168, 964
AvaII GGWCC 7 cut(s) 65, 183, 704, 872, 976, 997, 1319
AxyI CCTNAGG 1 cut(s) 876
BaeGI GKGCMC 2 cut(s) 727, 784
BalI TGGCCA 1 cut(s) 276
BanI GGYRCC 1 cut(s) 722
BbsI GAAGAC 3 cut(s) 560, 1160, 1395
Bbv12I GWGCWC 1 cut(s) 784
BbvI GCAGC 3 cut(s) 775, 886, 996
BccI CCATC 4 cut(s) 509, 608, 863, 1340
BceAI ACGGC 1 cut(s) 1243
BcgI CGANNNNNNTGC 2 cut(s) 250, 284
BciT130I CCWGG 7 cut(s) 63, 69, 115, 273, 341, 1323, 1386
BcoDI GTCTC 2 cut(s) 191, 1361
BfaI CTAG 3 cut(s) 327, 431, 588
BfmI CTRYAG 2 cut(s) 124, 1010
BfuAI ACCTGC 4 cut(s) 501, 674, 710, 793
BglI GCCNNNNNGGC 1 cut(s) 11
BisI GCNGC 3 cut(s) 789, 900, 1010
BlpI GCTNAGC 1 cut(s) 1203
BlsI GCNGC 3 cut(s) 790, 901, 1011
Bme1390I CCNGG 7 cut(s) 63, 69, 115, 273, 341, 1323, 1386
Bme18I GGWCC 7 cut(s) 65, 183, 704, 872, 976, 997, 1319
BmeT110I CYCGRG 2 cut(s) 168, 964
BmgT120I GGNCC 7 cut(s) 65, 183, 704, 872, 976, 997, 1319
BmiI GGNNCC 5 cut(s) 506, 705, 724, 998, 1383
BmrFI CCNGG 7 cut(s) 63, 69, 115, 273, 341, 1323, 1386
BmsI GCATC 5 cut(s) 384, 402, 403, 473, 1183
BpiI GAAGAC 3 cut(s) 560, 1160, 1395
BpmI CTGGAG 1 cut(s) 1203
Bpu1102I GCTNAGC 1 cut(s) 1203
BpuEI CTTGAG 1 cut(s) 1140
BsaHI GRCGYC 1 cut(s) 1052
BsaI GGTCTC 1 cut(s) 1361
BsaJI CCNNGG 5 cut(s) 186, 508, 707, 804, 1322
BsaWI WCCGGW 1 cut(s) 920
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bsc4I CCNNNNNNNGG 4 cut(s) 68, 74, 436, 911
Bse118I RCCGGY 2 cut(s) 25, 920
Bse1I ACTGG 5 cut(s) 568, 606, 649, 1208, 1357
Bse21I CCTNAGG 1 cut(s) 876
Bse3DI GCAATG 1 cut(s) 357
BseBI CCWGG 7 cut(s) 63, 69, 115, 273, 341, 1323, 1386
BseDI CCNNGG 5 cut(s) 186, 508, 707, 804, 1322
BseGI GGATG 2 cut(s) 393, 1351
BseLI CCNNNNNNNGG 4 cut(s) 68, 74, 436, 911
BseMI GCAATG 1 cut(s) 357
BseMII CTCAG 5 cut(s) 308, 398, 756, 867, 1110
BseNI ACTGG 5 cut(s) 568, 606, 649, 1208, 1357
BseRI GAGGAG 5 cut(s) 87, 90, 206, 209, 1349
BseSI GKGCMC 2 cut(s) 727, 784
BseXI GCAGC 3 cut(s) 775, 886, 996
BseYI CCCAGC 2 cut(s) 833, 1065
BsgI GTGCAG 2 cut(s) 885, 1084
BshFI GGCC 5 cut(s) 5, 25, 276, 915, 1389
BshNI GGYRCC 1 cut(s) 722
BshTI ACCGGT 1 cut(s) 920
BsiHKAI GWGCWC 1 cut(s) 784
BsiHKCI CYCGRG 2 cut(s) 168, 964
BsiSI CCGG 2 cut(s) 26, 921
BslFI GGGAC 5 cut(s) 647, 850, 1010, 1039, 1341
BslI CCNNNNNNNGG 4 cut(s) 68, 74, 436, 911
BsmAI GTCTC 2 cut(s) 191, 1361
BsmFI GGGAC 5 cut(s) 647, 850, 1010, 1039, 1341
BsmI GAATGC 2 cut(s) 273, 496
BsnI GGCC 5 cut(s) 5, 25, 276, 915, 1389
Bso31I GGTCTC 1 cut(s) 1361
BsoBI CYCGRG 2 cut(s) 168, 964
Bsp1286I GDGCHC 2 cut(s) 727, 784
Bsp143I GATC 2 cut(s) 584, 1080
Bsp1720I GCTNAGC 1 cut(s) 1203
Bsp19I CCATGG 2 cut(s) 707, 804
BspACI CCGC 1 cut(s) 14
BspANI GGCC 5 cut(s) 5, 25, 276, 915, 1389
BspCNI CTCAG 5 cut(s) 307, 397, 757, 868, 1111
BspHI TCATGA 1 cut(s) 1406
BspLI GGNNCC 5 cut(s) 506, 705, 724, 998, 1383
BspMAI CTGCAG 1 cut(s) 1014
BspMI ACCTGC 4 cut(s) 501, 674, 710, 793
BspPI GGATC 1 cut(s) 592
BspQI GCTCTTC 3 cut(s) 293, 311, 833
BspT107I GGYRCC 1 cut(s) 722
BspTNI GGTCTC 1 cut(s) 1361
BsrDI GCAATG 1 cut(s) 357
BsrFI RCCGGY 2 cut(s) 25, 920
BsrI ACTGG 5 cut(s) 568, 606, 649, 1208, 1357
BssAI RCCGGY 2 cut(s) 25, 920
BssECI CCNNGG 5 cut(s) 186, 508, 707, 804, 1322
BssMI GATC 2 cut(s) 584, 1080
BssNI GRCGYC 1 cut(s) 1052
BssT1I CCWWGG 3 cut(s) 186, 707, 804
Bst2UI CCWGG 7 cut(s) 63, 69, 115, 273, 341, 1323, 1386
Bst4CI ACNGT 4 cut(s) 125, 250, 559, 622
Bst6I CTCTTC 4 cut(s) 257, 293, 311, 833
BstACI GRCGYC 1 cut(s) 1052
BstAPI GCANNNNNTGC 1 cut(s) 788
BstC8I GCNNGC 7 cut(s) 27, 278, 323, 332, 593, 801, 897
BstDEI CTNAG 7 cut(s) 294, 384, 765, 776, 876, 1119, 1203
BstDSI CCRYGG 3 cut(s) 508, 707, 804
BstENI CCTNNNNNAGG 2 cut(s) 434, 909
BstF5I GGATG 2 cut(s) 393, 1351
BstHHI GCGC 1 cut(s) 793
BstKTI GATC 2 cut(s) 587, 1083
BstMAI GTCTC 2 cut(s) 191, 1361
BstMBI GATC 2 cut(s) 584, 1080
BstMWI GCNNNNNNNGC 7 cut(s) 11, 277, 282, 327, 331, 336, 788
BstNI CCWGG 7 cut(s) 63, 69, 115, 273, 341, 1323, 1386
BstNSI RCATGY 2 cut(s) 325, 803
BstSCI CCNGG 7 cut(s) 61, 67, 113, 271, 339, 1321, 1384
BstSFI CTRYAG 2 cut(s) 124, 1010
BstSLI GKGCMC 2 cut(s) 727, 784
BstV1I GCAGC 3 cut(s) 775, 886, 996
BstV2I GAAGAC 3 cut(s) 560, 1160, 1395
BstX2I RGATCY 1 cut(s) 584
BstYI RGATCY 1 cut(s) 584
Bsu36I CCTNAGG 1 cut(s) 876
BsuRI GGCC 5 cut(s) 5, 25, 276, 915, 1389
BtgI CCRYGG 3 cut(s) 508, 707, 804
BtsCI GGATG 2 cut(s) 393, 1351
BtsIMutI CAGTG 2 cut(s) 561, 1345
BveI ACCTGC 4 cut(s) 501, 674, 710, 793
Cac8I GCNNGC 7 cut(s) 27, 278, 323, 332, 593, 801, 897
CciI TCATGA 1 cut(s) 1406
CfoI GCGC 1 cut(s) 793
Cfr10I RCCGGY 2 cut(s) 25, 920
Cfr13I GGNCC 7 cut(s) 65, 183, 704, 872, 976, 997, 1319
CspAI ACCGGT 1 cut(s) 920
DdeI CTNAG 7 cut(s) 294, 384, 765, 776, 876, 1119, 1203
DpnI GATC 2 cut(s) 586, 1082
DpnII GATC 2 cut(s) 584, 1080
EaeI YGGCCR 1 cut(s) 274
Eam1104I CTCTTC 4 cut(s) 257, 293, 311, 833
EarI CTCTTC 4 cut(s) 257, 293, 311, 833
Eco130I CCWWGG 3 cut(s) 186, 707, 804
Eco31I GGTCTC 1 cut(s) 1361
Eco47I GGWCC 7 cut(s) 65, 183, 704, 872, 976, 997, 1319
Eco57I CTGAAG 2 cut(s) 443, 1321
Eco81I CCTNAGG 1 cut(s) 876
Eco88I CYCGRG 2 cut(s) 168, 964
EcoNI CCTNNNNNAGG 2 cut(s) 434, 909
EcoO109I RGGNCCY 2 cut(s) 997, 1319
EcoRII CCWGG 7 cut(s) 61, 67, 113, 271, 339, 1321, 1384
EcoT14I CCWWGG 3 cut(s) 186, 707, 804
ErhI CCWWGG 3 cut(s) 186, 707, 804
FaqI GGGAC 5 cut(s) 647, 850, 1010, 1039, 1341
Fnu4HI GCNGC 3 cut(s) 789, 900, 1010
FokI GGATG 2 cut(s) 380, 1358
Fsp4HI GCNGC 3 cut(s) 789, 900, 1010
FspBI CTAG 3 cut(s) 327, 431, 588
FspI TGCGCA 1 cut(s) 792
GlaI GCGC 1 cut(s) 792
GluI GCNGC 3 cut(s) 789, 900, 1010
GsaI CCCAGC 2 cut(s) 837, 1069
GsuI CTGGAG 1 cut(s) 1203
HaeIII GGCC 5 cut(s) 5, 25, 276, 915, 1389
HapII CCGG 2 cut(s) 26, 921
HhaI GCGC 1 cut(s) 793
Hin1I GRCGYC 1 cut(s) 1052
Hin6I GCGC 1 cut(s) 791
HinP1I GCGC 1 cut(s) 791
HinfI GANTC 2 cut(s) 1309, 1400
HpaII CCGG 2 cut(s) 26, 921
HphI GGTGA 3 cut(s) 488, 689, 1060
Hpy166II GTNNAC 2 cut(s) 782, 976
Hpy188I TCNGA 7 cut(s) 40, 261, 297, 423, 626, 756, 1042
Hpy188III TCNNGA 7 cut(s) 57, 578, 875, 908, 1157, 1182, 1407
Hpy8I GTNNAC 2 cut(s) 782, 976
Hpy99I CGWCG 1 cut(s) 254
HpyAV CCTTC 4 cut(s) 204, 575, 839, 905
HpyCH4III ACNGT 4 cut(s) 125, 250, 559, 622
HpyCH4IV ACGT 2 cut(s) 138, 1052
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 277, 282, 327, 331, 336, 788
HpyF3I CTNAG 7 cut(s) 294, 384, 765, 776, 876, 1119, 1203
HpySE526I ACGT 2 cut(s) 138, 1052
Hsp92I GRCGYC 1 cut(s) 1052
HspAI GCGC 1 cut(s) 791
KroI GCCGGC 1 cut(s) 25
KroNI GCCGGC 1 cut(s) 27
Kzo9I GATC 2 cut(s) 584, 1080
LguI GCTCTTC 3 cut(s) 293, 311, 833
LmnI GCTCC 2 cut(s) 77, 543
Lsp1109I GCAGC 3 cut(s) 775, 886, 996
LweI GCATC 5 cut(s) 384, 402, 403, 473, 1183
MaeI CTAG 3 cut(s) 327, 431, 588
MaeII ACGT 2 cut(s) 138, 1052
MaeIII GTNAC 5 cut(s) 235, 307, 379, 559, 1048
MalI GATC 2 cut(s) 586, 1082
MboI GATC 2 cut(s) 584, 1080
MflI RGATCY 1 cut(s) 584
MhlI GDGCHC 2 cut(s) 727, 784
MlsI TGGCCA 1 cut(s) 276
MluCI AATT 4 cut(s) 445, 663, 1073, 1234
MluNI TGGCCA 1 cut(s) 276
MlyI GAGTC 1 cut(s) 1409
Mox20I TGGCCA 1 cut(s) 276
MroNI GCCGGC 1 cut(s) 25
MscI TGGCCA 1 cut(s) 276
MseI TTAA 3 cut(s) 666, 938, 1002
MslI CAYNNNNRTG 2 cut(s) 921, 1041
Msp20I TGGCCA 1 cut(s) 276
MspI CCGG 2 cut(s) 26, 921
MspR9I CCNGG 7 cut(s) 63, 69, 115, 273, 341, 1323, 1386
Mva1269I GAATGC 2 cut(s) 273, 496
MvaI CCWGG 7 cut(s) 63, 69, 115, 273, 341, 1323, 1386
MwoI GCNNNNNNNGC 7 cut(s) 11, 277, 282, 327, 331, 336, 788
NaeI GCCGGC 1 cut(s) 27
NcoI CCATGG 2 cut(s) 707, 804
NdeII GATC 2 cut(s) 584, 1080
NgoMIV GCCGGC 1 cut(s) 25
NlaIV GGNNCC 5 cut(s) 506, 705, 724, 998, 1383
NmuCI GTSAC 2 cut(s) 559, 1048
NsbI TGCGCA 1 cut(s) 792
NspI RCATGY 2 cut(s) 325, 803
OliI CACNNNNGTG 1 cut(s) 921
PaeI GCATGC 2 cut(s) 325, 803
PaeR7I CTCGAG 1 cut(s) 168
PagI TCATGA 1 cut(s) 1406
PaqCI CACCTGC 2 cut(s) 710, 793
PciSI GCTCTTC 3 cut(s) 293, 311, 833
PctI GAATGC 2 cut(s) 273, 496
PdiI GCCGGC 1 cut(s) 27
PfeI GAWTC 1 cut(s) 1309
PinAI ACCGGT 1 cut(s) 920
PkrI GCNGC 3 cut(s) 790, 901, 1011
PleI GAGTC 1 cut(s) 1408
PpsI GAGTC 1 cut(s) 1408
PpuMI RGGWCCY 2 cut(s) 997, 1319
PshBI ATTAAT 1 cut(s) 666
Psp5II RGGWCCY 2 cut(s) 997, 1319
Psp6I CCWGG 7 cut(s) 61, 67, 113, 271, 339, 1321, 1384
PspFI CCCAGC 2 cut(s) 833, 1065
PspGI CCWGG 7 cut(s) 61, 67, 113, 271, 339, 1321, 1384
PspN4I GGNNCC 5 cut(s) 506, 705, 724, 998, 1383
PspPI GGNCC 7 cut(s) 65, 183, 704, 872, 976, 997, 1319
PspPPI RGGWCCY 2 cut(s) 997, 1319
PspXI VCTCGAGB 1 cut(s) 168
PstI CTGCAG 1 cut(s) 1014
PsuI RGATCY 1 cut(s) 584
RseI CAYNNNNRTG 2 cut(s) 921, 1041
SapI GCTCTTC 3 cut(s) 293, 311, 833
SaqAI TTAA 3 cut(s) 666, 938, 1002
SatI GCNGC 3 cut(s) 789, 900, 1010
Sau3AI GATC 2 cut(s) 584, 1080
Sau96I GGNCC 7 cut(s) 65, 183, 704, 872, 976, 997, 1319
SchI GAGTC 1 cut(s) 1409
ScrFI CCNGG 7 cut(s) 63, 69, 115, 273, 341, 1323, 1386
SduI GDGCHC 2 cut(s) 727, 784
SfaNI GCATC 5 cut(s) 384, 402, 403, 473, 1183
SfcI CTRYAG 2 cut(s) 124, 1010
Sfr274I CTCGAG 1 cut(s) 168
SgrAI CRCCGGYG 1 cut(s) 920
SinI GGWCC 7 cut(s) 65, 183, 704, 872, 976, 997, 1319
SlaI CTCGAG 1 cut(s) 168
SmiMI CAYNNNNRTG 2 cut(s) 921, 1041
SmlI CTYRAG 2 cut(s) 168, 1155
SmoI CTYRAG 2 cut(s) 168, 1155
SphI GCATGC 2 cut(s) 325, 803
Sse9I AATT 4 cut(s) 445, 663, 1073, 1234
SsiI CCGC 1 cut(s) 14
SspMI CTAG 3 cut(s) 327, 431, 588
StyD4I CCNGG 7 cut(s) 61, 67, 113, 271, 339, 1321, 1384
StyI CCWWGG 3 cut(s) 186, 707, 804
TaaI ACNGT 4 cut(s) 125, 250, 559, 622
TaiI ACGT 2 cut(s) 141, 1055
TaqI TCGA 2 cut(s) 58, 169
TasI AATT 4 cut(s) 445, 663, 1073, 1234
TfiI GAWTC 1 cut(s) 1309
Tru1I TTAA 3 cut(s) 666, 938, 1002
Tru9I TTAA 3 cut(s) 666, 938, 1002
TscAI CASTG 2 cut(s) 568, 1345
TseFI GTSAC 2 cut(s) 559, 1048
TseI GCWGC 3 cut(s) 788, 899, 1009
Tsp45I GTSAC 2 cut(s) 559, 1048
TspDTI ATGAA 3 cut(s) 485, 834, 1395
TspGWI ACGGA 1 cut(s) 497
TspRI CASTG 2 cut(s) 568, 1345
VneI GTGCAC 1 cut(s) 780
VpaK11BI GGWCC 7 cut(s) 65, 183, 704, 872, 976, 997, 1319
VspI ATTAAT 1 cut(s) 666
XagI CCTNNNNNAGG 2 cut(s) 434, 909
XceI RCATGY 2 cut(s) 325, 803
XhoI CTCGAG 1 cut(s) 168
XspI CTAG 3 cut(s) 327, 431, 588
ZraI GACGTC 1 cut(s) 1053
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.